data_6TEZ # _model_server_result.job_id BvWp8iL9-g9Dh9tJtOmeUA _model_server_result.datetime_utc '2024-10-19 15:49:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tez # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":804}' # _entry.id 6TEZ # _exptl.entry_id 6TEZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 146.098 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-OXOGLUTARIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TEZ _cell.length_a 98.001 _cell.length_b 99.77 _cell.length_c 224.461 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TEZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_557 x,-y,-z+2 1 0 0 0 -1 0 0 0 -1 0 0 448.922 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG L 1548 NAG 2 n B NAG 2 B 2 NAG L 1549 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 256 A CYS 279 1_555 A SG CYS 259 A CYS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 356 A CYS 379 1_555 A SG CYS 362 A CYS 385 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf3 A SG CYS 540 A CYS 563 1_555 A SG CYS 675 A CYS 698 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 40 A ASN 63 1_555 J C1 NAG . A NAG 808 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 525 A ASN 548 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? metalc ? metalc1 A OD2 ASP 89 A ASP 112 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc2 A OD1 ASP 92 A ASP 115 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc3 A OD2 ASP 92 A ASP 115 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.895 ? metalc ? metalc4 A NE2 HIS 230 A HIS 253 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc5 A NE2 HIS 572 A HIS 595 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc6 A OD1 ASP 574 A ASP 597 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc7 A OD2 ASP 574 A ASP 597 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc8 A OD1 ASP 588 A ASP 611 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc9 A OD2 ASP 588 A ASP 611 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc10 A NE2 HIS 590 A HIS 613 1_555 H FE FE2 . A FE2 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 A NE2 HIS 644 A HIS 667 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc12 A OD1 ASP 646 A ASP 669 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc13 A OD2 ASP 646 A ASP 669 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc14 A NE2 HIS 696 A HIS 719 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc15 C O2B UGA . A UGA 801 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc16 C O2A UGA . A UGA 801 1_555 I MN MN . A MN 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc17 F O2 AKG . A AKG 804 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc18 F O5 AKG . A AKG 804 1_555 G FE FE2 . A FE2 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? # _chem_comp.formula 'C5 H6 O5' _chem_comp.formula_weight 146.098 _chem_comp.id AKG _chem_comp.mon_nstd_flag . _chem_comp.name '2-OXOGLUTARIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 AKG doub 1 n n C1 O2 AKG sing 2 n n C1 C2 AKG sing 3 n n O2 HO2 AKG sing 4 n n C2 O5 AKG doub 5 n n C2 C3 AKG sing 6 n n C3 C4 AKG sing 7 n n C3 H31 AKG sing 8 n n C3 H32 AKG sing 9 n n C4 C5 AKG sing 10 n n C4 H41 AKG sing 11 n n C4 H42 AKG sing 12 n n C5 O3 AKG doub 13 n n C5 O4 AKG sing 14 n n O4 HO4 AKG sing 15 n n # _atom_sites.entry_id 6TEZ _atom_sites.fract_transf_matrix[1][1] 0.010204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010023 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 UGA A 1 801 801 UGA UGA . D 4 GOL A 1 802 1 GOL GOL . E 4 GOL A 1 803 2 GOL GOL . F 5 AKG A 1 804 1001 AKG AKG . G 6 FE2 A 1 805 1004 FE2 FE2 . H 6 FE2 A 1 806 1005 FE2 FE2 . I 7 MN A 1 807 1006 MN MN . J 8 NAG A 1 808 1063 NAG NAG . K 9 HOH A 1 901 15 HOH HOH . K 9 HOH A 2 902 63 HOH HOH . K 9 HOH A 3 903 27 HOH HOH . K 9 HOH A 4 904 51 HOH HOH . K 9 HOH A 5 905 57 HOH HOH . K 9 HOH A 6 906 34 HOH HOH . K 9 HOH A 7 907 22 HOH HOH . K 9 HOH A 8 908 48 HOH HOH . K 9 HOH A 9 909 58 HOH HOH . K 9 HOH A 10 910 53 HOH HOH . K 9 HOH A 11 911 24 HOH HOH . K 9 HOH A 12 912 1 HOH HOH . K 9 HOH A 13 913 11 HOH HOH . K 9 HOH A 14 914 36 HOH HOH . K 9 HOH A 15 915 18 HOH HOH . K 9 HOH A 16 916 3 HOH HOH . K 9 HOH A 17 917 13 HOH HOH . K 9 HOH A 18 918 21 HOH HOH . K 9 HOH A 19 919 61 HOH HOH . K 9 HOH A 20 920 70 HOH HOH . K 9 HOH A 21 921 40 HOH HOH . K 9 HOH A 22 922 9 HOH HOH . K 9 HOH A 23 923 30 HOH HOH . K 9 HOH A 24 924 62 HOH HOH . K 9 HOH A 25 925 43 HOH HOH . K 9 HOH A 26 926 35 HOH HOH . K 9 HOH A 27 927 17 HOH HOH . K 9 HOH A 28 928 5 HOH HOH . K 9 HOH A 29 929 16 HOH HOH . K 9 HOH A 30 930 54 HOH HOH . K 9 HOH A 31 931 56 HOH HOH . K 9 HOH A 32 932 42 HOH HOH . K 9 HOH A 33 933 41 HOH HOH . K 9 HOH A 34 934 6 HOH HOH . K 9 HOH A 35 935 71 HOH HOH . K 9 HOH A 36 936 39 HOH HOH . K 9 HOH A 37 937 29 HOH HOH . K 9 HOH A 38 938 25 HOH HOH . K 9 HOH A 39 939 31 HOH HOH . K 9 HOH A 40 940 47 HOH HOH . K 9 HOH A 41 941 10 HOH HOH . K 9 HOH A 42 942 60 HOH HOH . K 9 HOH A 43 943 65 HOH HOH . K 9 HOH A 44 944 12 HOH HOH . K 9 HOH A 45 945 46 HOH HOH . K 9 HOH A 46 946 4 HOH HOH . K 9 HOH A 47 947 73 HOH HOH . K 9 HOH A 48 948 44 HOH HOH . K 9 HOH A 49 949 52 HOH HOH . K 9 HOH A 50 950 68 HOH HOH . K 9 HOH A 51 951 14 HOH HOH . K 9 HOH A 52 952 8 HOH HOH . K 9 HOH A 53 953 2 HOH HOH . K 9 HOH A 54 954 32 HOH HOH . K 9 HOH A 55 955 19 HOH HOH . K 9 HOH A 56 956 7 HOH HOH . K 9 HOH A 57 957 72 HOH HOH . K 9 HOH A 58 958 33 HOH HOH . K 9 HOH A 59 959 20 HOH HOH . K 9 HOH A 60 960 55 HOH HOH . K 9 HOH A 61 961 49 HOH HOH . K 9 HOH A 62 962 67 HOH HOH . K 9 HOH A 63 963 59 HOH HOH . K 9 HOH A 64 964 38 HOH HOH . K 9 HOH A 65 965 45 HOH HOH . K 9 HOH A 66 966 64 HOH HOH . K 9 HOH A 67 967 69 HOH HOH . K 9 HOH A 68 968 28 HOH HOH . K 9 HOH A 69 969 66 HOH HOH . K 9 HOH A 70 970 50 HOH HOH . K 9 HOH A 71 971 26 HOH HOH . K 9 HOH A 72 972 23 HOH HOH . K 9 HOH A 73 973 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AKG . . . F 5 78.338 15.012 227.906 1 56.38 ? C1 AKG 804 A 1 HETATM 2 O O1 AKG . . . F 5 77.793 15.926 227.244 1 55.29 ? O1 AKG 804 A 1 HETATM 3 O O2 AKG . . . F 5 77.601 14.156 228.46 1 53.51 ? O2 AKG 804 A 1 HETATM 4 C C2 AKG . . . F 5 79.866 15.009 228.025 1 61.59 ? C2 AKG 804 A 1 HETATM 5 O O5 AKG . . . F 5 80.483 14.065 228.382 1 63.13 ? O5 AKG 804 A 1 HETATM 6 C C3 AKG . . . F 5 80.625 16.284 227.687 1 62.94 ? C3 AKG 804 A 1 HETATM 7 C C4 AKG . . . F 5 81.581 16.584 228.835 1 61.09 ? C4 AKG 804 A 1 HETATM 8 C C5 AKG . . . F 5 82.725 17.444 228.316 1 60.63 ? C5 AKG 804 A 1 HETATM 9 O O3 AKG . . . F 5 83.625 16.925 227.602 1 60.18 ? O3 AKG 804 A 1 HETATM 10 O O4 AKG . . . F 5 82.756 18.668 228.607 1 60.55 ? O4 AKG 804 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 10 #