data_6TJB # _model_server_result.job_id dYxlEHw-VXcLjGvb_CtGaQ _model_server_result.datetime_utc '2024-11-22 23:36:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tjb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":101}' # _entry.id 6TJB # _exptl.entry_id 6TJB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TJB _cell.length_a 68.888 _cell.length_b 69.188 _cell.length_c 82.871 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TJB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 97 n n C1 C2 GOL sing 98 n n C1 H11 GOL sing 99 n n C1 H12 GOL sing 100 n n O1 HO1 GOL sing 101 n n C2 O2 GOL sing 102 n n C2 C3 GOL sing 103 n n C2 H2 GOL sing 104 n n O2 HO2 GOL sing 105 n n C3 O3 GOL sing 106 n n C3 H31 GOL sing 107 n n C3 H32 GOL sing 108 n n O3 HO3 GOL sing 109 n n # _atom_sites.entry_id 6TJB _atom_sites.fract_transf_matrix[1][1] 0.014516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014453 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 GOL B 1 101 1 GOL GOL . G 3 HOH A 1 101 4 HOH HOH . G 3 HOH A 2 102 16 HOH HOH . G 3 HOH A 3 103 40 HOH HOH . G 3 HOH A 4 104 100 HOH HOH . G 3 HOH A 5 105 78 HOH HOH . G 3 HOH A 6 106 7 HOH HOH . G 3 HOH A 7 107 32 HOH HOH . G 3 HOH A 8 108 109 HOH HOH . G 3 HOH A 9 109 19 HOH HOH . G 3 HOH A 10 110 120 HOH HOH . G 3 HOH A 11 111 42 HOH HOH . G 3 HOH A 12 112 103 HOH HOH . G 3 HOH A 13 113 73 HOH HOH . H 3 HOH B 1 201 20 HOH HOH . H 3 HOH B 2 202 82 HOH HOH . H 3 HOH B 3 203 35 HOH HOH . H 3 HOH B 4 204 31 HOH HOH . H 3 HOH B 5 205 112 HOH HOH . H 3 HOH B 6 206 18 HOH HOH . H 3 HOH B 7 207 113 HOH HOH . H 3 HOH B 8 208 29 HOH HOH . H 3 HOH B 9 209 89 HOH HOH . H 3 HOH B 10 210 26 HOH HOH . H 3 HOH B 11 211 25 HOH HOH . H 3 HOH B 12 212 6 HOH HOH . H 3 HOH B 13 213 1 HOH HOH . H 3 HOH B 14 214 68 HOH HOH . H 3 HOH B 15 215 5 HOH HOH . H 3 HOH B 16 216 52 HOH HOH . H 3 HOH B 17 217 45 HOH HOH . H 3 HOH B 18 218 123 HOH HOH . H 3 HOH B 19 219 50 HOH HOH . H 3 HOH B 20 220 71 HOH HOH . H 3 HOH B 21 221 67 HOH HOH . H 3 HOH B 22 222 51 HOH HOH . H 3 HOH B 23 223 43 HOH HOH . H 3 HOH B 24 224 53 HOH HOH . H 3 HOH B 25 225 3 HOH HOH . H 3 HOH B 26 226 36 HOH HOH . H 3 HOH B 27 227 12 HOH HOH . H 3 HOH B 28 228 38 HOH HOH . H 3 HOH B 29 229 104 HOH HOH . H 3 HOH B 30 230 15 HOH HOH . H 3 HOH B 31 231 62 HOH HOH . H 3 HOH B 32 232 80 HOH HOH . H 3 HOH B 33 233 75 HOH HOH . H 3 HOH B 34 234 125 HOH HOH . H 3 HOH B 35 235 110 HOH HOH . H 3 HOH B 36 236 70 HOH HOH . H 3 HOH B 37 237 129 HOH HOH . I 3 HOH C 1 101 60 HOH HOH . I 3 HOH C 2 102 96 HOH HOH . I 3 HOH C 3 103 107 HOH HOH . I 3 HOH C 4 104 93 HOH HOH . I 3 HOH C 5 105 88 HOH HOH . I 3 HOH C 6 106 54 HOH HOH . I 3 HOH C 7 107 33 HOH HOH . I 3 HOH C 8 108 72 HOH HOH . I 3 HOH C 9 109 11 HOH HOH . I 3 HOH C 10 110 128 HOH HOH . I 3 HOH C 11 111 34 HOH HOH . I 3 HOH C 12 112 2 HOH HOH . I 3 HOH C 13 113 81 HOH HOH . I 3 HOH C 14 114 65 HOH HOH . I 3 HOH C 15 115 17 HOH HOH . I 3 HOH C 16 116 115 HOH HOH . I 3 HOH C 17 117 8 HOH HOH . I 3 HOH C 18 118 37 HOH HOH . I 3 HOH C 19 119 77 HOH HOH . I 3 HOH C 20 120 124 HOH HOH . I 3 HOH C 21 121 83 HOH HOH . I 3 HOH C 22 122 55 HOH HOH . I 3 HOH C 23 123 98 HOH HOH . I 3 HOH C 24 124 21 HOH HOH . I 3 HOH C 25 125 24 HOH HOH . I 3 HOH C 26 126 23 HOH HOH . I 3 HOH C 27 127 94 HOH HOH . I 3 HOH C 28 128 114 HOH HOH . I 3 HOH C 29 129 57 HOH HOH . I 3 HOH C 30 130 90 HOH HOH . I 3 HOH C 31 131 86 HOH HOH . I 3 HOH C 32 132 121 HOH HOH . I 3 HOH C 33 133 64 HOH HOH . I 3 HOH C 34 134 119 HOH HOH . J 3 HOH D 1 101 85 HOH HOH . J 3 HOH D 2 102 61 HOH HOH . J 3 HOH D 3 103 44 HOH HOH . J 3 HOH D 4 104 108 HOH HOH . J 3 HOH D 5 105 58 HOH HOH . J 3 HOH D 6 106 13 HOH HOH . J 3 HOH D 7 107 39 HOH HOH . J 3 HOH D 8 108 41 HOH HOH . J 3 HOH D 9 109 27 HOH HOH . J 3 HOH D 10 110 47 HOH HOH . J 3 HOH D 11 111 30 HOH HOH . J 3 HOH D 12 112 127 HOH HOH . J 3 HOH D 13 113 69 HOH HOH . J 3 HOH D 14 114 28 HOH HOH . J 3 HOH D 15 115 76 HOH HOH . K 3 HOH E 1 101 117 HOH HOH . K 3 HOH E 2 102 14 HOH HOH . K 3 HOH E 3 103 66 HOH HOH . K 3 HOH E 4 104 74 HOH HOH . K 3 HOH E 5 105 95 HOH HOH . K 3 HOH E 6 106 106 HOH HOH . K 3 HOH E 7 107 122 HOH HOH . K 3 HOH E 8 108 56 HOH HOH . K 3 HOH E 9 109 91 HOH HOH . K 3 HOH E 10 110 118 HOH HOH . K 3 HOH E 11 111 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 2 16.276 -15.455 1.456 0.95 47.49 ? C1 GOL 101 B 1 HETATM 2 O O1 GOL . . . F 2 16.676 -14.775 2.615 0.95 44.45 ? O1 GOL 101 B 1 HETATM 3 C C2 GOL . . . F 2 17.546 -16.079 0.824 0.95 50.95 ? C2 GOL 101 B 1 HETATM 4 O O2 GOL . . . F 2 18.578 -15.151 0.69 0.95 46.24 ? O2 GOL 101 B 1 HETATM 5 C C3 GOL . . . F 2 17.068 -16.641 -0.536 0.95 49.81 ? C3 GOL 101 B 1 HETATM 6 O O3 GOL . . . F 2 16.617 -17.944 -0.308 0.95 53.23 ? O3 GOL 101 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 6 #