data_6THE # _model_server_result.job_id tD4Ednz5rrasWKJ85jiIBA _model_server_result.datetime_utc '2025-01-13 19:52:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6the # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":520}' # _entry.id 6THE # _exptl.entry_id 6THE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 104.148 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description pentane-1,5-diol _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6THE _cell.length_a 125.141 _cell.length_b 125.141 _cell.length_c 125.141 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6THE _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 3 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 O N N ? 8 P N N ? 8 Q N N ? 8 R N N ? 8 S N N ? 8 T N N ? 8 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 13 A GLU 13 1_555 D YB YB . A YB 503 19_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc2 A O GLY 49 A GLY 49 1_555 I ER ER3 . A ER3 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.436 ? metalc ? metalc3 A N ARG 63 A ARG 63 1_555 F YB YB . A YB 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.458 ? metalc ? metalc4 A ND1 HIS 84 A HIS 84 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc5 A NE2 HIS 89 A HIS 89 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc6 A NE2 HIS 124 A HIS 124 1_555 C CU CU . A CU 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc7 A SG CYS 125 A CYS 125 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A ND1 HIS 133 A HIS 133 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc9 A SD MET 138 A MET 138 1_555 B CU CU . A CU 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc10 A OD2 ASP 154 A ASP 154 1_555 K TB TB . A TB 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc11 A OD2 ASP 167 A ASP 167 1_555 H ER ER3 . A ER3 507 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc12 A OE1 GLU 177 A GLU 177 1_555 H ER ER3 . A ER3 507 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? metalc ? metalc13 A OE1 GLU 177 A GLU 177 1_555 K TB TB . A TB 510 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc14 A OE2 GLU 177 A GLU 177 1_555 K TB TB . A TB 510 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.228 ? metalc ? metalc15 A NE2 HIS 281 A HIS 281 1_555 C CU CU . A CU 502 12_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc16 C CU CU . A CU 502 1_555 V O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc17 D YB YB . A YB 503 1_555 T O01 9JE . A 9JE 519 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 3.077 ? metalc ? metalc18 D YB YB . A YB 503 1_555 T O07 9JE . A 9JE 519 22_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc19 F YB YB . A YB 505 1_555 V O HOH . A HOH 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc20 H ER ER3 . A ER3 507 1_555 U O07 9JE . A 9JE 520 19_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.953 ? metalc ? metalc21 K TB TB . A TB 510 1_555 U O07 9JE . A 9JE 520 19_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc22 K TB TB . A TB 510 1_555 U O01 9JE . A 9JE 520 19_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc23 L Y YT3 . A YT3 511 1_555 U O07 9JE . A 9JE 520 19_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.103 ? # _chem_comp.formula 'C5 H12 O2' _chem_comp.formula_weight 104.148 _chem_comp.id 9JE _chem_comp.mon_nstd_flag . _chem_comp.name pentane-1,5-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C02 9JE sing 1 n n C02 C03 9JE sing 2 n n C03 C04 9JE sing 3 n n C04 C05 9JE sing 4 n n C05 C06 9JE sing 5 n n O07 C06 9JE sing 6 n n C02 H1 9JE sing 7 n n C02 H2 9JE sing 8 n n C03 H3 9JE sing 9 n n C03 H4 9JE sing 10 n n C04 H5 9JE sing 11 n n C04 H6 9JE sing 12 n n C05 H7 9JE sing 13 n n C05 H8 9JE sing 14 n n C06 H9 9JE sing 15 n n C06 H10 9JE sing 16 n n O01 H11 9JE sing 17 n n O07 H12 9JE sing 18 n n # _atom_sites.entry_id 6THE _atom_sites.fract_transf_matrix[1][1] 0.007991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 501 501 CU CU . C 2 CU A 1 502 502 CU CU . D 3 YB A 1 503 601 YB YB . E 3 YB A 1 504 603 YB YB . F 3 YB A 1 505 604 YB YB . G 4 ER3 A 1 506 610 ER3 ER3 . H 4 ER3 A 1 507 614 ER3 ER3 . I 4 ER3 A 1 508 615 ER3 ER3 . J 4 ER3 A 1 509 616 ER3 ER3 . K 5 TB A 1 510 620 TB TB . L 6 YT3 A 1 511 630 YT3 YT3 . M 6 YT3 A 1 512 632 YT3 YT3 . N 7 CL A 1 513 701 CL CL . O 8 9JE A 1 514 901 9JE 9JE . P 8 9JE A 1 515 1001 9JE 9JE . Q 8 9JE A 1 516 1101 9JE 9JE . R 8 9JE A 1 517 1201 9JE 9JE . S 8 9JE A 1 518 1301 9JE 9JE . T 8 9JE A 1 519 1601 9JE 9JE . U 8 9JE A 1 520 1701 9JE 9JE . V 9 HOH A 1 601 102 HOH HOH . V 9 HOH A 2 602 297 HOH HOH . V 9 HOH A 3 603 18 HOH HOH . V 9 HOH A 4 604 320 HOH HOH . V 9 HOH A 5 605 110 HOH HOH . V 9 HOH A 6 606 3 HOH HOH . V 9 HOH A 7 607 337 HOH HOH . V 9 HOH A 8 608 303 HOH HOH . V 9 HOH A 9 609 5 HOH HOH . V 9 HOH A 10 610 1 HOH HOH . V 9 HOH A 11 611 126 HOH HOH . V 9 HOH A 12 612 235 HOH HOH . V 9 HOH A 13 613 307 HOH HOH . V 9 HOH A 14 614 305 HOH HOH . V 9 HOH A 15 615 131 HOH HOH . V 9 HOH A 16 616 21 HOH HOH . V 9 HOH A 17 617 301 HOH HOH . V 9 HOH A 18 618 312 HOH HOH . V 9 HOH A 19 619 314 HOH HOH . V 9 HOH A 20 620 311 HOH HOH . V 9 HOH A 21 621 310 HOH HOH . V 9 HOH A 22 622 331 HOH HOH . V 9 HOH A 23 623 13 HOH HOH . V 9 HOH A 24 624 308 HOH HOH . V 9 HOH A 25 625 313 HOH HOH . V 9 HOH A 26 626 302 HOH HOH . V 9 HOH A 27 627 335 HOH HOH . V 9 HOH A 28 628 26 HOH HOH . V 9 HOH A 29 629 109 HOH HOH . V 9 HOH A 30 630 12 HOH HOH . V 9 HOH A 31 631 202 HOH HOH . V 9 HOH A 32 632 233 HOH HOH . V 9 HOH A 33 633 344 HOH HOH . V 9 HOH A 34 634 330 HOH HOH . V 9 HOH A 35 635 306 HOH HOH . V 9 HOH A 36 636 31 HOH HOH . V 9 HOH A 37 637 270 HOH HOH . V 9 HOH A 38 638 231 HOH HOH . V 9 HOH A 39 639 304 HOH HOH . V 9 HOH A 40 640 111 HOH HOH . V 9 HOH A 41 641 11 HOH HOH . V 9 HOH A 42 642 343 HOH HOH . V 9 HOH A 43 643 104 HOH HOH . V 9 HOH A 44 644 7 HOH HOH . V 9 HOH A 45 645 334 HOH HOH . V 9 HOH A 46 646 324 HOH HOH . V 9 HOH A 47 647 300 HOH HOH . V 9 HOH A 48 648 326 HOH HOH . V 9 HOH A 49 649 329 HOH HOH . V 9 HOH A 50 650 341 HOH HOH . V 9 HOH A 51 651 319 HOH HOH . V 9 HOH A 52 652 321 HOH HOH . V 9 HOH A 53 653 325 HOH HOH . V 9 HOH A 54 654 336 HOH HOH . V 9 HOH A 55 655 328 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 9JE . . . U 8 57.928 -24.107 45.514 1 34.27 ? C02 9JE 520 A 1 HETATM 2 C C03 9JE . . . U 8 57.141 -24.619 46.697 1 34.25 ? C03 9JE 520 A 1 HETATM 3 C C04 9JE . . . U 8 57.96 -25.444 47.666 1 34.23 ? C04 9JE 520 A 1 HETATM 4 C C05 9JE . . . U 8 58.12 -26.892 47.257 1 34.15 ? C05 9JE 520 A 1 HETATM 5 C C06 9JE . . . U 8 56.927 -27.757 47.587 1 34.1 ? C06 9JE 520 A 1 HETATM 6 O O01 9JE . . . U 8 57.776 -24.963 44.394 1 34.16 ? O01 9JE 520 A 1 HETATM 7 O O07 9JE . . . U 8 56.348 -28.307 46.416 1 34.01 ? O07 9JE 520 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 7 #