data_6TEJ # _model_server_result.job_id ieuNqT-SRpGvC_6VRO9Wlw _model_server_result.datetime_utc '2024-11-23 10:01:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tej # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 6TEJ # _exptl.entry_id 6TEJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.2 _cell.angle_gamma 90 _cell.entry_id 6TEJ _cell.length_a 103.06 _cell.length_b 78.58 _cell.length_c 133.57 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TEJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 C SG CYS 25 C CYS 22 1_555 C SG CYS 99 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A NE2 HIS 393 A HIS 393 1_555 D NI NI . A NI 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 A NE2 HIS 439 A HIS 439 1_555 D NI NI . A NI 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc3 A NE2 HIS 444 A HIS 444 1_555 D NI NI . A NI 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc4 D NI NI . A NI 1001 1_555 F O HOH . A HOH 1125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TEJ _atom_sites.fract_transf_matrix[1][1] 0.009703 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001399 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012726 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007564 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NI A 1 1001 1 NI NI . E 5 DMU B 1 601 601 DMU DMU . F 6 HOH A 1 1101 17 HOH HOH . F 6 HOH A 2 1102 8 HOH HOH . F 6 HOH A 3 1103 7 HOH HOH . F 6 HOH A 4 1104 14 HOH HOH . F 6 HOH A 5 1105 11 HOH HOH . F 6 HOH A 6 1106 28 HOH HOH . F 6 HOH A 7 1107 1 HOH HOH . F 6 HOH A 8 1108 42 HOH HOH . F 6 HOH A 9 1109 2 HOH HOH . F 6 HOH A 10 1110 19 HOH HOH . F 6 HOH A 11 1111 23 HOH HOH . F 6 HOH A 12 1112 36 HOH HOH . F 6 HOH A 13 1113 45 HOH HOH . F 6 HOH A 14 1114 13 HOH HOH . F 6 HOH A 15 1115 21 HOH HOH . F 6 HOH A 16 1116 25 HOH HOH . F 6 HOH A 17 1117 59 HOH HOH . F 6 HOH A 18 1118 32 HOH HOH . F 6 HOH A 19 1119 37 HOH HOH . F 6 HOH A 20 1120 56 HOH HOH . F 6 HOH A 21 1121 26 HOH HOH . F 6 HOH A 22 1122 4 HOH HOH . F 6 HOH A 23 1123 24 HOH HOH . F 6 HOH A 24 1124 33 HOH HOH . F 6 HOH A 25 1125 64 HOH HOH . F 6 HOH A 26 1126 39 HOH HOH . F 6 HOH A 27 1127 44 HOH HOH . G 6 HOH B 1 701 47 HOH HOH . G 6 HOH B 2 702 16 HOH HOH . G 6 HOH B 3 703 29 HOH HOH . G 6 HOH B 4 704 6 HOH HOH . G 6 HOH B 5 705 22 HOH HOH . G 6 HOH B 6 706 5 HOH HOH . G 6 HOH B 7 707 30 HOH HOH . G 6 HOH B 8 708 63 HOH HOH . G 6 HOH B 9 709 10 HOH HOH . G 6 HOH B 10 710 18 HOH HOH . G 6 HOH B 11 711 55 HOH HOH . G 6 HOH B 12 712 52 HOH HOH . G 6 HOH B 13 713 15 HOH HOH . G 6 HOH B 14 714 34 HOH HOH . G 6 HOH B 15 715 31 HOH HOH . G 6 HOH B 16 716 61 HOH HOH . G 6 HOH B 17 717 43 HOH HOH . G 6 HOH B 18 718 12 HOH HOH . G 6 HOH B 19 719 58 HOH HOH . G 6 HOH B 20 720 60 HOH HOH . G 6 HOH B 21 721 57 HOH HOH . G 6 HOH B 22 722 50 HOH HOH . H 6 HOH C 1 201 41 HOH HOH . H 6 HOH C 2 202 35 HOH HOH . H 6 HOH C 3 203 46 HOH HOH . H 6 HOH C 4 204 9 HOH HOH . H 6 HOH C 5 205 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -63.577 _atom_site.Cartn_y 0.168 _atom_site.Cartn_z -27.913 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.26 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #