data_6THD # _model_server_result.job_id eeSx9YxjXYdnx49fFHCdAQ _model_server_result.datetime_utc '2025-03-04 14:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6thd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 6THD # _exptl.entry_id 6THD _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 96.063 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6THD _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6THD _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 240-meric 240 'complete icosahedral assembly' 1 ? tetrameric 4 'icosahedral asymmetric unit' 2 ? eicosameric 20 'icosahedral pentamer' 3 ? 24-meric 24 'icosahedral 23 hexamer' 4 ? tetrameric 4 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 (1-60) A,B,C,D,E,F,G,H,I,J,K 2 1 A,B,C,D,E,F,G,H,I,J,K 3 (1-5) A,B,C,D,E,F,G,H,I,J,K 4 (1,2,6,10,23,24) A,B,C,D,E,F,G,H,I,J,K 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? -0.809023 -0.309018 0.49999 0.499997 -0.809017 0.309022 0.309007 0.499999 0.809021 0.53121 0.32361 0.86859 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.499993 -0.809023 0.309013 0.809023 0.309017 -0.499991 0.309014 0.49999 0.809024 0.32316 -0.53955 -0.19972 3 'point symmetry operation' ? ? -0.309036 -0.500004 0.809007 0.500003 -0.809017 -0.309012 0.809008 0.30901 0.500019 0.85952 -0.34498 -0.5312 4 'point symmetry operation' ? ? -0.309036 0.500003 0.809008 -0.500004 -0.809017 0.30901 0.809007 -0.309012 0.500019 0.86786 0.31482 -0.53635 5 'point symmetry operation' ? ? 0.499993 0.809023 0.309014 -0.809023 0.309017 0.49999 0.309013 -0.499991 0.809024 0.33664 0.52803 -0.20805 6 'point symmetry operation' ? ? -0.809029 0.309007 0.499987 0.309007 -0.500001 0.80902 0.499987 0.80902 0.30903 0.53591 0.85192 -0.7312 7 'point symmetry operation' ? ? -0.000012 1 0 -0.000013 0 1 1 0.000012 0.000013 0.00789 1.05997 -1.06785 8 'point symmetry operation' ? ? 0.809017 0.309027 -0.499994 0.309007 0.5 0.80902 0.500007 -0.809013 0.309017 -0.53166 0.86025 -0.74471 9 'point symmetry operation' ? ? 0.500007 -0.809011 -0.309022 0.809012 0.309017 0.500009 -0.30902 -0.50001 0.80901 -0.3371 0.52876 -0.20834 10 'point symmetry operation' ? ? -0.5 -0.809023 0.309001 0.809011 -0.309018 0.500009 -0.309032 0.499989 0.809018 0.3227 0.52361 -0.2 11 'point symmetry operation' ? ? -0.500006 -0.809012 0.30902 -0.809012 0.309017 -0.500008 0.30902 -0.500008 -0.809011 0.32272 -0.54028 -1.93661 12 'point symmetry operation' ? ? -0.809017 0.309025 0.499995 -0.309008 0.500002 -0.80902 -0.500006 -0.809013 -0.309018 0.53592 -0.86859 -1.4054 13 'point symmetry operation' ? ? 0.000011 1 0.000002 0.000013 0.000002 -1 -1 0.000011 -0.000013 0.00789 -1.07665 -1.06877 14 'point symmetry operation' ? ? 0.809029 0.309009 -0.499986 -0.309006 -0.5 -0.809021 -0.499988 0.80902 -0.309029 -0.53165 -0.87693 -1.39193 15 'point symmetry operation' ? ? 0.500001 -0.809022 -0.309002 -0.809011 -0.309018 -0.500009 0.309031 0.499991 -0.809017 -0.33708 -0.54543 -1.92829 16 'point symmetry operation' ? ? 0.309035 0.500005 -0.809007 0.500005 -0.809016 -0.309012 -0.809007 -0.309012 -0.50002 -0.86041 -0.34498 -1.60542 17 'point symmetry operation' ? ? 0.309037 -0.500002 -0.809008 -0.500002 -0.809018 0.30901 -0.809008 0.30901 -0.500018 -0.86875 0.31482 -1.60027 18 'point symmetry operation' ? ? -0.499992 -0.809023 -0.309014 -0.809023 0.309015 0.499991 -0.309014 0.499991 -0.809023 -0.33753 0.52803 -1.92857 19 'point symmetry operation' ? ? -1 -0.000001 0 -0.000001 1 0.000002 0 0.000002 -1 -0.00089 0 -2.13662 20 'point symmetry operation' ? ? -0.499994 0.809023 -0.309012 0.809023 0.309019 -0.49999 -0.309012 -0.49999 -0.809025 -0.32404 -0.53954 -1.9369 21 'point symmetry operation' ? ? -0.5 -0.809011 -0.309033 0.809022 -0.309016 -0.499992 0.309003 -0.50001 0.809016 -0.33755 -0.5447 -0.20806 22 'point symmetry operation' ? ? -1 0 -0.000023 0 -1 -0.000002 -0.000023 -0.000002 1 -0.00091 -0.01667 0 23 'point symmetry operation' ? ? -0.5 0.809011 -0.309032 -0.809023 -0.309018 0.499989 0.309001 0.500009 0.809018 -0.32406 0.52287 -0.19972 24 'point symmetry operation' ? ? 0.309017 0.499997 -0.809019 -0.500005 0.809016 0.309011 0.809014 0.309024 0.500001 -0.86042 0.32831 -0.53122 25 'point symmetry operation' ? ? 0.309017 -0.499996 -0.809019 0.500003 0.809018 -0.309011 0.809015 -0.309022 0.499999 -0.86876 -0.33149 -0.53637 26 'point symmetry operation' ? ? 0.000012 -0.000011 -1 -1 -0.000002 -0.000012 -0.000002 1 -0.000011 -1.06875 -0.00879 -1.05999 27 'point symmetry operation' ? ? -0.309016 -0.500004 -0.809015 -0.499998 0.809016 -0.309022 0.809019 0.309013 -0.5 -0.86903 -0.33195 -1.59953 28 'point symmetry operation' ? ? -0.809017 -0.309008 -0.500006 0.309025 0.500002 -0.809013 0.499995 -0.80902 -0.309018 -0.53754 -0.86831 -1.40496 29 'point symmetry operation' ? ? -0.809006 0.309027 -0.500012 0.309027 -0.499998 -0.809014 -0.500012 -0.809014 0.309004 -0.53239 -0.87664 -0.74516 30 'point symmetry operation' ? ? -0.308998 0.499997 -0.809026 -0.499995 -0.809017 -0.309025 -0.809027 0.309021 0.499981 -0.8607 -0.34543 -0.53196 31 'point symmetry operation' ? ? 0.809005 0.309027 0.500013 -0.309026 -0.5 0.809014 0.500013 -0.809013 -0.309005 0.53666 0.85164 -1.40494 32 'point symmetry operation' ? ? 0.809017 -0.309008 0.500005 -0.309026 0.5 0.809014 -0.499994 -0.809021 0.309017 0.5315 0.85997 -0.74515 33 'point symmetry operation' ? ? 0.309017 -0.500005 0.809014 0.499997 0.809016 0.309024 -0.809019 0.309011 0.500001 0.8598 0.32876 -0.53194 34 'point symmetry operation' ? ? -0.000012 -0.000013 1 1 0 0.000012 0 1 0.000013 1.06787 -0.00788 -1.05996 35 'point symmetry operation' ? ? 0.308997 0.499996 0.809027 0.499996 -0.809017 0.309023 0.809027 0.309023 -0.49998 0.86815 0.31528 -1.59951 36 'point symmetry operation' ? ? -0.309018 0.499995 0.80902 0.500004 0.809018 -0.309009 -0.809014 0.309024 -0.5 0.86787 -0.33149 -1.60025 37 'point symmetry operation' ? ? 0.499999 0.809011 0.309033 0.809024 -0.309016 -0.49999 -0.309001 0.50001 -0.809017 0.33666 -0.5447 -1.92856 38 'point symmetry operation' ? ? 1 0.000001 0.000023 0.000001 -1 0 0.000023 0 -1 0.00003 -0.01667 -2.13662 39 'point symmetry operation' ? ? 0.500001 -0.809011 0.309031 -0.809022 -0.309018 0.499991 -0.309002 -0.500009 -0.809017 0.32318 0.52288 -1.9369 40 'point symmetry operation' ? ? -0.309016 -0.499998 0.809019 -0.500004 0.809016 0.309013 -0.809015 -0.309022 -0.5 0.85953 0.32831 -1.6054 41 'point symmetry operation' ? ? -0.5 0.809022 0.309003 -0.809011 -0.309016 -0.50001 -0.309033 -0.499992 0.809016 0.33619 -0.54544 -0.20833 42 'point symmetry operation' ? ? 0.500007 0.809012 -0.30902 -0.809011 0.309017 -0.50001 -0.309022 0.500009 0.80901 -0.32361 -0.54028 -0.20001 43 'point symmetry operation' ? ? 0.809017 -0.309026 -0.499994 -0.309008 0.5 -0.809021 0.500005 0.809014 0.309017 -0.53681 -0.86859 -0.73122 44 'point symmetry operation' ? ? -0.000011 -1 0 0.000011 0 -1 1 -0.000011 0.000011 -0.00878 -1.07665 -1.06786 45 'point symmetry operation' ? ? -0.809028 -0.309008 0.499987 -0.309008 -0.499999 -0.809021 0.499987 -0.809021 0.309027 0.53076 -0.87693 -0.74469 46 'point symmetry operation' ? ? 0.809005 -0.309026 0.500013 0.309027 -0.5 -0.809013 0.500013 0.809014 -0.309005 0.53151 -0.87664 -1.39146 47 'point symmetry operation' ? ? 0.308999 -0.499996 0.809026 -0.499996 -0.809017 -0.309023 0.809026 -0.309023 -0.499982 0.85982 -0.34543 -1.60466 48 'point symmetry operation' ? ? -0.000011 0.000011 1 -1 0 -0.000011 0 -1 0.000011 1.06787 -0.00879 -1.07663 49 'point symmetry operation' ? ? 0.309017 0.500003 0.809015 -0.499996 0.809018 -0.309022 -0.809019 -0.309011 0.499999 0.86814 -0.33195 -0.53709 50 'point symmetry operation' ? ? 0.809017 0.309007 0.500007 0.309027 0.5 -0.809013 -0.499994 0.80902 0.309017 0.53665 -0.86831 -0.73166 51 'point symmetry operation' ? ? -0.309018 0.500004 -0.809015 0.499995 0.809018 0.309024 0.80902 -0.309009 -0.5 -0.86069 0.32876 -1.60468 52 'point symmetry operation' ? ? 0.000011 0.000013 -1 1 0.000002 0.000011 0.000002 -1 -0.000013 -1.06875 -0.00788 -1.07666 53 'point symmetry operation' ? ? -0.308998 -0.499995 -0.809027 0.499997 -0.809017 0.309021 -0.809026 -0.309025 0.499981 -0.86904 0.31527 -0.53711 54 'point symmetry operation' ? ? -0.809005 -0.309026 -0.500014 -0.309026 -0.500002 0.809012 -0.500014 0.809012 0.309007 -0.53755 0.85164 -0.73167 55 'point symmetry operation' ? ? -0.809017 0.309007 -0.500006 -0.309028 0.499999 0.809014 0.499993 0.809022 -0.309015 -0.53239 0.85997 -1.39147 56 'point symmetry operation' ? ? 0.000012 -1 -0.000002 -0.000011 -0.000002 1 -1 -0.000012 -0.000011 -0.00878 1.05997 -1.06877 57 'point symmetry operation' ? ? -0.809017 -0.309028 0.499993 0.309007 0.499999 0.809022 -0.500006 0.809014 -0.309015 0.53077 0.86026 -1.39191 58 'point symmetry operation' ? ? -0.500008 0.80901 0.309021 0.80901 0.309017 0.500011 0.309021 0.500011 -0.809009 0.33621 0.52877 -1.92828 59 'point symmetry operation' ? ? 0.499999 0.809024 -0.309001 0.809011 -0.309016 0.50001 0.309033 -0.49999 -0.809017 -0.32359 0.52361 -1.93662 60 'point symmetry operation' ? ? 0.809029 -0.309006 -0.499988 0.309009 -0.5 0.80902 -0.499986 -0.809021 -0.309029 -0.5368 0.85192 -1.40541 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 333 n n S O2 SO4 doub 334 n n S O3 SO4 sing 335 n n S O4 SO4 sing 336 n n # _atom_sites.entry_id 6THD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MYR 1 1 301 900 MYR MYR . F 6 SO4 1 1 302 951 SO4 SO4 . G 6 SO4 2 1 301 950 SO4 SO4 . H 5 MYR 4 1 101 101 MYR MYR . I 7 HOH 1 1 401 962 HOH HOH . I 7 HOH 1 2 402 999 HOH HOH . I 7 HOH 1 3 403 992 HOH HOH . I 7 HOH 1 4 404 964 HOH HOH . I 7 HOH 1 5 405 985 HOH HOH . I 7 HOH 1 6 406 987 HOH HOH . I 7 HOH 1 7 407 968 HOH HOH . I 7 HOH 1 8 408 983 HOH HOH . I 7 HOH 1 9 409 970 HOH HOH . I 7 HOH 1 10 410 973 HOH HOH . I 7 HOH 1 11 411 994 HOH HOH . I 7 HOH 1 12 412 988 HOH HOH . I 7 HOH 1 13 413 982 HOH HOH . I 7 HOH 1 14 414 998 HOH HOH . I 7 HOH 1 15 415 965 HOH HOH . I 7 HOH 1 16 416 249 HOH HOH . I 7 HOH 1 17 417 972 HOH HOH . I 7 HOH 1 18 418 963 HOH HOH . I 7 HOH 1 19 419 951 HOH HOH . I 7 HOH 1 20 420 971 HOH HOH . I 7 HOH 1 21 421 969 HOH HOH . I 7 HOH 1 22 422 1000 HOH HOH . I 7 HOH 1 23 423 995 HOH HOH . I 7 HOH 1 24 424 974 HOH HOH . I 7 HOH 1 25 425 958 HOH HOH . I 7 HOH 1 26 426 978 HOH HOH . I 7 HOH 1 27 427 986 HOH HOH . I 7 HOH 1 28 428 975 HOH HOH . I 7 HOH 1 29 429 984 HOH HOH . I 7 HOH 1 30 430 952 HOH HOH . I 7 HOH 1 31 431 966 HOH HOH . I 7 HOH 1 32 432 252 HOH HOH . I 7 HOH 1 33 433 976 HOH HOH . I 7 HOH 1 34 434 977 HOH HOH . J 7 HOH 2 1 401 968 HOH HOH . J 7 HOH 2 2 402 956 HOH HOH . J 7 HOH 2 3 403 970 HOH HOH . J 7 HOH 2 4 404 989 HOH HOH . J 7 HOH 2 5 405 262 HOH HOH . J 7 HOH 2 6 406 963 HOH HOH . J 7 HOH 2 7 407 962 HOH HOH . J 7 HOH 2 8 408 979 HOH HOH . J 7 HOH 2 9 409 995 HOH HOH . J 7 HOH 2 10 410 971 HOH HOH . J 7 HOH 2 11 411 955 HOH HOH . J 7 HOH 2 12 412 982 HOH HOH . J 7 HOH 2 13 413 961 HOH HOH . J 7 HOH 2 14 414 980 HOH HOH . J 7 HOH 2 15 415 997 HOH HOH . J 7 HOH 2 16 416 1001 HOH HOH . J 7 HOH 2 17 417 999 HOH HOH . J 7 HOH 2 18 418 959 HOH HOH . J 7 HOH 2 19 419 257 HOH HOH . J 7 HOH 2 20 420 960 HOH HOH . J 7 HOH 2 21 421 986 HOH HOH . J 7 HOH 2 22 422 987 HOH HOH . J 7 HOH 2 23 423 969 HOH HOH . J 7 HOH 2 24 424 997 HOH HOH . J 7 HOH 2 25 425 953 HOH HOH . J 7 HOH 2 26 426 964 HOH HOH . J 7 HOH 2 27 427 966 HOH HOH . J 7 HOH 2 28 428 985 HOH HOH . J 7 HOH 2 29 429 983 HOH HOH . J 7 HOH 2 30 430 988 HOH HOH . J 7 HOH 2 31 431 981 HOH HOH . J 7 HOH 2 32 432 990 HOH HOH . J 7 HOH 2 33 433 967 HOH HOH . J 7 HOH 2 34 434 957 HOH HOH . J 7 HOH 2 35 435 979 HOH HOH . J 7 HOH 2 36 436 978 HOH HOH . K 7 HOH 3 1 301 265 HOH HOH . K 7 HOH 3 2 302 250 HOH HOH . K 7 HOH 3 3 303 1000 HOH HOH . K 7 HOH 3 4 304 996 HOH HOH . K 7 HOH 3 5 305 263 HOH HOH . K 7 HOH 3 6 306 977 HOH HOH . K 7 HOH 3 7 307 270 HOH HOH . K 7 HOH 3 8 308 267 HOH HOH . K 7 HOH 3 9 309 256 HOH HOH . K 7 HOH 3 10 310 954 HOH HOH . K 7 HOH 3 11 311 261 HOH HOH . K 7 HOH 3 12 312 268 HOH HOH . K 7 HOH 3 13 313 264 HOH HOH . K 7 HOH 3 14 314 266 HOH HOH . K 7 HOH 3 15 315 258 HOH HOH . K 7 HOH 3 16 316 269 HOH HOH . K 7 HOH 3 17 317 246 HOH HOH . K 7 HOH 3 18 318 247 HOH HOH . K 7 HOH 3 19 319 245 HOH HOH . K 7 HOH 3 20 320 255 HOH HOH . K 7 HOH 3 21 321 251 HOH HOH . K 7 HOH 3 22 322 984 HOH HOH . K 7 HOH 3 23 323 243 HOH HOH . K 7 HOH 3 24 324 260 HOH HOH . K 7 HOH 3 25 325 271 HOH HOH . K 7 HOH 3 26 326 976 HOH HOH . K 7 HOH 3 27 327 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 6 6.885 9.963 137.656 1 23.46 ? S SO4 301 2 1 HETATM 2 O O1 SO4 . . . G 6 5.624 10.643 137.323 1 23.46 ? O1 SO4 301 2 1 HETATM 3 O O2 SO4 . . . G 6 7.6 9.585 136.441 1 23.46 ? O2 SO4 301 2 1 HETATM 4 O O3 SO4 . . . G 6 7.751 10.818 138.449 1 23.46 ? O3 SO4 301 2 1 HETATM 5 O O4 SO4 . . . G 6 6.554 8.785 138.45 1 23.46 ? O4 SO4 301 2 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #