data_6TJV
#
_model_server_result.job_id            20fhzZGBFBCrhZCyEVqVrQ 
_model_server_result.datetime_utc      '2025-03-06 09:11:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tjv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"EA","auth_seq_id":401}' 
#
_entry.id    6TJV 
#
_exptl.entry_id    6TJV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              949.299 
_entity.id                          19 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIGALACTOSYL DIACYL GLYCEROL (DGDG)' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TJV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 19 S N N 
? 19 EA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CG1 VAL 43 A VAL 43 1_555 EA CIA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.188 ? 
covale ? covale2 L CG PRO 56 L PRO 56 1_555 EA CFA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
#
_chem_comp.formula           'C51 H96 O15' 
_chem_comp.formula_weight    949.299 
_chem_comp.id                DGD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIGALACTOSYL DIACYL GLYCEROL (DGDG)' 
_chem_comp.type              saccharide 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6TJV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 DGD A 1 501 501 DGD DGD . 
T 20 PGT C 1 201 201 PGT PGT . 
U 21 SQD D 1 601 501 SQD SQD . 
V 20 PGT D 1 602 1001 PGT PGT . 
W 21 SQD F 1 701 701 SQD SQD . 
X 22 BCR F 1 702 801 BCR BCR . 
Y 21 SQD F 1 703 901 SQD SQD . 
Z 23 CLA F 1 704 1101 CLA CLA . 
AA 24 SF4 I 1 201 201 SF4 SF4 . 
BA 24 SF4 I 1 202 202 SF4 SF4 . 
CA 24 SF4 K 1 501 501 SF4 SF4 . 
DA 21 SQD K 1 502 701 SQD SQD . 
EA 19 DGD L 1 401 401 DGD DGD . 
FA 21 SQD L 1 402 601 SQD SQD . 
GA 25 ZN P 1 501 1 ZN ZN . 
HA 26 HOH P 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1A DGD . . . EA 19 212.221 193.908 115.533 1 71.42 ? C1A DGD 401 L 1 
HETATM 2 C C2A DGD . . . EA 19 211.603 195.018 114.718 1 71.42 ? C2A DGD 401 L 1 
HETATM 3 C C3A DGD . . . EA 19 210.907 194.433 113.495 1 71.42 ? C3A DGD 401 L 1 
HETATM 4 C C4A DGD . . . EA 19 209.416 194.751 113.51 1 71.42 ? C4A DGD 401 L 1 
HETATM 5 C C5A DGD . . . EA 19 209.131 196.063 112.789 1 71.42 ? C5A DGD 401 L 1 
HETATM 6 C C6A DGD . . . EA 19 208.543 197.094 113.745 1 71.42 ? C6A DGD 401 L 1 
HETATM 7 C C7A DGD . . . EA 19 207.38 197.835 113.098 1 71.42 ? C7A DGD 401 L 1 
HETATM 8 C C8A DGD . . . EA 19 206.095 197.627 113.888 1 71.42 ? C8A DGD 401 L 1 
HETATM 9 C C9A DGD . . . EA 19 205.745 198.873 114.692 1 71.42 ? C9A DGD 401 L 1 
HETATM 10 C CAA DGD . . . EA 19 204.335 198.778 115.262 1 71.42 ? CAA DGD 401 L 1 
HETATM 11 C CBA DGD . . . EA 19 204.363 198.777 116.786 1 71.42 ? CBA DGD 401 L 1 
HETATM 12 C CCA DGD . . . EA 19 202.958 198.629 117.357 1 71.42 ? CCA DGD 401 L 1 
HETATM 13 C CDA DGD . . . EA 19 202.675 197.178 117.726 1 71.42 ? CDA DGD 401 L 1 
HETATM 14 C CEA DGD . . . EA 19 201.812 196.505 116.666 1 71.42 ? CEA DGD 401 L 1 
HETATM 15 C CFA DGD . . . EA 19 200.37 196.381 117.141 1 71.42 ? CFA DGD 401 L 1 
HETATM 16 C CGA DGD . . . EA 19 199.956 194.919 117.26 1 71.42 ? CGA DGD 401 L 1 
HETATM 17 C CHA DGD . . . EA 19 198.978 194.726 118.411 1 71.42 ? CHA DGD 401 L 1 
HETATM 18 C CIA DGD . . . EA 19 197.957 195.842 118.443 1 71.42 ? CIA DGD 401 L 1 
HETATM 19 O O1A DGD . . . EA 19 211.768 192.776 115.489 1 71.42 ? O1A DGD 401 L 1 
HETATM 20 C C1B DGD . . . EA 19 213.431 195.549 118.812 1 71.42 ? C1B DGD 401 L 1 
HETATM 21 C C2B DGD . . . EA 19 211.925 195.489 118.71 1 71.42 ? C2B DGD 401 L 1 
HETATM 22 C C3B DGD . . . EA 19 211.31 196.66 119.467 1 71.42 ? C3B DGD 401 L 1 
HETATM 23 C C4B DGD . . . EA 19 210.046 197.154 118.775 1 71.42 ? C4B DGD 401 L 1 
HETATM 24 C C5B DGD . . . EA 19 208.857 196.26 119.107 1 71.42 ? C5B DGD 401 L 1 
HETATM 25 C C6B DGD . . . EA 19 207.87 196.209 117.947 1 71.42 ? C6B DGD 401 L 1 
HETATM 26 C C7B DGD . . . EA 19 207.702 194.783 117.436 1 71.42 ? C7B DGD 401 L 1 
HETATM 27 C C8B DGD . . . EA 19 206.415 194.639 116.633 1 71.42 ? C8B DGD 401 L 1 
HETATM 28 C C9B DGD . . . EA 19 206.217 193.2 116.172 1 71.42 ? C9B DGD 401 L 1 
HETATM 29 C CAB DGD . . . EA 19 206.473 193.065 114.675 1 71.42 ? CAB DGD 401 L 1 
HETATM 30 C CBB DGD . . . EA 19 206.632 191.603 114.278 1 71.42 ? CBB DGD 401 L 1 
HETATM 31 C CCB DGD . . . EA 19 206.68 191.451 112.762 1 71.42 ? CCB DGD 401 L 1 
HETATM 32 C CDB DGD . . . EA 19 206.5 189.994 112.353 1 71.42 ? CDB DGD 401 L 1 
HETATM 33 C CEB DGD . . . EA 19 206.798 189.802 110.871 1 71.42 ? CEB DGD 401 L 1 
HETATM 34 C CFB DGD . . . EA 19 206.471 191.063 110.08 1 71.42 ? CFB DGD 401 L 1 
HETATM 35 C CGB DGD . . . EA 19 206.266 190.745 108.604 1 71.42 ? CGB DGD 401 L 1 
HETATM 36 C CHB DGD . . . EA 19 205.114 189.765 108.411 1 71.42 ? CHB DGD 401 L 1 
HETATM 37 C CIB DGD . . . EA 19 205.629 188.364 108.168 1 71.42 ? CIB DGD 401 L 1 
HETATM 38 O O1B DGD . . . EA 19 214.035 196.565 118.508 1 71.42 ? O1B DGD 401 L 1 
HETATM 39 O O1G DGD . . . EA 19 213.37 194.178 116.382 1 71.42 ? O1G DGD 401 L 1 
HETATM 40 C C1G DGD . . . EA 19 213.894 193.153 117.224 1 71.42 ? C1G DGD 401 L 1 
HETATM 41 C C2G DGD . . . EA 19 214.885 193.756 118.212 1 71.42 ? C2G DGD 401 L 1 
HETATM 42 O O2G DGD . . . EA 19 214.178 194.392 119.276 1 71.42 ? O2G DGD 401 L 1 
HETATM 43 C C3G DGD . . . EA 19 215.787 192.663 118.775 1 71.42 ? C3G DGD 401 L 1 
HETATM 44 O O3G DGD . . . EA 19 216.389 193.116 119.986 1 71.42 ? O3G DGD 401 L 1 
HETATM 45 C C1D DGD . . . EA 19 217.658 192.504 120.213 1 71.42 ? C1D DGD 401 L 1 
HETATM 46 C C2D DGD . . . EA 19 218.102 192.776 121.646 1 71.42 ? C2D DGD 401 L 1 
HETATM 47 O O2D DGD . . . EA 19 218.293 194.183 121.829 1 71.42 ? O2D DGD 401 L 1 
HETATM 48 C C3D DGD . . . EA 19 219.397 192.04 121.971 1 71.42 ? C3D DGD 401 L 1 
HETATM 49 O O3D DGD . . . EA 19 219.661 192.13 123.375 1 71.42 ? O3D DGD 401 L 1 
HETATM 50 C C4D DGD . . . EA 19 219.31 190.575 121.559 1 71.42 ? C4D DGD 401 L 1 
HETATM 51 O O4D DGD . . . EA 19 218.416 189.882 122.438 1 71.42 ? O4D DGD 401 L 1 
HETATM 52 C C5D DGD . . . EA 19 218.821 190.444 120.121 1 71.42 ? C5D DGD 401 L 1 
HETATM 53 O O5D DGD . . . EA 19 217.402 188.487 119.686 1 71.42 ? O5D DGD 401 L 1 
HETATM 54 C C6D DGD . . . EA 19 218.745 188.972 119.709 1 71.42 ? C6D DGD 401 L 1 
HETATM 55 O O6D DGD . . . EA 19 217.557 191.098 119.995 1 71.42 ? O6D DGD 401 L 1 
HETATM 56 C C1E DGD . . . EA 19 217.056 187.798 120.888 1 71.42 ? C1E DGD 401 L 1 
HETATM 57 C C2E DGD . . . EA 19 217.578 186.362 120.855 1 71.42 ? C2E DGD 401 L 1 
HETATM 58 O O2E DGD . . . EA 19 218.781 186.274 120.08 1 71.42 ? O2E DGD 401 L 1 
HETATM 59 C C3E DGD . . . EA 19 216.527 185.424 120.276 1 71.42 ? C3E DGD 401 L 1 
HETATM 60 O O3E DGD . . . EA 19 217.072 184.104 120.148 1 71.42 ? O3E DGD 401 L 1 
HETATM 61 C C4E DGD . . . EA 19 215.291 185.417 121.169 1 71.42 ? C4E DGD 401 L 1 
HETATM 62 O O4E DGD . . . EA 19 215.381 184.379 122.153 1 71.42 ? O4E DGD 401 L 1 
HETATM 63 C C5E DGD . . . EA 19 215.143 186.764 121.871 1 71.42 ? C5E DGD 401 L 1 
HETATM 64 O O6E DGD . . . EA 19 215.633 187.799 121.018 1 71.42 ? O6E DGD 401 L 1 
HETATM 65 C C6E DGD . . . EA 19 215.885 186.808 123.205 1 71.42 ? C6E DGD 401 L 1 
HETATM 66 O O5E DGD . . . EA 19 216.762 185.683 123.342 1 71.42 ? O5E DGD 401 L 1 
#
_model_server_stats.io_time_ms              43 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    45 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           66 
#