data_6THB
#
_model_server_result.job_id            K4LJ_lS4DjzU1DpLaDSnOA 
_model_server_result.datetime_utc      '2024-11-29 15:59:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6thb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":703}' 
#
_entry.id    6THB 
#
_exptl.entry_id    6THB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6THB 
_cell.length_a            201.46 
_cell.length_b            201.46 
_cell.length_c            112.89 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6THB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,P 1 1 
B,J,K,L,M,N,O,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 212 1_555 A SG CYS 417 A CYS 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 34 A CYS 239 1_555 A SG CYS 58 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 100 A CYS 305 1_555 A SG CYS 113 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 105 A CYS 310 1_555 A SG CYS 171 A CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 194 A CYS 399 1_555 A SG CYS 211 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
disulf ? disulf6 A SG CYS 199 A CYS 404 1_555 A SG CYS 315 A CYS 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf7 A SG CYS 309 A CYS 514 1_555 A SG CYS 319 A CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf8 A SG CYS 381 A CYS 586 1_555 A SG CYS 390 A CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf9 B SG CYS 7 B CYS 212 1_555 B SG CYS 417 B CYS 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf10 B SG CYS 34 B CYS 239 1_555 B SG CYS 58 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf11 B SG CYS 100 B CYS 305 1_555 B SG CYS 113 B CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 B SG CYS 105 B CYS 310 1_555 B SG CYS 171 B CYS 376 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf13 B SG CYS 194 B CYS 399 1_555 B SG CYS 211 B CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf14 B SG CYS 199 B CYS 404 1_555 B SG CYS 315 B CYS 520 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf15 B SG CYS 309 B CYS 514 1_555 B SG CYS 319 B CYS 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf16 B SG CYS 381 B CYS 586 1_555 B SG CYS 390 B CYS 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
covale ? covale1 A ND2 ASN 106 A ASN 311 1_555 D C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? 
covale ? covale2 A ND2 ASN 117 A ASN 322 1_555 C C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? 
covale ? covale3 A ND2 ASN 198 A ASN 403 1_555 E C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 220 A ASN 425 1_555 F C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 A ND2 ASN 236 A ASN 441 1_555 I C1 NAG . A NAG 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale6 A ND2 ASN 297 A ASN 502 1_555 G C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale7 A ND2 ASN 357 A ASN 562 1_555 H C1 NAG . A NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale8 B ND2 ASN 106 B ASN 311 1_555 J C1 NAG . B NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale9 B ND2 ASN 117 B ASN 322 1_555 K C1 NAG . B NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale10 B ND2 ASN 220 B ASN 425 1_555 L C1 NAG . B NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 B ND2 ASN 236 B ASN 441 1_555 O C1 NAG . B NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale12 B ND2 ASN 297 B ASN 502 1_555 M C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale13 B ND2 ASN 357 B ASN 562 1_555 N C1 NAG . B NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 237 n n 
C1 O1 NAG sing 238 n n 
C1 O5 NAG sing 239 n n 
C1 H1 NAG sing 240 n n 
C2 C3 NAG sing 241 n n 
C2 N2 NAG sing 242 n n 
C2 H2 NAG sing 243 n n 
C3 C4 NAG sing 244 n n 
C3 O3 NAG sing 245 n n 
C3 H3 NAG sing 246 n n 
C4 C5 NAG sing 247 n n 
C4 O4 NAG sing 248 n n 
C4 H4 NAG sing 249 n n 
C5 C6 NAG sing 250 n n 
C5 O5 NAG sing 251 n n 
C5 H5 NAG sing 252 n n 
C6 O6 NAG sing 253 n n 
C6 H61 NAG sing 254 n n 
C6 H62 NAG sing 255 n n 
C7 C8 NAG sing 256 n n 
C7 N2 NAG sing 257 n n 
C7 O7 NAG doub 258 n n 
C8 H81 NAG sing 259 n n 
C8 H82 NAG sing 260 n n 
C8 H83 NAG sing 261 n n 
N2 HN2 NAG sing 262 n n 
O1 HO1 NAG sing 263 n n 
O3 HO3 NAG sing 264 n n 
O4 HO4 NAG sing 265 n n 
O6 HO6 NAG sing 266 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     6THB 
_atom_sites.fract_transf_matrix[1][1]    0.004964 
_atom_sites.fract_transf_matrix[1][2]    0.002866 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005732 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008858 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 701 1617 NAG NAG . 
D 2 NAG A 1 702 1618 NAG NAG . 
E 2 NAG A 1 703 1619 NAG NAG . 
F 2 NAG A 1 704 1620 NAG NAG . 
G 2 NAG A 1 705 1621 NAG NAG . 
H 2 NAG A 1 706 1622 NAG NAG . 
I 2 NAG A 1 707 1623 NAG NAG . 
J 2 NAG B 1 701 1621 NAG NAG . 
K 2 NAG B 1 702 1622 NAG NAG . 
L 2 NAG B 1 703 1623 NAG NAG . 
M 2 NAG B 1 704 1624 NAG NAG . 
N 2 NAG B 1 705 1625 NAG NAG . 
O 2 NAG B 1 706 1626 NAG NAG . 
P 3 HOH A 1 801 12 HOH HOH . 
P 3 HOH A 2 802 7 HOH HOH . 
P 3 HOH A 3 803 14 HOH HOH . 
P 3 HOH A 4 804 6 HOH HOH . 
Q 3 HOH B 1 801 15 HOH HOH . 
Q 3 HOH B 2 802 18 HOH HOH . 
Q 3 HOH B 3 803 1 HOH HOH . 
Q 3 HOH B 4 804 17 HOH HOH . 
Q 3 HOH B 5 805 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 2 81.641 -70.894 -36.027 1 56.02 ? C1 NAG 703 A 1 
HETATM 2 C C2 NAG . . . E 2 81.248 -69.413 -36.063 1 53.89 ? C2 NAG 703 A 1 
HETATM 3 C C3 NAG . . . E 2 79.726 -69.276 -36.089 1 53.44 ? C3 NAG 703 A 1 
HETATM 4 C C4 NAG . . . E 2 79.133 -70.101 -37.224 1 58.45 ? C4 NAG 703 A 1 
HETATM 5 C C5 NAG . . . E 2 79.608 -71.548 -37.129 1 61.58 ? C5 NAG 703 A 1 
HETATM 6 C C6 NAG . . . E 2 79.135 -72.404 -38.281 1 72.4 ? C6 NAG 703 A 1 
HETATM 7 C C7 NAG . . . E 2 82.115 -67.407 -34.924 1 66.22 ? C7 NAG 703 A 1 
HETATM 8 C C8 NAG . . . E 2 82.683 -66.863 -33.646 1 58.17 ? C8 NAG 703 A 1 
HETATM 9 N N2 NAG . . . E 2 81.806 -68.709 -34.918 1 64.44 ? N2 NAG 703 A 1 
HETATM 10 O O3 NAG . . . E 2 79.366 -67.908 -36.243 1 61.59 ? O3 NAG 703 A 1 
HETATM 11 O O4 NAG . . . E 2 77.711 -70.066 -37.174 1 71.82 ? O4 NAG 703 A 1 
HETATM 12 O O5 NAG . . . E 2 81.042 -71.583 -37.145 1 56.73 ? O5 NAG 703 A 1 
HETATM 13 O O6 NAG . . . E 2 79.411 -73.78 -38.06 1 73.79 ? O6 NAG 703 A 1 
HETATM 14 O O7 NAG . . . E 2 81.945 -66.7 -35.913 1 67.6 ? O7 NAG 703 A 1 
#
_model_server_stats.io_time_ms              83 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           354 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#