data_6TJF # _model_server_result.job_id C4EZcWg37QzKaXkda9HrxQ _model_server_result.datetime_utc '2024-11-05 00:04:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 6TJF # _exptl.entry_id 6TJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 75.251 _cell.angle_beta 66.137 _cell.angle_gamma 66.137 _cell.entry_id 6TJF _cell.length_a 68.812 _cell.length_b 79.67 _cell.length_c 79.67 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,K,L,M,N,R,S 1 1 B,C,D,H,I,J,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 97 n n C1 C2 GOL sing 98 n n C1 H11 GOL sing 99 n n C1 H12 GOL sing 100 n n O1 HO1 GOL sing 101 n n C2 O2 GOL sing 102 n n C2 C3 GOL sing 103 n n C2 H2 GOL sing 104 n n O2 HO2 GOL sing 105 n n C3 O3 GOL sing 106 n n C3 H31 GOL sing 107 n n C3 H32 GOL sing 108 n n O3 HO3 GOL sing 109 n n # _atom_sites.entry_id 6TJF _atom_sites.fract_transf_matrix[1][1] 0.014532 _atom_sites.fract_transf_matrix[1][2] -0.006429 _atom_sites.fract_transf_matrix[1][3] -0.005764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013725 _atom_sites.fract_transf_matrix[2][3] -0.001501 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013807 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 301 1 GOL GOL . H 2 GOL B 1 301 5 GOL GOL . I 2 GOL C 1 301 6 GOL GOL . J 2 GOL D 1 301 7 GOL GOL . K 2 GOL E 1 301 2 GOL GOL . L 2 GOL E 1 302 3 GOL GOL . M 2 GOL E 1 303 4 GOL GOL . N 3 HOH A 1 401 72 HOH HOH . N 3 HOH A 2 402 265 HOH HOH . N 3 HOH A 3 403 296 HOH HOH . N 3 HOH A 4 404 257 HOH HOH . N 3 HOH A 5 405 19 HOH HOH . N 3 HOH A 6 406 77 HOH HOH . N 3 HOH A 7 407 278 HOH HOH . N 3 HOH A 8 408 38 HOH HOH . N 3 HOH A 9 409 173 HOH HOH . N 3 HOH A 10 410 4 HOH HOH . N 3 HOH A 11 411 279 HOH HOH . N 3 HOH A 12 412 33 HOH HOH . N 3 HOH A 13 413 98 HOH HOH . N 3 HOH A 14 414 27 HOH HOH . N 3 HOH A 15 415 236 HOH HOH . N 3 HOH A 16 416 55 HOH HOH . N 3 HOH A 17 417 159 HOH HOH . N 3 HOH A 18 418 8 HOH HOH . N 3 HOH A 19 419 44 HOH HOH . N 3 HOH A 20 420 201 HOH HOH . N 3 HOH A 21 421 250 HOH HOH . N 3 HOH A 22 422 282 HOH HOH . N 3 HOH A 23 423 254 HOH HOH . N 3 HOH A 24 424 49 HOH HOH . N 3 HOH A 25 425 13 HOH HOH . N 3 HOH A 26 426 330 HOH HOH . N 3 HOH A 27 427 48 HOH HOH . N 3 HOH A 28 428 83 HOH HOH . N 3 HOH A 29 429 374 HOH HOH . N 3 HOH A 30 430 205 HOH HOH . N 3 HOH A 31 431 349 HOH HOH . N 3 HOH A 32 432 62 HOH HOH . N 3 HOH A 33 433 318 HOH HOH . N 3 HOH A 34 434 28 HOH HOH . N 3 HOH A 35 435 169 HOH HOH . N 3 HOH A 36 436 26 HOH HOH . N 3 HOH A 37 437 207 HOH HOH . N 3 HOH A 38 438 25 HOH HOH . N 3 HOH A 39 439 255 HOH HOH . N 3 HOH A 40 440 151 HOH HOH . N 3 HOH A 41 441 363 HOH HOH . N 3 HOH A 42 442 148 HOH HOH . N 3 HOH A 43 443 243 HOH HOH . N 3 HOH A 44 444 345 HOH HOH . N 3 HOH A 45 445 365 HOH HOH . N 3 HOH A 46 446 373 HOH HOH . N 3 HOH A 47 447 203 HOH HOH . N 3 HOH A 48 448 364 HOH HOH . N 3 HOH A 49 449 375 HOH HOH . N 3 HOH A 50 450 323 HOH HOH . N 3 HOH A 51 451 216 HOH HOH . N 3 HOH A 52 452 164 HOH HOH . O 3 HOH B 1 401 106 HOH HOH . O 3 HOH B 2 402 118 HOH HOH . O 3 HOH B 3 403 24 HOH HOH . O 3 HOH B 4 404 104 HOH HOH . O 3 HOH B 5 405 71 HOH HOH . O 3 HOH B 6 406 228 HOH HOH . O 3 HOH B 7 407 331 HOH HOH . O 3 HOH B 8 408 256 HOH HOH . O 3 HOH B 9 409 175 HOH HOH . O 3 HOH B 10 410 3 HOH HOH . O 3 HOH B 11 411 241 HOH HOH . O 3 HOH B 12 412 219 HOH HOH . O 3 HOH B 13 413 105 HOH HOH . O 3 HOH B 14 414 52 HOH HOH . O 3 HOH B 15 415 332 HOH HOH . O 3 HOH B 16 416 287 HOH HOH . O 3 HOH B 17 417 58 HOH HOH . O 3 HOH B 18 418 167 HOH HOH . O 3 HOH B 19 419 218 HOH HOH . O 3 HOH B 20 420 143 HOH HOH . O 3 HOH B 21 421 180 HOH HOH . O 3 HOH B 22 422 303 HOH HOH . O 3 HOH B 23 423 229 HOH HOH . O 3 HOH B 24 424 223 HOH HOH . O 3 HOH B 25 425 89 HOH HOH . O 3 HOH B 26 426 237 HOH HOH . O 3 HOH B 27 427 371 HOH HOH . O 3 HOH B 28 428 59 HOH HOH . O 3 HOH B 29 429 272 HOH HOH . P 3 HOH C 1 401 23 HOH HOH . P 3 HOH C 2 402 51 HOH HOH . P 3 HOH C 3 403 307 HOH HOH . P 3 HOH C 4 404 115 HOH HOH . P 3 HOH C 5 405 204 HOH HOH . P 3 HOH C 6 406 258 HOH HOH . P 3 HOH C 7 407 114 HOH HOH . P 3 HOH C 8 408 192 HOH HOH . P 3 HOH C 9 409 31 HOH HOH . P 3 HOH C 10 410 5 HOH HOH . P 3 HOH C 11 411 189 HOH HOH . P 3 HOH C 12 412 74 HOH HOH . P 3 HOH C 13 413 298 HOH HOH . P 3 HOH C 14 414 244 HOH HOH . P 3 HOH C 15 415 191 HOH HOH . P 3 HOH C 16 416 9 HOH HOH . P 3 HOH C 17 417 93 HOH HOH . P 3 HOH C 18 418 113 HOH HOH . P 3 HOH C 19 419 353 HOH HOH . P 3 HOH C 20 420 142 HOH HOH . P 3 HOH C 21 421 130 HOH HOH . P 3 HOH C 22 422 269 HOH HOH . P 3 HOH C 23 423 233 HOH HOH . P 3 HOH C 24 424 139 HOH HOH . P 3 HOH C 25 425 193 HOH HOH . P 3 HOH C 26 426 160 HOH HOH . P 3 HOH C 27 427 146 HOH HOH . P 3 HOH C 28 428 70 HOH HOH . P 3 HOH C 29 429 69 HOH HOH . P 3 HOH C 30 430 261 HOH HOH . P 3 HOH C 31 431 185 HOH HOH . P 3 HOH C 32 432 217 HOH HOH . P 3 HOH C 33 433 222 HOH HOH . P 3 HOH C 34 434 92 HOH HOH . P 3 HOH C 35 435 351 HOH HOH . P 3 HOH C 36 436 209 HOH HOH . P 3 HOH C 37 437 352 HOH HOH . P 3 HOH C 38 438 359 HOH HOH . P 3 HOH C 39 439 187 HOH HOH . Q 3 HOH D 1 401 372 HOH HOH . Q 3 HOH D 2 402 336 HOH HOH . Q 3 HOH D 3 403 309 HOH HOH . Q 3 HOH D 4 404 123 HOH HOH . Q 3 HOH D 5 405 57 HOH HOH . Q 3 HOH D 6 406 132 HOH HOH . Q 3 HOH D 7 407 360 HOH HOH . Q 3 HOH D 8 408 109 HOH HOH . Q 3 HOH D 9 409 270 HOH HOH . Q 3 HOH D 10 410 102 HOH HOH . Q 3 HOH D 11 411 11 HOH HOH . Q 3 HOH D 12 412 126 HOH HOH . Q 3 HOH D 13 413 45 HOH HOH . Q 3 HOH D 14 414 103 HOH HOH . Q 3 HOH D 15 415 16 HOH HOH . Q 3 HOH D 16 416 361 HOH HOH . Q 3 HOH D 17 417 224 HOH HOH . Q 3 HOH D 18 418 343 HOH HOH . Q 3 HOH D 19 419 68 HOH HOH . Q 3 HOH D 20 420 79 HOH HOH . Q 3 HOH D 21 421 212 HOH HOH . Q 3 HOH D 22 422 179 HOH HOH . Q 3 HOH D 23 423 39 HOH HOH . Q 3 HOH D 24 424 149 HOH HOH . Q 3 HOH D 25 425 154 HOH HOH . Q 3 HOH D 26 426 147 HOH HOH . Q 3 HOH D 27 427 198 HOH HOH . Q 3 HOH D 28 428 60 HOH HOH . Q 3 HOH D 29 429 347 HOH HOH . Q 3 HOH D 30 430 125 HOH HOH . Q 3 HOH D 31 431 112 HOH HOH . Q 3 HOH D 32 432 348 HOH HOH . Q 3 HOH D 33 433 297 HOH HOH . Q 3 HOH D 34 434 100 HOH HOH . Q 3 HOH D 35 435 210 HOH HOH . Q 3 HOH D 36 436 240 HOH HOH . Q 3 HOH D 37 437 214 HOH HOH . Q 3 HOH D 38 438 289 HOH HOH . Q 3 HOH D 39 439 275 HOH HOH . Q 3 HOH D 40 440 172 HOH HOH . Q 3 HOH D 41 441 310 HOH HOH . Q 3 HOH D 42 442 87 HOH HOH . Q 3 HOH D 43 443 337 HOH HOH . Q 3 HOH D 44 444 338 HOH HOH . Q 3 HOH D 45 445 358 HOH HOH . Q 3 HOH D 46 446 119 HOH HOH . Q 3 HOH D 47 447 293 HOH HOH . R 3 HOH E 1 401 329 HOH HOH . R 3 HOH E 2 402 366 HOH HOH . R 3 HOH E 3 403 324 HOH HOH . R 3 HOH E 4 404 178 HOH HOH . R 3 HOH E 5 405 6 HOH HOH . R 3 HOH E 6 406 91 HOH HOH . R 3 HOH E 7 407 37 HOH HOH . R 3 HOH E 8 408 21 HOH HOH . R 3 HOH E 9 409 140 HOH HOH . R 3 HOH E 10 410 277 HOH HOH . R 3 HOH E 11 411 161 HOH HOH . R 3 HOH E 12 412 15 HOH HOH . R 3 HOH E 13 413 75 HOH HOH . R 3 HOH E 14 414 81 HOH HOH . R 3 HOH E 15 415 182 HOH HOH . R 3 HOH E 16 416 267 HOH HOH . R 3 HOH E 17 417 80 HOH HOH . R 3 HOH E 18 418 328 HOH HOH . R 3 HOH E 19 419 127 HOH HOH . R 3 HOH E 20 420 260 HOH HOH . R 3 HOH E 21 421 133 HOH HOH . R 3 HOH E 22 422 153 HOH HOH . R 3 HOH E 23 423 163 HOH HOH . R 3 HOH E 24 424 263 HOH HOH . R 3 HOH E 25 425 29 HOH HOH . R 3 HOH E 26 426 238 HOH HOH . R 3 HOH E 27 427 107 HOH HOH . R 3 HOH E 28 428 61 HOH HOH . R 3 HOH E 29 429 170 HOH HOH . R 3 HOH E 30 430 86 HOH HOH . R 3 HOH E 31 431 34 HOH HOH . R 3 HOH E 32 432 65 HOH HOH . R 3 HOH E 33 433 117 HOH HOH . R 3 HOH E 34 434 56 HOH HOH . R 3 HOH E 35 435 32 HOH HOH . R 3 HOH E 36 436 54 HOH HOH . R 3 HOH E 37 437 128 HOH HOH . R 3 HOH E 38 438 181 HOH HOH . R 3 HOH E 39 439 88 HOH HOH . R 3 HOH E 40 440 225 HOH HOH . R 3 HOH E 41 441 171 HOH HOH . R 3 HOH E 42 442 10 HOH HOH . R 3 HOH E 43 443 230 HOH HOH . R 3 HOH E 44 444 176 HOH HOH . R 3 HOH E 45 445 156 HOH HOH . R 3 HOH E 46 446 129 HOH HOH . R 3 HOH E 47 447 231 HOH HOH . R 3 HOH E 48 448 252 HOH HOH . R 3 HOH E 49 449 186 HOH HOH . R 3 HOH E 50 450 299 HOH HOH . R 3 HOH E 51 451 321 HOH HOH . R 3 HOH E 52 452 291 HOH HOH . R 3 HOH E 53 453 221 HOH HOH . R 3 HOH E 54 454 273 HOH HOH . R 3 HOH E 55 455 285 HOH HOH . R 3 HOH E 56 456 242 HOH HOH . R 3 HOH E 57 457 315 HOH HOH . R 3 HOH E 58 458 188 HOH HOH . R 3 HOH E 59 459 145 HOH HOH . R 3 HOH E 60 460 280 HOH HOH . R 3 HOH E 61 461 340 HOH HOH . R 3 HOH E 62 462 368 HOH HOH . R 3 HOH E 63 463 202 HOH HOH . R 3 HOH E 64 464 304 HOH HOH . R 3 HOH E 65 465 283 HOH HOH . R 3 HOH E 66 466 362 HOH HOH . R 3 HOH E 67 467 226 HOH HOH . S 3 HOH F 1 301 17 HOH HOH . S 3 HOH F 2 302 137 HOH HOH . S 3 HOH F 3 303 369 HOH HOH . S 3 HOH F 4 304 42 HOH HOH . S 3 HOH F 5 305 2 HOH HOH . S 3 HOH F 6 306 124 HOH HOH . S 3 HOH F 7 307 138 HOH HOH . S 3 HOH F 8 308 194 HOH HOH . S 3 HOH F 9 309 268 HOH HOH . S 3 HOH F 10 310 78 HOH HOH . S 3 HOH F 11 311 22 HOH HOH . S 3 HOH F 12 312 20 HOH HOH . S 3 HOH F 13 313 122 HOH HOH . S 3 HOH F 14 314 306 HOH HOH . S 3 HOH F 15 315 157 HOH HOH . S 3 HOH F 16 316 53 HOH HOH . S 3 HOH F 17 317 108 HOH HOH . S 3 HOH F 18 318 12 HOH HOH . S 3 HOH F 19 319 288 HOH HOH . S 3 HOH F 20 320 200 HOH HOH . S 3 HOH F 21 321 162 HOH HOH . S 3 HOH F 22 322 18 HOH HOH . S 3 HOH F 23 323 134 HOH HOH . S 3 HOH F 24 324 144 HOH HOH . S 3 HOH F 25 325 97 HOH HOH . S 3 HOH F 26 326 96 HOH HOH . S 3 HOH F 27 327 101 HOH HOH . S 3 HOH F 28 328 249 HOH HOH . S 3 HOH F 29 329 47 HOH HOH . S 3 HOH F 30 330 40 HOH HOH . S 3 HOH F 31 331 35 HOH HOH . S 3 HOH F 32 332 239 HOH HOH . S 3 HOH F 33 333 46 HOH HOH . S 3 HOH F 34 334 246 HOH HOH . S 3 HOH F 35 335 36 HOH HOH . S 3 HOH F 36 336 90 HOH HOH . S 3 HOH F 37 337 1 HOH HOH . S 3 HOH F 38 338 295 HOH HOH . S 3 HOH F 39 339 183 HOH HOH . S 3 HOH F 40 340 152 HOH HOH . S 3 HOH F 41 341 301 HOH HOH . S 3 HOH F 42 342 99 HOH HOH . S 3 HOH F 43 343 227 HOH HOH . S 3 HOH F 44 344 264 HOH HOH . S 3 HOH F 45 345 50 HOH HOH . S 3 HOH F 46 346 248 HOH HOH . S 3 HOH F 47 347 294 HOH HOH . S 3 HOH F 48 348 339 HOH HOH . S 3 HOH F 49 349 199 HOH HOH . S 3 HOH F 50 350 111 HOH HOH . S 3 HOH F 51 351 155 HOH HOH . S 3 HOH F 52 352 190 HOH HOH . S 3 HOH F 53 353 197 HOH HOH . S 3 HOH F 54 354 367 HOH HOH . S 3 HOH F 55 355 235 HOH HOH . S 3 HOH F 56 356 66 HOH HOH . S 3 HOH F 57 357 166 HOH HOH . S 3 HOH F 58 358 84 HOH HOH . S 3 HOH F 59 359 325 HOH HOH . S 3 HOH F 60 360 370 HOH HOH . S 3 HOH F 61 361 334 HOH HOH . S 3 HOH F 62 362 305 HOH HOH . S 3 HOH F 63 363 355 HOH HOH . S 3 HOH F 64 364 136 HOH HOH . S 3 HOH F 65 365 357 HOH HOH . S 3 HOH F 66 366 356 HOH HOH . S 3 HOH F 67 367 141 HOH HOH . S 3 HOH F 68 368 354 HOH HOH . S 3 HOH F 69 369 322 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . J 2 30.7 2.91 31.644 1 48.43 ? C1 GOL 301 D 1 HETATM 2 O O1 GOL . . . J 2 30.266 3.001 33 1 51.9 ? O1 GOL 301 D 1 HETATM 3 C C2 GOL . . . J 2 32.001 3.753 31.483 1 39.56 ? C2 GOL 301 D 1 HETATM 4 O O2 GOL . . . J 2 32.682 3.853 32.708 1 43.87 ? O2 GOL 301 D 1 HETATM 5 C C3 GOL . . . J 2 31.494 5.155 30.897 1 48.15 ? C3 GOL 301 D 1 HETATM 6 O O3 GOL . . . J 2 32.588 6.043 30.867 1 48.47 ? O3 GOL 301 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #