data_6THK # _model_server_result.job_id kdpR6rylxoISslogfAdP_A _model_server_result.datetime_utc '2024-12-03 04:49:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6thk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 6THK # _exptl.entry_id 6THK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.15 _cell.angle_gamma 90 _cell.entry_id 6THK _cell.length_a 50.24 _cell.length_b 53.87 _cell.length_c 104.8 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6THK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 41 A ASP 41 1_555 G ZN ZN . A ZN 606 2_856 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc2 A OD1 ASP 127 A ASP 127 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc3 A OD2 ASP 127 A ASP 127 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc4 A OE1 GLU 129 A GLU 129 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 A OE2 GLU 129 A GLU 129 1_555 F ZN ZN . A ZN 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 A OE2 GLU 145 A GLU 145 1_555 I ZN ZN . A ZN 608 2_756 ? ? ? ? ? ? ? ? ? ? ? ? 1.83 ? metalc ? metalc7 A OE2 GLU 221 A GLU 221 1_555 G ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc8 A OE2 GLU 288 A GLU 288 1_555 G ZN ZN . A ZN 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc9 A OE1 GLU 333 A GLU 333 1_555 J ZN ZN . A ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc10 A OE2 GLU 336 A GLU 336 1_555 J ZN ZN . A ZN 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc11 A NE2 HIS 371 A HIS 371 1_555 H ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc12 A OD1 ASP 383 A ASP 383 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc13 A OD2 ASP 418 A ASP 418 1_555 E ZN ZN . A ZN 604 2_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc14 A OE1 GLU 425 A GLU 425 1_555 D ZN ZN . A ZN 603 2_355 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc15 A OE2 GLU 485 A GLU 485 1_555 H ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc16 A OE1 GLU 489 A GLU 489 1_555 H ZN ZN . A ZN 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc17 A ND1 HIS 501 A HIS 501 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc18 A ND1 HIS 502 A HIS 502 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc19 A NE2 HIS 503 A HIS 503 1_555 C ZN ZN . A ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc20 A NE2 HIS 504 A HIS 504 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc21 A ND1 HIS 505 A HIS 505 1_555 E ZN ZN . A ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc22 E ZN ZN . A ZN 604 1_555 K O HOH . A HOH 777 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc23 G ZN ZN . A ZN 606 1_555 K O HOH . A HOH 770 2_846 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc24 I ZN ZN . A ZN 608 1_555 K O HOH . A HOH 781 2_746 ? ? ? ? ? ? ? ? ? ? ? ? 2.69 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 6THK _atom_sites.fract_transf_matrix[1][1] 0.019904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001794 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009581 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 601 1 GOL GOL . C 3 ZN A 1 602 1 ZN ZN . D 3 ZN A 1 603 2 ZN ZN . E 3 ZN A 1 604 3 ZN ZN . F 3 ZN A 1 605 4 ZN ZN . G 3 ZN A 1 606 5 ZN ZN . H 3 ZN A 1 607 6 ZN ZN . I 3 ZN A 1 608 7 ZN ZN . J 3 ZN A 1 609 8 ZN ZN . K 4 HOH A 1 701 4 HOH HOH . K 4 HOH A 2 702 41 HOH HOH . K 4 HOH A 3 703 7 HOH HOH . K 4 HOH A 4 704 25 HOH HOH . K 4 HOH A 5 705 18 HOH HOH . K 4 HOH A 6 706 50 HOH HOH . K 4 HOH A 7 707 39 HOH HOH . K 4 HOH A 8 708 10 HOH HOH . K 4 HOH A 9 709 17 HOH HOH . K 4 HOH A 10 710 51 HOH HOH . K 4 HOH A 11 711 28 HOH HOH . K 4 HOH A 12 712 5 HOH HOH . K 4 HOH A 13 713 24 HOH HOH . K 4 HOH A 14 714 15 HOH HOH . K 4 HOH A 15 715 12 HOH HOH . K 4 HOH A 16 716 109 HOH HOH . K 4 HOH A 17 717 16 HOH HOH . K 4 HOH A 18 718 8 HOH HOH . K 4 HOH A 19 719 30 HOH HOH . K 4 HOH A 20 720 58 HOH HOH . K 4 HOH A 21 721 60 HOH HOH . K 4 HOH A 22 722 49 HOH HOH . K 4 HOH A 23 723 40 HOH HOH . K 4 HOH A 24 724 3 HOH HOH . K 4 HOH A 25 725 88 HOH HOH . K 4 HOH A 26 726 35 HOH HOH . K 4 HOH A 27 727 33 HOH HOH . K 4 HOH A 28 728 27 HOH HOH . K 4 HOH A 29 729 23 HOH HOH . K 4 HOH A 30 730 44 HOH HOH . K 4 HOH A 31 731 1 HOH HOH . K 4 HOH A 32 732 9 HOH HOH . K 4 HOH A 33 733 95 HOH HOH . K 4 HOH A 34 734 19 HOH HOH . K 4 HOH A 35 735 59 HOH HOH . K 4 HOH A 36 736 43 HOH HOH . K 4 HOH A 37 737 56 HOH HOH . K 4 HOH A 38 738 57 HOH HOH . K 4 HOH A 39 739 14 HOH HOH . K 4 HOH A 40 740 10 HOH HOH . K 4 HOH A 41 741 38 HOH HOH . K 4 HOH A 42 742 5 HOH HOH . K 4 HOH A 43 743 46 HOH HOH . K 4 HOH A 44 744 26 HOH HOH . K 4 HOH A 45 745 37 HOH HOH . K 4 HOH A 46 746 34 HOH HOH . K 4 HOH A 47 747 93 HOH HOH . K 4 HOH A 48 748 20 HOH HOH . K 4 HOH A 49 749 19 HOH HOH . K 4 HOH A 50 750 2 HOH HOH . K 4 HOH A 51 751 13 HOH HOH . K 4 HOH A 52 752 29 HOH HOH . K 4 HOH A 53 753 14 HOH HOH . K 4 HOH A 54 754 15 HOH HOH . K 4 HOH A 55 755 2 HOH HOH . K 4 HOH A 56 756 78 HOH HOH . K 4 HOH A 57 757 45 HOH HOH . K 4 HOH A 58 758 86 HOH HOH . K 4 HOH A 59 759 12 HOH HOH . K 4 HOH A 60 760 31 HOH HOH . K 4 HOH A 61 761 21 HOH HOH . K 4 HOH A 62 762 16 HOH HOH . K 4 HOH A 63 763 54 HOH HOH . K 4 HOH A 64 764 69 HOH HOH . K 4 HOH A 65 765 47 HOH HOH . K 4 HOH A 66 766 55 HOH HOH . K 4 HOH A 67 767 100 HOH HOH . K 4 HOH A 68 768 52 HOH HOH . K 4 HOH A 69 769 74 HOH HOH . K 4 HOH A 70 770 8 HOH HOH . K 4 HOH A 71 771 32 HOH HOH . K 4 HOH A 72 772 98 HOH HOH . K 4 HOH A 73 773 11 HOH HOH . K 4 HOH A 74 774 6 HOH HOH . K 4 HOH A 75 775 77 HOH HOH . K 4 HOH A 76 776 97 HOH HOH . K 4 HOH A 77 777 3 HOH HOH . K 4 HOH A 78 778 18 HOH HOH . K 4 HOH A 79 779 105 HOH HOH . K 4 HOH A 80 780 48 HOH HOH . K 4 HOH A 81 781 17 HOH HOH . K 4 HOH A 82 782 22 HOH HOH . K 4 HOH A 83 783 42 HOH HOH . K 4 HOH A 84 784 53 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 -54.714 17.037 5.034 1 54.5 ? C1 GOL 601 A 1 HETATM 2 O O1 GOL . . . B 2 -55.237 15.709 5.175 1 49.88 ? O1 GOL 601 A 1 HETATM 3 C C2 GOL . . . B 2 -55.713 17.958 4.371 1 54.21 ? C2 GOL 601 A 1 HETATM 4 O O2 GOL . . . B 2 -56.564 18.542 5.363 1 58.6 ? O2 GOL 601 A 1 HETATM 5 C C3 GOL . . . B 2 -54.972 19.061 3.657 1 45.87 ? C3 GOL 601 A 1 HETATM 6 O O3 GOL . . . B 2 -55.833 19.704 2.726 1 40.15 ? O3 GOL 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 6 #