data_6TJV
#
_model_server_result.job_id            e8mE9QWp8nXC6CxF7u0V6g 
_model_server_result.datetime_utc      '2025-03-06 09:45:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tjv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":201}' 
#
_entry.id    6TJV 
#
_exptl.entry_id    6TJV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              751.023 
_entity.id                          20 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TJV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 20 T N N 
? 20 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CG1 VAL 43 A VAL 43 1_555 EA CIA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.188 ? 
covale ? covale2 L CG PRO 56 L PRO 56 1_555 EA CFA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
#
_chem_comp.formula           'C40 H79 O10 P' 
_chem_comp.formula_weight    751.023 
_chem_comp.id                PGT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'PHOSPHATIDYLGLYCEROL;1-PALMITOYL-2-OLEOYL-SN-GLYCERO-3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT)' 
#
_atom_sites.entry_id                     6TJV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 DGD A 1 501 501 DGD DGD . 
T 20 PGT C 1 201 201 PGT PGT . 
U 21 SQD D 1 601 501 SQD SQD . 
V 20 PGT D 1 602 1001 PGT PGT . 
W 21 SQD F 1 701 701 SQD SQD . 
X 22 BCR F 1 702 801 BCR BCR . 
Y 21 SQD F 1 703 901 SQD SQD . 
Z 23 CLA F 1 704 1101 CLA CLA . 
AA 24 SF4 I 1 201 201 SF4 SF4 . 
BA 24 SF4 I 1 202 202 SF4 SF4 . 
CA 24 SF4 K 1 501 501 SF4 SF4 . 
DA 21 SQD K 1 502 701 SQD SQD . 
EA 19 DGD L 1 401 401 DGD DGD . 
FA 21 SQD L 1 402 601 SQD SQD . 
GA 25 ZN P 1 501 1 ZN ZN . 
HA 26 HOH P 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C48 PGT . . . T 20 201.427 198.32 144.302 1 61.08 ? C48 PGT 201 C 1 
HETATM 2 C C47 PGT . . . T 20 201.258 199.808 144.265 1 61.08 ? C47 PGT 201 C 1 
HETATM 3 C C46 PGT . . . T 20 202.615 200.44 144.474 1 61.08 ? C46 PGT 201 C 1 
HETATM 4 C C45 PGT . . . T 20 203.312 199.914 145.715 1 61.08 ? C45 PGT 201 C 1 
HETATM 5 C C44 PGT . . . T 20 204.704 200.506 145.833 1 61.08 ? C44 PGT 201 C 1 
HETATM 6 C C43 PGT . . . T 20 204.769 201.943 145.328 1 61.08 ? C43 PGT 201 C 1 
HETATM 7 C C42 PGT . . . T 20 206.12 202.576 145.634 1 61.08 ? C42 PGT 201 C 1 
HETATM 8 C C41 PGT . . . T 20 206.954 202.822 144.407 1 61.08 ? C41 PGT 201 C 1 
HETATM 9 C C40 PGT . . . T 20 208.152 201.948 144.416 1 61.08 ? C40 PGT 201 C 1 
HETATM 10 C C39 PGT . . . T 20 209.338 202.743 144.811 1 61.08 ? C39 PGT 201 C 1 
HETATM 11 C C38 PGT . . . T 20 210.397 202.544 143.789 1 61.08 ? C38 PGT 201 C 1 
HETATM 12 C C37 PGT . . . T 20 211.731 202.844 144.379 1 61.08 ? C37 PGT 201 C 1 
HETATM 13 C C36 PGT . . . T 20 212.794 203.865 144.117 1 61.08 ? C36 PGT 201 C 1 
HETATM 14 C C35 PGT . . . T 20 213.221 203.854 142.699 1 61.08 ? C35 PGT 201 C 1 
HETATM 15 C C34 PGT . . . T 20 214.711 204.028 142.606 1 61.08 ? C34 PGT 201 C 1 
HETATM 16 C C33 PGT . . . T 20 215.104 205.13 141.646 1 61.08 ? C33 PGT 201 C 1 
HETATM 17 C C32 PGT . . . T 20 216.611 205.214 141.389 1 61.08 ? C32 PGT 201 C 1 
HETATM 18 C C31 PGT . . . T 20 217.164 203.925 140.905 1 61.08 ? C31 PGT 201 C 1 
HETATM 19 O O31 PGT . . . T 20 216.44 203.033 140.805 1 61.08 ? O31 PGT 201 C 1 
HETATM 20 O O2 PGT . . . T 20 218.508 203.618 140.545 1 61.08 ? O2 PGT 201 C 1 
HETATM 21 C C2 PGT . . . T 20 218.561 203.077 139.243 1 61.08 ? C2 PGT 201 C 1 
HETATM 22 C C1 PGT . . . T 20 219.643 202.014 139.21 1 61.08 ? C1 PGT 201 C 1 
HETATM 23 O O3P PGT . . . T 20 219.958 201.513 137.922 1 61.08 ? O3P PGT 201 C 1 
HETATM 24 P P PGT . . . T 20 219.968 199.96 137.523 1 61.08 ? P PGT 201 C 1 
HETATM 25 O O1P PGT . . . T 20 218.673 199.316 137.834 1 61.08 ? O1P PGT 201 C 1 
HETATM 26 O O2P PGT . . . T 20 220.515 199.815 136.154 1 61.08 ? O2P PGT 201 C 1 
HETATM 27 O O4P PGT . . . T 20 221.123 199.299 138.317 1 61.08 ? O4P PGT 201 C 1 
HETATM 28 C C4 PGT . . . T 20 222.449 199.529 137.908 1 61.08 ? C4 PGT 201 C 1 
HETATM 29 C C5 PGT . . . T 20 222.599 200.989 137.574 1 61.08 ? C5 PGT 201 C 1 
HETATM 30 O O5 PGT . . . T 20 222.126 201.156 136.248 1 61.08 ? O5 PGT 201 C 1 
HETATM 31 C C6 PGT . . . T 20 224.064 201.395 137.651 1 61.08 ? C6 PGT 201 C 1 
HETATM 32 O O6 PGT . . . T 20 224.812 200.521 138.499 1 61.08 ? O6 PGT 201 C 1 
HETATM 33 C C3 PGT . . . T 20 218.759 204.264 138.345 1 61.08 ? C3 PGT 201 C 1 
HETATM 34 O O3 PGT . . . T 20 217.814 205.289 138.672 1 61.08 ? O3 PGT 201 C 1 
HETATM 35 C C11 PGT . . . T 20 217.255 206.138 137.673 1 61.08 ? C11 PGT 201 C 1 
HETATM 36 O O11 PGT . . . T 20 217.965 206.545 136.79 1 61.08 ? O11 PGT 201 C 1 
HETATM 37 C C12 PGT . . . T 20 215.799 206.447 137.734 1 61.08 ? C12 PGT 201 C 1 
HETATM 38 C C13 PGT . . . T 20 215.526 207.895 137.974 1 61.08 ? C13 PGT 201 C 1 
HETATM 39 C C14 PGT . . . T 20 214.356 208.24 137.101 1 61.08 ? C14 PGT 201 C 1 
HETATM 40 C C15 PGT . . . T 20 213.047 207.683 137.609 1 61.08 ? C15 PGT 201 C 1 
HETATM 41 C C16 PGT . . . T 20 212.049 208.813 137.67 1 61.08 ? C16 PGT 201 C 1 
HETATM 42 C C17 PGT . . . T 20 210.644 208.366 137.38 1 61.08 ? C17 PGT 201 C 1 
HETATM 43 C C18 PGT . . . T 20 210.393 208.481 135.902 1 61.08 ? C18 PGT 201 C 1 
HETATM 44 C C19 PGT . . . T 20 209.149 209.29 135.605 1 61.08 ? C19 PGT 201 C 1 
HETATM 45 C C20 PGT . . . T 20 208.576 208.976 134.23 1 61.08 ? C20 PGT 201 C 1 
HETATM 46 C C21 PGT . . . T 20 209.548 209.367 133.14 1 61.08 ? C21 PGT 201 C 1 
HETATM 47 C C22 PGT . . . T 20 209.511 210.869 132.835 1 61.08 ? C22 PGT 201 C 1 
HETATM 48 C C23 PGT . . . T 20 210.675 211.341 131.965 1 61.08 ? C23 PGT 201 C 1 
HETATM 49 C C24 PGT . . . T 20 210.466 212.744 131.406 1 61.08 ? C24 PGT 201 C 1 
HETATM 50 C C25 PGT . . . T 20 210.741 213.806 132.465 1 61.08 ? C25 PGT 201 C 1 
HETATM 51 C C26 PGT . . . T 20 211.235 215.103 131.862 1 61.08 ? C26 PGT 201 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           51 
#