data_6TJV
#
_model_server_result.job_id            iT8YVg8waBCdFbx8nZ2X9A 
_model_server_result.datetime_utc      '2025-03-06 09:47:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tjv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":701}' 
#
_entry.id    6TJV 
#
_exptl.entry_id    6TJV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              795.116 
_entity.id                          21 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TJV 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TJV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octadecameric 
_pdbx_struct_assembly.oligomeric_count      18 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 21 U N N 
? 21 W N N 
? 21 Y N N 
? 21 DA N N 
? 21 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A CG1 VAL 43 A VAL 43 1_555 EA CIA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.188 ? 
covale ? covale2 L CG PRO 56 L PRO 56 1_555 EA CFA DGD . L DGD 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.616 ? 
#
_chem_comp.formula           'C41 H78 O12 S' 
_chem_comp.formula_weight    795.116 
_chem_comp.id                SQD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     SULFOQUINOVOSYLDIACYLGLYCEROL 
#
_atom_sites.entry_id                     6TJV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
S 19 DGD A 1 501 501 DGD DGD . 
T 20 PGT C 1 201 201 PGT PGT . 
U 21 SQD D 1 601 501 SQD SQD . 
V 20 PGT D 1 602 1001 PGT PGT . 
W 21 SQD F 1 701 701 SQD SQD . 
X 22 BCR F 1 702 801 BCR BCR . 
Y 21 SQD F 1 703 901 SQD SQD . 
Z 23 CLA F 1 704 1101 CLA CLA . 
AA 24 SF4 I 1 201 201 SF4 SF4 . 
BA 24 SF4 I 1 202 202 SF4 SF4 . 
CA 24 SF4 K 1 501 501 SF4 SF4 . 
DA 21 SQD K 1 502 701 SQD SQD . 
EA 19 DGD L 1 401 401 DGD DGD . 
FA 21 SQD L 1 402 601 SQD SQD . 
GA 25 ZN P 1 501 1 ZN ZN . 
HA 26 HOH P 1 601 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 SQD . . . W 21 180.35 201.473 243.979 1 55.92 ? O6 SQD 701 F 1 
HETATM 2 C C44 SQD . . . W 21 179.882 202.124 245.144 1 55.92 ? C44 SQD 701 F 1 
HETATM 3 C C45 SQD . . . W 21 181.089 202.551 245.949 1 55.92 ? C45 SQD 701 F 1 
HETATM 4 C C46 SQD . . . W 21 181.687 203.755 245.256 1 55.92 ? C46 SQD 701 F 1 
HETATM 5 O O47 SQD . . . W 21 180.691 202.888 247.265 1 55.92 ? O47 SQD 701 F 1 
HETATM 6 C C7 SQD . . . W 21 181.797 203.166 248.157 1 55.92 ? C7 SQD 701 F 1 
HETATM 7 O O49 SQD . . . W 21 182.327 204.251 248.116 1 55.92 ? O49 SQD 701 F 1 
HETATM 8 C C8 SQD . . . W 21 182.277 202.15 249.147 1 55.92 ? C8 SQD 701 F 1 
HETATM 9 C C9 SQD . . . W 21 183.742 202.424 249.424 1 55.92 ? C9 SQD 701 F 1 
HETATM 10 C C10 SQD . . . W 21 184.06 202.472 250.907 1 55.92 ? C10 SQD 701 F 1 
HETATM 11 C C11 SQD . . . W 21 185.565 202.401 251.085 1 55.92 ? C11 SQD 701 F 1 
HETATM 12 C C12 SQD . . . W 21 185.961 202.894 252.458 1 55.92 ? C12 SQD 701 F 1 
HETATM 13 C C13 SQD . . . W 21 187.162 203.809 252.36 1 55.92 ? C13 SQD 701 F 1 
HETATM 14 C C14 SQD . . . W 21 188.408 202.963 252.258 1 55.92 ? C14 SQD 701 F 1 
HETATM 15 C C15 SQD . . . W 21 189.657 203.818 252.3 1 55.92 ? C15 SQD 701 F 1 
HETATM 16 C C16 SQD . . . W 21 189.736 204.584 253.601 1 55.92 ? C16 SQD 701 F 1 
HETATM 17 C C17 SQD . . . W 21 189.727 206.075 253.296 1 55.92 ? C17 SQD 701 F 1 
HETATM 18 C C18 SQD . . . W 21 190.5 206.856 254.349 1 55.92 ? C18 SQD 701 F 1 
HETATM 19 C C19 SQD . . . W 21 190.579 208.332 253.99 1 55.92 ? C19 SQD 701 F 1 
HETATM 20 C C20 SQD . . . W 21 189.191 208.935 253.854 1 55.92 ? C20 SQD 701 F 1 
HETATM 21 C C21 SQD . . . W 21 189.268 210.451 253.913 1 55.92 ? C21 SQD 701 F 1 
HETATM 22 C C22 SQD . . . W 21 189.877 210.9 255.218 1 55.92 ? C22 SQD 701 F 1 
HETATM 23 O O48 SQD . . . W 21 182.065 203.365 243.946 1 55.92 ? O48 SQD 701 F 1 
HETATM 24 C C23 SQD . . . W 21 183.394 202.853 243.712 1 55.92 ? C23 SQD 701 F 1 
HETATM 25 O O10 SQD . . . W 21 183.795 202.785 242.587 1 55.92 ? O10 SQD 701 F 1 
HETATM 26 C C24 SQD . . . W 21 184.268 202.41 244.835 1 55.92 ? C24 SQD 701 F 1 
HETATM 27 C C25 SQD . . . W 21 185.584 203.138 244.749 1 55.92 ? C25 SQD 701 F 1 
HETATM 28 C C26 SQD . . . W 21 186.585 202.41 245.613 1 55.92 ? C26 SQD 701 F 1 
HETATM 29 C C27 SQD . . . W 21 186.783 203.109 246.934 1 55.92 ? C27 SQD 701 F 1 
HETATM 30 C C28 SQD . . . W 21 188.232 203.528 247.054 1 55.92 ? C28 SQD 701 F 1 
HETATM 31 C C29 SQD . . . W 21 188.963 202.649 248.05 1 55.92 ? C29 SQD 701 F 1 
HETATM 32 C C30 SQD . . . W 21 190.396 203.128 248.222 1 55.92 ? C30 SQD 701 F 1 
HETATM 33 C C31 SQD . . . W 21 191.389 202.072 247.745 1 55.92 ? C31 SQD 701 F 1 
HETATM 34 C C32 SQD . . . W 21 192.718 202.715 247.36 1 55.92 ? C32 SQD 701 F 1 
HETATM 35 C C33 SQD . . . W 21 193.765 201.666 247.007 1 55.92 ? C33 SQD 701 F 1 
HETATM 36 C C34 SQD . . . W 21 194.372 201.051 248.261 1 55.92 ? C34 SQD 701 F 1 
HETATM 37 C C35 SQD . . . W 21 195.564 201.853 248.76 1 55.92 ? C35 SQD 701 F 1 
HETATM 38 C C36 SQD . . . W 21 196.876 201.233 248.309 1 55.92 ? C36 SQD 701 F 1 
HETATM 39 C C37 SQD . . . W 21 197.608 202.163 247.348 1 55.92 ? C37 SQD 701 F 1 
HETATM 40 C C38 SQD . . . W 21 197.797 203.536 247.955 1 55.92 ? C38 SQD 701 F 1 
HETATM 41 C C1 SQD . . . W 21 179.312 200.721 243.391 1 55.92 ? C1 SQD 701 F 1 
HETATM 42 C C2 SQD . . . W 21 179.536 200.546 241.922 1 55.92 ? C2 SQD 701 F 1 
HETATM 43 O O2 SQD . . . W 21 179.825 201.796 241.339 1 55.92 ? O2 SQD 701 F 1 
HETATM 44 C C3 SQD . . . W 21 178.237 200.033 241.387 1 55.92 ? C3 SQD 701 F 1 
HETATM 45 O O3 SQD . . . W 21 178.298 199.952 239.976 1 55.92 ? O3 SQD 701 F 1 
HETATM 46 C C4 SQD . . . W 21 177.986 198.678 241.976 1 55.92 ? C4 SQD 701 F 1 
HETATM 47 O O4 SQD . . . W 21 176.677 198.303 241.575 1 55.92 ? O4 SQD 701 F 1 
HETATM 48 C C5 SQD . . . W 21 178.08 198.734 243.49 1 55.92 ? C5 SQD 701 F 1 
HETATM 49 C C6 SQD . . . W 21 178.129 197.348 244.092 1 55.92 ? C6 SQD 701 F 1 
HETATM 50 O O5 SQD . . . W 21 179.256 199.412 243.904 1 55.92 ? O5 SQD 701 F 1 
HETATM 51 S S SQD . . . W 21 177.871 197.51 245.706 1 55.92 ? S SQD 701 F 1 
HETATM 52 O O7 SQD . . . W 21 178.144 198.828 246.124 1 55.92 ? O7 SQD 701 F 1 
HETATM 53 O O8 SQD . . . W 21 176.316 197.208 246.002 1 55.92 ? O8 SQD 701 F 1 
HETATM 54 O O9 SQD . . . W 21 178.674 196.646 246.479 1 55.92 ? O9 SQD 701 F 1 
#
_model_server_stats.io_time_ms              27 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           343 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           54 
#