data_6TE5 # _model_server_result.job_id zg5vpXyrxkyvJK968quIYg _model_server_result.datetime_utc '2025-02-05 17:56:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6te5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":701}' # _entry.id 6TE5 # _exptl.entry_id 6TE5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TE5 _cell.length_a 81.184 _cell.length_b 89.338 _cell.length_c 159.208 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TE5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 204 A LYS 204 1_555 C O2B NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 C N7N NAD . A NAD 601 3_555 B CG ASP 363 B ASP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.406 ? covale ? covale3 C C7N NAD . A NAD 601 3_555 B OD1 ASP 363 B ASP 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 300 n n PA O2A NAD sing 301 n n PA O5B NAD sing 302 n n PA O3 NAD sing 303 n n O2A HOA2 NAD sing 304 n n O5B C5B NAD sing 305 n n C5B C4B NAD sing 306 n n C5B H51A NAD sing 307 n n C5B H52A NAD sing 308 n n C4B O4B NAD sing 309 n n C4B C3B NAD sing 310 n n C4B H4B NAD sing 311 n n O4B C1B NAD sing 312 n n C3B O3B NAD sing 313 n n C3B C2B NAD sing 314 n n C3B H3B NAD sing 315 n n O3B HO3A NAD sing 316 n n C2B O2B NAD sing 317 n n C2B C1B NAD sing 318 n n C2B H2B NAD sing 319 n n O2B HO2A NAD sing 320 n n C1B N9A NAD sing 321 n n C1B H1B NAD sing 322 n n N9A C8A NAD sing 323 n y N9A C4A NAD sing 324 n y C8A N7A NAD doub 325 n y C8A H8A NAD sing 326 n n N7A C5A NAD sing 327 n y C5A C6A NAD sing 328 n y C5A C4A NAD doub 329 n y C6A N6A NAD sing 330 n n C6A N1A NAD doub 331 n y N6A H61A NAD sing 332 n n N6A H62A NAD sing 333 n n N1A C2A NAD sing 334 n y C2A N3A NAD doub 335 n y C2A H2A NAD sing 336 n n N3A C4A NAD sing 337 n y O3 PN NAD sing 338 n n PN O1N NAD doub 339 n n PN O2N NAD sing 340 n n PN O5D NAD sing 341 n n O5D C5D NAD sing 342 n n C5D C4D NAD sing 343 n n C5D H51N NAD sing 344 n n C5D H52N NAD sing 345 n n C4D O4D NAD sing 346 n n C4D C3D NAD sing 347 n n C4D H4D NAD sing 348 n n O4D C1D NAD sing 349 n n C3D O3D NAD sing 350 n n C3D C2D NAD sing 351 n n C3D H3D NAD sing 352 n n O3D HO3N NAD sing 353 n n C2D O2D NAD sing 354 n n C2D C1D NAD sing 355 n n C2D H2D NAD sing 356 n n O2D HO2N NAD sing 357 n n C1D N1N NAD sing 358 n n C1D H1D NAD sing 359 n n N1N C2N NAD sing 360 n y N1N C6N NAD doub 361 n y C2N C3N NAD doub 362 n y C2N H2N NAD sing 363 n n C3N C7N NAD sing 364 n n C3N C4N NAD sing 365 n y C7N O7N NAD doub 366 n n C7N N7N NAD sing 367 n n N7N H71N NAD sing 368 n n N7N H72N NAD sing 369 n n C4N C5N NAD doub 370 n y C4N H4N NAD sing 371 n n C5N C6N NAD sing 372 n y C5N H5N NAD sing 373 n n C6N H6N NAD sing 374 n n # _atom_sites.entry_id 6TE5 _atom_sites.fract_transf_matrix[1][1] 0.012318 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006281 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 601 601 NAD NAD . D 3 N4Q A 1 602 801 N4Q LQ4 . E 4 GOL A 1 603 601 GOL GOL . F 2 NAD B 1 701 701 NAD NAD . G 3 N4Q B 1 702 801 N4Q LQ4 . H 5 HOH A 1 701 26 HOH HOH . H 5 HOH A 2 702 4 HOH HOH . H 5 HOH A 3 703 1 HOH HOH . H 5 HOH A 4 704 5 HOH HOH . H 5 HOH A 5 705 14 HOH HOH . H 5 HOH A 6 706 7 HOH HOH . H 5 HOH A 7 707 13 HOH HOH . I 5 HOH B 1 801 22 HOH HOH . I 5 HOH B 2 802 24 HOH HOH . I 5 HOH B 3 803 17 HOH HOH . I 5 HOH B 4 804 16 HOH HOH . I 5 HOH B 5 805 9 HOH HOH . I 5 HOH B 6 806 6 HOH HOH . I 5 HOH B 7 807 3 HOH HOH . I 5 HOH B 8 808 15 HOH HOH . I 5 HOH B 9 809 10 HOH HOH . I 5 HOH B 10 810 2 HOH HOH . I 5 HOH B 11 811 12 HOH HOH . I 5 HOH B 12 812 25 HOH HOH . I 5 HOH B 13 813 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . F 2 51.341 -3.348 32.768 1 55.16 ? PA NAD 701 B 1 HETATM 2 O O1A NAD . . . F 2 49.892 -3.073 32.701 1 43.18 ? O1A NAD 701 B 1 HETATM 3 O O2A NAD . . . F 2 51.996 -3.371 34.084 1 69.53 ? O2A NAD 701 B 1 HETATM 4 O O5B NAD . . . F 2 52.107 -2.343 31.854 1 50.71 ? O5B NAD 701 B 1 HETATM 5 C C5B NAD . . . F 2 52.004 -1.05 32.411 1 47.32 ? C5B NAD 701 B 1 HETATM 6 C C4B NAD . . . F 2 52.829 -0.09 31.613 1 47.44 ? C4B NAD 701 B 1 HETATM 7 O O4B NAD . . . F 2 52.293 1.221 31.847 1 46.25 ? O4B NAD 701 B 1 HETATM 8 C C3B NAD . . . F 2 54.267 0.09 32.069 1 51.13 ? C3B NAD 701 B 1 HETATM 9 O O3B NAD . . . F 2 54.832 1.022 31.179 1 53.92 ? O3B NAD 701 B 1 HETATM 10 C C2B NAD . . . F 2 54.106 0.941 33.321 1 46.16 ? C2B NAD 701 B 1 HETATM 11 O O2B NAD . . . F 2 55.206 1.765 33.649 1 48.46 ? O2B NAD 701 B 1 HETATM 12 C C1B NAD . . . F 2 52.853 1.749 33.018 1 46.5 ? C1B NAD 701 B 1 HETATM 13 N N9A NAD . . . F 2 51.876 1.672 34.087 1 46.98 ? N9A NAD 701 B 1 HETATM 14 C C8A NAD . . . F 2 51.815 0.691 35.031 1 52.28 ? C8A NAD 701 B 1 HETATM 15 N N7A NAD . . . F 2 50.862 0.866 35.901 1 54.39 ? N7A NAD 701 B 1 HETATM 16 C C5A NAD . . . F 2 50.273 2.053 35.52 1 45.49 ? C5A NAD 701 B 1 HETATM 17 C C6A NAD . . . F 2 49.21 2.786 36.059 1 44.07 ? C6A NAD 701 B 1 HETATM 18 N N6A NAD . . . F 2 48.544 2.427 37.147 1 41.54 ? N6A NAD 701 B 1 HETATM 19 N N1A NAD . . . F 2 48.88 3.94 35.446 1 43.36 ? N1A NAD 701 B 1 HETATM 20 C C2A NAD . . . F 2 49.566 4.306 34.364 1 38.83 ? C2A NAD 701 B 1 HETATM 21 N N3A NAD . . . F 2 50.576 3.692 33.77 1 43.1 ? N3A NAD 701 B 1 HETATM 22 C C4A NAD . . . F 2 50.889 2.562 34.405 1 45.17 ? C4A NAD 701 B 1 HETATM 23 O O3 NAD . . . F 2 51.703 -4.69 32.049 1 56.24 ? O3 NAD 701 B 1 HETATM 24 P PN NAD . . . F 2 53.175 -5.202 31.835 1 74.82 ? PN NAD 701 B 1 HETATM 25 O O1N NAD . . . F 2 54.017 -4.009 31.616 1 57 ? O1N NAD 701 B 1 HETATM 26 O O2N NAD . . . F 2 53.128 -6.26 30.802 1 70.46 ? O2N NAD 701 B 1 HETATM 27 O O5D NAD . . . F 2 53.568 -5.856 33.227 1 79.37 ? O5D NAD 701 B 1 HETATM 28 C C5D NAD . . . F 2 53.149 -7.191 33.569 1 87.57 ? C5D NAD 701 B 1 HETATM 29 C C4D NAD . . . F 2 51.819 -7.106 34.266 1 97.04 ? C4D NAD 701 B 1 HETATM 30 O O4D NAD . . . F 2 51.36 -8.403 34.673 1 106.02 ? O4D NAD 701 B 1 HETATM 31 C C3D NAD . . . F 2 51.796 -6.321 35.575 1 95.86 ? C3D NAD 701 B 1 HETATM 32 O O3D NAD . . . F 2 51.685 -4.921 35.381 1 86.64 ? O3D NAD 701 B 1 HETATM 33 C C2D NAD . . . F 2 50.6 -6.948 36.296 1 106.08 ? C2D NAD 701 B 1 HETATM 34 O O2D NAD . . . F 2 49.487 -6.079 36.298 1 89.79 ? O2D NAD 701 B 1 HETATM 35 C C1D NAD . . . F 2 50.214 -8.164 35.462 1 114.48 ? C1D NAD 701 B 1 HETATM 36 N N1N NAD . . . F 2 49.906 -9.369 36.288 1 117.69 ? N1N NAD 701 B 1 HETATM 37 C C2N NAD . . . F 2 49.507 -9.246 37.601 1 112.33 ? C2N NAD 701 B 1 HETATM 38 C C3N NAD . . . F 2 48.92 -10.333 38.247 1 118.69 ? C3N NAD 701 B 1 HETATM 39 C C7N NAD . . . F 2 48.406 -10.211 39.662 1 110.7 ? C7N NAD 701 B 1 HETATM 40 O O7N NAD . . . F 2 47.317 -10.697 39.95 1 105.47 ? O7N NAD 701 B 1 HETATM 41 N N7N NAD . . . F 2 49.183 -9.624 40.558 1 84.64 ? N7N NAD 701 B 1 HETATM 42 C C4N NAD . . . F 2 48.837 -11.541 37.577 1 117.5 ? C4N NAD 701 B 1 HETATM 43 C C5N NAD . . . F 2 49.456 -11.69 36.361 1 115.04 ? C5N NAD 701 B 1 HETATM 44 C C6N NAD . . . F 2 49.994 -10.592 35.739 1 116.01 ? C6N NAD 701 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 44 #