data_6TIR # _model_server_result.job_id u50MVHzVuNIWikSB2XTHXA _model_server_result.datetime_utc '2024-11-05 16:21:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6TIR # _exptl.entry_id 6TIR _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 235 n n PA O2A NAI sing 236 n n PA O5B NAI sing 237 n n PA O3 NAI sing 238 n n O2A HOA2 NAI sing 239 n n O5B C5B NAI sing 240 n n C5B C4B NAI sing 241 n n C5B H51A NAI sing 242 n n C5B H52A NAI sing 243 n n C4B O4B NAI sing 244 n n C4B C3B NAI sing 245 n n C4B H4B NAI sing 246 n n O4B C1B NAI sing 247 n n C3B O3B NAI sing 248 n n C3B C2B NAI sing 249 n n C3B H3B NAI sing 250 n n O3B HO3A NAI sing 251 n n C2B O2B NAI sing 252 n n C2B C1B NAI sing 253 n n C2B H2B NAI sing 254 n n O2B HO2A NAI sing 255 n n C1B N9A NAI sing 256 n n C1B H1B NAI sing 257 n n N9A C8A NAI sing 258 n y N9A C4A NAI sing 259 n y C8A N7A NAI doub 260 n y C8A H8A NAI sing 261 n n N7A C5A NAI sing 262 n y C5A C6A NAI sing 263 n y C5A C4A NAI doub 264 n y C6A N6A NAI sing 265 n n C6A N1A NAI doub 266 n y N6A H61A NAI sing 267 n n N6A H62A NAI sing 268 n n N1A C2A NAI sing 269 n y C2A N3A NAI doub 270 n y C2A H2A NAI sing 271 n n N3A C4A NAI sing 272 n y O3 PN NAI sing 273 n n PN O1N NAI sing 274 n n PN O2N NAI doub 275 n n PN O5D NAI sing 276 n n O1N HO1N NAI sing 277 n n O5D C5D NAI sing 278 n n C5D C4D NAI sing 279 n n C5D H51N NAI sing 280 n n C5D H52N NAI sing 281 n n C4D O4D NAI sing 282 n n C4D C3D NAI sing 283 n n C4D H4D NAI sing 284 n n O4D C1D NAI sing 285 n n C3D O3D NAI sing 286 n n C3D C2D NAI sing 287 n n C3D H3D NAI sing 288 n n O3D HO3N NAI sing 289 n n C2D O2D NAI sing 290 n n C2D C1D NAI sing 291 n n C2D H2D NAI sing 292 n n O2D HO2N NAI sing 293 n n C1D N1N NAI sing 294 n n C1D H1D NAI sing 295 n n N1N C2N NAI sing 296 n n N1N C6N NAI sing 297 n n C2N C3N NAI doub 298 n n C2N H2N NAI sing 299 n n C3N C7N NAI sing 300 n n C3N C4N NAI sing 301 n n C7N O7N NAI doub 302 n n C7N N7N NAI sing 303 n n N7N H71N NAI sing 304 n n N7N H72N NAI sing 305 n n C4N C5N NAI sing 306 n n C4N H4N NAI sing 307 n n C4N H42N NAI sing 308 n n C5N C6N NAI doub 309 n n C5N H5N NAI sing 310 n n C6N H6N NAI sing 311 n n # _atom_sites.entry_id 6TIR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NAI _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 301 _pdbx_nonpoly_scheme.pdb_mon_id NAI _pdbx_nonpoly_scheme.auth_mon_id NAI _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 4.218 35.905 1.813 1 42.12 ? PA NAI 301 A 1 HETATM 2 O O1A NAI . . . B 2 5.603 36.422 1.731 1 73.12 ? O1A NAI 301 A 1 HETATM 3 O O2A NAI . . . B 2 3.937 35.356 3.3 1 62.13 ? O2A NAI 301 A 1 HETATM 4 O O5B NAI . . . B 2 4.028 34.708 0.753 1 45.23 ? O5B NAI 301 A 1 HETATM 5 C C5B NAI . . . B 2 4.992 33.707 1.084 1 64.32 ? C5B NAI 301 A 1 HETATM 6 C C4B NAI . . . B 2 4.412 32.771 2.146 1 5 ? C4B NAI 301 A 1 HETATM 7 O O4B NAI . . . B 2 4.276 31.445 1.608 1 51.32 ? O4B NAI 301 A 1 HETATM 8 C C3B NAI . . . B 2 5.372 32.685 3.348 1 11.21 ? C3B NAI 301 A 1 HETATM 9 O O3B NAI . . . B 2 4.728 33.135 4.543 1 43.42 ? O3B NAI 301 A 1 HETATM 10 C C2B NAI . . . B 2 5.711 31.175 3.451 1 23.03 ? C2B NAI 301 A 1 HETATM 11 O O2B NAI . . . B 2 5.735 30.75 4.815 1 12.12 ? O2B NAI 301 A 1 HETATM 12 C C1B NAI . . . B 2 4.528 30.523 2.69 1 3.33 ? C1B NAI 301 A 1 HETATM 13 N N9A NAI . . . B 2 4.908 29.208 2.169 1 11 ? N9A NAI 301 A 1 HETATM 14 C C8A NAI . . . B 2 4.412 28.004 2.577 1 3.33 ? C8A NAI 301 A 1 HETATM 15 N N7A NAI . . . B 2 4.971 27.042 1.901 1 52 ? N7A NAI 301 A 1 HETATM 16 C C5A NAI . . . B 2 5.856 27.565 1.019 1 21.14 ? C5A NAI 301 A 1 HETATM 17 C C6A NAI . . . B 2 6.725 27.027 0.055 1 50.5 ? C6A NAI 301 A 1 HETATM 18 N N6A NAI . . . B 2 6.797 25.661 -0.149 1 70.32 ? N6A NAI 301 A 1 HETATM 19 N N1A NAI . . . B 2 7.476 27.862 -0.657 1 31.41 ? N1A NAI 301 A 1 HETATM 20 C C2A NAI . . . B 2 7.413 29.167 -0.47 1 22.45 ? C2A NAI 301 A 1 HETATM 21 N N3A NAI . . . B 2 6.614 29.716 0.422 1 63.11 ? N3A NAI 301 A 1 HETATM 22 C C4A NAI . . . B 2 5.822 28.961 1.177 1 44.34 ? C4A NAI 301 A 1 HETATM 23 O O3 NAI . . . B 2 3.182 37.091 1.474 1 61.11 ? O3 NAI 301 A 1 HETATM 24 P PN NAI . . . B 2 3.647 37.728 0.07 1 2.45 ? PN NAI 301 A 1 HETATM 25 O O1N NAI . . . B 2 4.948 38.413 0.246 1 24.52 ? O1N NAI 301 A 1 HETATM 26 O O2N NAI . . . B 2 3.8 36.559 -1.026 1 33.45 ? O2N NAI 301 A 1 HETATM 27 O O5D NAI . . . B 2 2.546 38.791 -0.428 1 73.23 ? O5D NAI 301 A 1 HETATM 28 C C5D NAI . . . B 2 2.025 39.426 0.741 1 63.23 ? C5D NAI 301 A 1 HETATM 29 C C4D NAI . . . B 2 1.119 40.588 0.33 1 44.03 ? C4D NAI 301 A 1 HETATM 30 O O4D NAI . . . B 2 -0.073 40.092 -0.318 1 22.42 ? O4D NAI 301 A 1 HETATM 31 C C3D NAI . . . B 2 0.607 41.342 1.577 1 71.4 ? C3D NAI 301 A 1 HETATM 32 O O3D NAI . . . B 2 1.394 42.509 1.815 1 51.54 ? O3D NAI 301 A 1 HETATM 33 C C2D NAI . . . B 2 -0.846 41.73 1.211 1 4.51 ? C2D NAI 301 A 1 HETATM 34 O O2D NAI . . . B 2 -0.999 43.152 1.215 1 70.23 ? O2D NAI 301 A 1 HETATM 35 C C1D NAI . . . B 2 -1.037 41.162 -0.213 1 1.32 ? C1D NAI 301 A 1 HETATM 36 N N1N NAI . . . B 2 -2.397 40.643 -0.375 1 63.44 ? N1N NAI 301 A 1 HETATM 37 C C2N NAI . . . B 2 -2.684 39.356 -0.017 1 63.34 ? C2N NAI 301 A 1 HETATM 38 C C3N NAI . . . B 2 -3.958 38.969 0.176 1 43.11 ? C3N NAI 301 A 1 HETATM 39 C C7N NAI . . . B 2 -4.228 37.629 0.537 1 35.45 ? C7N NAI 301 A 1 HETATM 40 O O7N NAI . . . B 2 -3.312 36.838 0.671 1 22.34 ? O7N NAI 301 A 1 HETATM 41 N N7N NAI . . . B 2 -5.5 37.227 0.734 1 62.33 ? N7N NAI 301 A 1 HETATM 42 C C4N NAI . . . B 2 -5.1 39.931 0.01 1 63.12 ? C4N NAI 301 A 1 HETATM 43 C C5N NAI . . . B 2 -4.664 41.159 -0.734 1 30.02 ? C5N NAI 301 A 1 HETATM 44 C C6N NAI . . . B 2 -3.394 41.459 -0.893 1 72.3 ? C6N NAI 301 A 1 HETATM 45 H HOA2 NAI . . . B 2 3.027 35.03 3.31 1 33.41 ? HOA2 NAI 301 A 1 HETATM 46 H H51A NAI . . . B 2 5.241 33.133 0.191 1 71.1 ? H51A NAI 301 A 1 HETATM 47 H H52A NAI . . . B 2 5.894 34.183 1.471 1 13.13 ? H52A NAI 301 A 1 HETATM 48 H H4B NAI . . . B 2 3.44 33.14 2.473 1 50.11 ? H4B NAI 301 A 1 HETATM 49 H H3B NAI . . . B 2 6.273 33.266 3.159 1 1.45 ? H3B NAI 301 A 1 HETATM 50 H HO3A NAI . . . B 2 5.357 33 5.266 1 33.22 ? HO3A NAI 301 A 1 HETATM 51 H H2B NAI . . . B 2 6.659 30.954 2.96 1 73.25 ? H2B NAI 301 A 1 HETATM 52 H HO2A NAI . . . B 2 6.49 31.188 5.231 1 62.1 ? HO2A NAI 301 A 1 HETATM 53 H H1B NAI . . . B 2 3.655 30.442 3.336 1 74.31 ? H1B NAI 301 A 1 HETATM 54 H H8A NAI . . . B 2 3.668 27.87 3.348 1 64.24 ? H8A NAI 301 A 1 HETATM 55 H H61A NAI . . . B 2 6.244 25.061 0.376 1 53.31 ? H61A NAI 301 A 1 HETATM 56 H H62A NAI . . . B 2 7.401 25.301 -0.818 1 72.23 ? H62A NAI 301 A 1 HETATM 57 H H2A NAI . . . B 2 8.041 29.809 -1.069 1 62.33 ? H2A NAI 301 A 1 HETATM 58 H H51N NAI . . . B 2 2.849 39.804 1.347 1 33.21 ? H51N NAI 301 A 1 HETATM 59 H H52N NAI . . . B 2 1.449 38.704 1.32 1 21.54 ? H52N NAI 301 A 1 HETATM 60 H H4D NAI . . . B 2 1.655 41.269 -0.332 1 13.31 ? H4D NAI 301 A 1 HETATM 61 H H3D NAI . . . B 2 0.62 40.689 2.449 1 74.31 ? H3D NAI 301 A 1 HETATM 62 H HO3N NAI . . . B 2 1.029 42.937 2.602 1 42.13 ? HO3N NAI 301 A 1 HETATM 63 H H2D NAI . . . B 2 -1.55 41.269 1.903 1 44.5 ? H2D NAI 301 A 1 HETATM 64 H HO2N NAI . . . B 2 -0.808 43.451 2.114 1 11.41 ? HO2N NAI 301 A 1 HETATM 65 H H1D NAI . . . B 2 -0.834 41.93 -0.958 1 43.42 ? H1D NAI 301 A 1 HETATM 66 H H2N NAI . . . B 2 -1.881 38.644 0.114 1 55.14 ? H2N NAI 301 A 1 HETATM 67 H H71N NAI . . . B 2 -5.685 36.307 0.982 1 52.11 ? H71N NAI 301 A 1 HETATM 68 H H72N NAI . . . B 2 -6.229 37.858 0.631 1 1.13 ? H72N NAI 301 A 1 HETATM 69 H H4N NAI . . . B 2 -5.907 39.447 -0.541 1 64.43 ? H4N NAI 301 A 1 HETATM 70 H H42N NAI . . . B 2 -5.462 40.219 0.996 1 73.14 ? H42N NAI 301 A 1 HETATM 71 H H5N NAI . . . B 2 -5.414 41.813 -1.153 1 34.2 ? H5N NAI 301 A 1 HETATM 72 H H6N NAI . . . B 2 -3.122 42.353 -1.434 1 44.14 ? H6N NAI 301 A 1 HETATM 73 H HO5C NAI . . . B 2 2.932 36.139 -1.109 1 45.23 ? HO5C NAI 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 2903 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 73 #