data_6TIU # _model_server_result.job_id FLOR0VdaUOSsauJmcjetgg _model_server_result.datetime_utc '2024-11-15 13:11:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":501}' # _entry.id 6TIU # _exptl.entry_id 6TIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TIU _cell.length_a 65.97 _cell.length_b 126.35 _cell.length_c 249.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 I N N ? 4 N N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F O1G GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc2 F O1B GTP . A GTP 501 1_555 G MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 I O1B GTP . B GTP 501 1_555 J MG MG . B MG 502 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.823 ? metalc ? metalc4 N O1G GTP . C GTP 600 1_555 O MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 N O1B GTP . C GTP 600 1_555 O MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc6 P O1B GTP . D GTP 501 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 6TIU _atom_sites.fract_transf_matrix[1][1] 0.015158 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007915 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 GTP A 1 501 600 GTP GTP . G 5 MG A 1 502 601 MG MG . H 6 SO4 A 1 503 2 SO4 SO4 . I 4 GTP B 1 501 600 GTP GTP . J 5 MG B 1 502 601 MG MG . K 7 GDP B 1 503 700 GDP GDP . L 6 SO4 B 1 504 3 SO4 SO4 . M 6 SO4 B 1 505 9 SO4 SO4 . N 4 GTP C 1 600 600 GTP GTP . O 5 MG C 1 601 601 MG MG . P 4 GTP D 1 501 600 GTP GTP . Q 5 MG D 1 502 601 MG MG . R 6 SO4 D 1 503 1 SO4 SO4 . S 6 SO4 D 1 504 4 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . P 4 -47.272 156.005 114.739 1 89.47 ? PG GTP 501 D 1 HETATM 2 O O1G GTP . . . P 4 -46.56 156.983 115.732 1 91.23 ? O1G GTP 501 D 1 HETATM 3 O O2G GTP . . . P 4 -47.202 156.587 113.239 1 92.21 ? O2G GTP 501 D 1 HETATM 4 O O3G GTP . . . P 4 -48.722 155.706 115.168 1 85.42 ? O3G GTP 501 D 1 HETATM 5 O O3B GTP . . . P 4 -46.682 154.515 114.776 1 89.47 ? O3B GTP 501 D 1 HETATM 6 P PB GTP . . . P 4 -45.166 154.064 114.993 1 84.01 ? PB GTP 501 D 1 HETATM 7 O O1B GTP . . . P 4 -44.387 155.014 114.161 1 85.35 ? O1B GTP 501 D 1 HETATM 8 O O2B GTP . . . P 4 -44.753 152.583 114.667 1 82.19 ? O2B GTP 501 D 1 HETATM 9 O O3A GTP . . . P 4 -44.877 154.328 116.542 1 84.72 ? O3A GTP 501 D 1 HETATM 10 P PA GTP . . . P 4 -43.56 154.075 117.402 1 87.5 ? PA GTP 501 D 1 HETATM 11 O O1A GTP . . . P 4 -42.984 155.385 117.76 1 87.52 ? O1A GTP 501 D 1 HETATM 12 O O2A GTP . . . P 4 -42.546 153.307 116.535 1 88.9 ? O2A GTP 501 D 1 HETATM 13 O O5' GTP . . . P 4 -44.031 153.059 118.588 1 86.55 ? O5' GTP 501 D 1 HETATM 14 C C5' GTP . . . P 4 -44.054 153.368 119.999 1 85.43 ? C5' GTP 501 D 1 HETATM 15 C C4' GTP . . . P 4 -43.191 152.324 120.667 1 85.9 ? C4' GTP 501 D 1 HETATM 16 O O4' GTP . . . P 4 -41.866 152.357 120.092 1 82.94 ? O4' GTP 501 D 1 HETATM 17 C C3' GTP . . . P 4 -42.991 152.448 122.178 1 85.58 ? C3' GTP 501 D 1 HETATM 18 O O3' GTP . . . P 4 -42.826 151.155 122.76 1 88.23 ? O3' GTP 501 D 1 HETATM 19 C C2' GTP . . . P 4 -41.691 153.253 122.28 1 86.79 ? C2' GTP 501 D 1 HETATM 20 O O2' GTP . . . P 4 -41.039 153.053 123.539 1 85.81 ? O2' GTP 501 D 1 HETATM 21 C C1' GTP . . . P 4 -40.91 152.673 121.09 1 84.81 ? C1' GTP 501 D 1 HETATM 22 N N9 GTP . . . P 4 -39.9 153.569 120.494 1 86.32 ? N9 GTP 501 D 1 HETATM 23 C C8 GTP . . . P 4 -40.127 154.694 119.75 1 90.22 ? C8 GTP 501 D 1 HETATM 24 N N7 GTP . . . P 4 -39.036 155.197 119.227 1 93.59 ? N7 GTP 501 D 1 HETATM 25 C C5 GTP . . . P 4 -38.025 154.356 119.667 1 89.64 ? C5 GTP 501 D 1 HETATM 26 C C6 GTP . . . P 4 -36.607 154.377 119.436 1 89.99 ? C6 GTP 501 D 1 HETATM 27 O O6 GTP . . . P 4 -35.98 155.176 118.748 1 92.84 ? O6 GTP 501 D 1 HETATM 28 N N1 GTP . . . P 4 -35.95 153.366 120.107 1 89.95 ? N1 GTP 501 D 1 HETATM 29 C C2 GTP . . . P 4 -36.551 152.449 120.921 1 88.53 ? C2 GTP 501 D 1 HETATM 30 N N2 GTP . . . P 4 -35.748 151.621 121.592 1 90.78 ? N2 GTP 501 D 1 HETATM 31 N N3 GTP . . . P 4 -37.866 152.395 121.12 1 87.78 ? N3 GTP 501 D 1 HETATM 32 C C4 GTP . . . P 4 -38.538 153.365 120.462 1 88.8 ? C4 GTP 501 D 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #