data_6TJV
#
_model_server_result.job_id            4PjeUwgBDMdYwWoPi9EnMQ 
_model_server_result.datetime_utc      '2025-03-06 09:03:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tjv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":601}' 
#
_entry.id    6TJV 
#
_exptl.entry_id    6TJV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              795.116 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TJV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 21 U N N 
? 21 W N N 
? 21 Y N N 
? 21 DA N N 
? 21 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CG1 VAL 43 A VAL 43 1_555 EA CIA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.188 ? 
covale ? covale2 L CG PRO 56 L PRO 56 1_555 EA CFA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
#
_chem_comp.formula           'C41 H78 O12 S' 
_chem_comp.formula_weight    795.116 
_chem_comp.id                SQD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SULFOQUINOVOSYLDIACYLGLYCEROL 
#
_atom_sites.entry_id                     6TJV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 DGD A 1 501 501 DGD DGD . 
T 20 PGT C 1 201 201 PGT PGT . 
U 21 SQD D 1 601 501 SQD SQD . 
V 20 PGT D 1 602 1001 PGT PGT . 
W 21 SQD F 1 701 701 SQD SQD . 
X 22 BCR F 1 702 801 BCR BCR . 
Y 21 SQD F 1 703 901 SQD SQD . 
Z 23 CLA F 1 704 1101 CLA CLA . 
AA 24 SF4 I 1 201 201 SF4 SF4 . 
BA 24 SF4 I 1 202 202 SF4 SF4 . 
CA 24 SF4 K 1 501 501 SF4 SF4 . 
DA 21 SQD K 1 502 701 SQD SQD . 
EA 19 DGD L 1 401 401 DGD DGD . 
FA 21 SQD L 1 402 601 SQD SQD . 
GA 25 ZN P 1 501 1 ZN ZN . 
HA 26 HOH P 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 SQD . . . U 21 172.898 173.898 246.693 1 58.15 ? O6 SQD 601 D 1 
HETATM 2 C C44 SQD . . . U 21 174.204 173.775 247.084 1 58.15 ? C44 SQD 601 D 1 
HETATM 3 C C45 SQD . . . U 21 174.532 172.372 247.406 1 58.15 ? C45 SQD 601 D 1 
HETATM 4 C C46 SQD . . . U 21 175.388 171.72 246.383 1 58.15 ? C46 SQD 601 D 1 
HETATM 5 O O47 SQD . . . U 21 175.195 172.432 248.611 1 58.15 ? O47 SQD 601 D 1 
HETATM 6 C C7 SQD . . . U 21 176.316 173.228 248.547 1 58.15 ? C7 SQD 601 D 1 
HETATM 7 O O49 SQD . . . U 21 177.239 172.849 247.938 1 58.15 ? O49 SQD 601 D 1 
HETATM 8 C C8 SQD . . . U 21 176.279 174.479 249.293 1 58.15 ? C8 SQD 601 D 1 
HETATM 9 C C9 SQD . . . U 21 177.193 174.156 250.385 1 58.15 ? C9 SQD 601 D 1 
HETATM 10 C C10 SQD . . . U 21 178.581 174.149 249.88 1 58.15 ? C10 SQD 601 D 1 
HETATM 11 C C11 SQD . . . U 21 178.901 175.586 249.751 1 58.15 ? C11 SQD 601 D 1 
HETATM 12 C C12 SQD . . . U 21 179.207 176.077 251.128 1 58.15 ? C12 SQD 601 D 1 
HETATM 13 C C13 SQD . . . U 21 179.429 177.558 251.02 1 58.15 ? C13 SQD 601 D 1 
HETATM 14 C C14 SQD . . . U 21 179.002 178.215 252.286 1 58.15 ? C14 SQD 601 D 1 
HETATM 15 C C15 SQD . . . U 21 180.235 178.713 252.954 1 58.15 ? C15 SQD 601 D 1 
HETATM 16 C C16 SQD . . . U 21 180.879 179.786 252.131 1 58.15 ? C16 SQD 601 D 1 
HETATM 17 C C17 SQD . . . U 21 181.957 180.483 252.917 1 58.15 ? C17 SQD 601 D 1 
HETATM 18 C C18 SQD . . . U 21 182.861 179.55 253.713 1 58.15 ? C18 SQD 601 D 1 
HETATM 19 C C19 SQD . . . U 21 183.242 180.262 254.981 1 58.15 ? C19 SQD 601 D 1 
HETATM 20 C C20 SQD . . . U 21 183.947 179.324 255.909 1 58.15 ? C20 SQD 601 D 1 
HETATM 21 C C21 SQD . . . U 21 185.421 179.523 255.823 1 58.15 ? C21 SQD 601 D 1 
HETATM 22 C C22 SQD . . . U 21 185.812 179.647 254.393 1 58.15 ? C22 SQD 601 D 1 
HETATM 23 O O48 SQD . . . U 21 175.639 170.469 246.914 1 58.15 ? O48 SQD 601 D 1 
HETATM 24 C C23 SQD . . . U 21 176.99 170.026 246.989 1 58.15 ? C23 SQD 601 D 1 
HETATM 25 O O10 SQD . . . U 21 177.282 169.16 247.777 1 58.15 ? O10 SQD 601 D 1 
HETATM 26 C C24 SQD . . . U 21 178.039 170.601 246.104 1 58.15 ? C24 SQD 601 D 1 
HETATM 27 C C25 SQD . . . U 21 179.246 170.918 246.934 1 58.15 ? C25 SQD 601 D 1 
HETATM 28 C C26 SQD . . . U 21 179.904 169.657 247.347 1 58.15 ? C26 SQD 601 D 1 
HETATM 29 C C27 SQD . . . U 21 181.366 169.898 247.233 1 58.15 ? C27 SQD 601 D 1 
HETATM 30 C C28 SQD . . . U 21 181.853 170.544 248.492 1 58.15 ? C28 SQD 601 D 1 
HETATM 31 C C29 SQD . . . U 21 181.45 171.974 248.389 1 58.15 ? C29 SQD 601 D 1 
HETATM 32 C C30 SQD . . . U 21 182.491 172.872 248.997 1 58.15 ? C30 SQD 601 D 1 
HETATM 33 C C31 SQD . . . U 21 182.043 174.314 249.005 1 58.15 ? C31 SQD 601 D 1 
HETATM 34 C C32 SQD . . . U 21 183.13 175.226 248.507 1 58.15 ? C32 SQD 601 D 1 
HETATM 35 C C33 SQD . . . U 21 184.155 175.404 249.593 1 58.15 ? C33 SQD 601 D 1 
HETATM 36 C C34 SQD . . . U 21 183.837 176.68 250.31 1 58.15 ? C34 SQD 601 D 1 
HETATM 37 C C35 SQD . . . U 21 185.118 177.419 250.61 1 58.15 ? C35 SQD 601 D 1 
HETATM 38 C C36 SQD . . . U 21 184.979 178.864 250.159 1 58.15 ? C36 SQD 601 D 1 
HETATM 39 C C37 SQD . . . U 21 185.227 179.836 251.288 1 58.15 ? C37 SQD 601 D 1 
HETATM 40 C C38 SQD . . . U 21 184.656 181.182 250.991 1 58.15 ? C38 SQD 601 D 1 
HETATM 41 C C1 SQD . . . U 21 172.858 173.314 245.47 1 58.15 ? C1 SQD 601 D 1 
HETATM 42 C C2 SQD . . . U 21 171.436 173.182 245.24 1 58.15 ? C2 SQD 601 D 1 
HETATM 43 O O2 SQD . . . U 21 171.071 172.145 246.033 1 58.15 ? O2 SQD 601 D 1 
HETATM 44 C C3 SQD . . . U 21 171.253 172.892 243.828 1 58.15 ? C3 SQD 601 D 1 
HETATM 45 O O3 SQD . . . U 21 171.132 174.251 243.76 1 58.15 ? O3 SQD 601 D 1 
HETATM 46 C C4 SQD . . . U 21 172.44 172.718 242.955 1 58.15 ? C4 SQD 601 D 1 
HETATM 47 O O4 SQD . . . U 21 172.769 171.364 243.111 1 58.15 ? O4 SQD 601 D 1 
HETATM 48 C C5 SQD . . . U 21 173.627 173.552 243.406 1 58.15 ? C5 SQD 601 D 1 
HETATM 49 C C6 SQD . . . U 21 173.986 174.705 242.583 1 58.15 ? C6 SQD 601 D 1 
HETATM 50 O O5 SQD . . . U 21 173.372 174.223 244.574 1 58.15 ? O5 SQD 601 D 1 
HETATM 51 S S SQD . . . U 21 175.475 175.038 243.099 1 58.15 ? S SQD 601 D 1 
HETATM 52 O O7 SQD . . . U 21 176.231 173.928 243.282 1 58.15 ? O7 SQD 601 D 1 
HETATM 53 O O8 SQD . . . U 21 176.41 175.738 242.095 1 58.15 ? O8 SQD 601 D 1 
HETATM 54 O O9 SQD . . . U 21 175.506 175.599 244.313 1 58.15 ? O9 SQD 601 D 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    55 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           54 
#