data_6TK2 # _model_server_result.job_id oG7oeydai6oe8_rYOdsEBQ _model_server_result.datetime_utc '2024-11-23 20:53:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tk2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CA","auth_seq_id":328}' # _entry.id 6TK2 # _exptl.entry_id 6TK2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TK2 _cell.length_a 41.54 _cell.length_b 84.48 _cell.length_c 235.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TK2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id CA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 255 A LYS 255 1_555 B C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? metalc ? metalc1 A OD1 ASN 112 A ASN 112 1_555 CA NA NA . A NA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc2 A OD1 ASP 251 A ASP 251 1_555 CA NA NA . A NA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.929 ? metalc ? metalc3 A OD2 ASP 251 A ASP 251 1_555 CA NA NA . A NA 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TK2 _atom_sites.fract_transf_matrix[1][1] 0.024073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 501 LFA LFA . D 3 LFA A 1 303 502 LFA LFA . E 3 LFA A 1 304 503 LFA LFA . F 3 LFA A 1 305 504 LFA LFA . G 3 LFA A 1 306 505 LFA LFA . H 3 LFA A 1 307 506 LFA LFA . I 3 LFA A 1 308 507 LFA LFA . J 3 LFA A 1 309 508 LFA LFA . K 3 LFA A 1 310 509 LFA LFA . L 3 LFA A 1 311 510 LFA LFA . M 3 LFA A 1 312 511 LFA LFA . N 3 LFA A 1 313 512 LFA LFA . O 3 LFA A 1 314 513 LFA LFA . P 3 LFA A 1 315 515 LFA LFA . Q 3 LFA A 1 316 516 LFA LFA . R 3 LFA A 1 317 517 LFA LFA . S 3 LFA A 1 318 518 LFA LFA . T 3 LFA A 1 319 519 LFA LFA . U 3 LFA A 1 320 520 LFA LFA . V 3 LFA A 1 321 521 LFA LFA . W 3 LFA A 1 322 523 LFA LFA . X 3 LFA A 1 323 525 LFA LFA . Y 3 LFA A 1 324 527 LFA LFA . Z 3 LFA A 1 325 529 LFA LFA . AA 3 LFA A 1 326 532 LFA LFA . BA 3 LFA A 1 327 533 LFA LFA . CA 4 NA A 1 328 601 NA NA . DA 5 HOH A 1 420 420 HOH HOH . DA 5 HOH A 2 486 486 HOH HOH . DA 5 HOH A 3 488 488 HOH HOH . DA 5 HOH A 4 417 417 HOH HOH . DA 5 HOH A 5 461 461 HOH HOH . DA 5 HOH A 6 429 429 HOH HOH . DA 5 HOH A 7 421 421 HOH HOH . DA 5 HOH A 8 422 422 HOH HOH . DA 5 HOH A 9 403 403 HOH HOH . DA 5 HOH A 10 484 484 HOH HOH . DA 5 HOH A 11 433 433 HOH HOH . DA 5 HOH A 12 416 416 HOH HOH . DA 5 HOH A 13 487 487 HOH HOH . DA 5 HOH A 14 489 489 HOH HOH . DA 5 HOH A 15 459 459 HOH HOH . DA 5 HOH A 16 401 401 HOH HOH . DA 5 HOH A 17 407 407 HOH HOH . DA 5 HOH A 18 436 436 HOH HOH . DA 5 HOH A 19 414 414 HOH HOH . DA 5 HOH A 20 428 428 HOH HOH . DA 5 HOH A 21 456 456 HOH HOH . DA 5 HOH A 22 431 431 HOH HOH . DA 5 HOH A 23 450 450 HOH HOH . DA 5 HOH A 24 404 404 HOH HOH . DA 5 HOH A 25 427 427 HOH HOH . DA 5 HOH A 26 405 405 HOH HOH . DA 5 HOH A 27 478 478 HOH HOH . DA 5 HOH A 28 409 409 HOH HOH . DA 5 HOH A 29 402 402 HOH HOH . DA 5 HOH A 30 472 472 HOH HOH . DA 5 HOH A 31 455 455 HOH HOH . DA 5 HOH A 32 438 438 HOH HOH . DA 5 HOH A 33 444 444 HOH HOH . DA 5 HOH A 34 447 447 HOH HOH . DA 5 HOH A 35 410 410 HOH HOH . DA 5 HOH A 36 413 413 HOH HOH . DA 5 HOH A 37 483 483 HOH HOH . DA 5 HOH A 38 408 408 HOH HOH . DA 5 HOH A 39 475 475 HOH HOH . DA 5 HOH A 40 425 425 HOH HOH . DA 5 HOH A 41 464 464 HOH HOH . DA 5 HOH A 42 465 465 HOH HOH . DA 5 HOH A 43 446 446 HOH HOH . DA 5 HOH A 44 419 419 HOH HOH . DA 5 HOH A 45 445 445 HOH HOH . DA 5 HOH A 46 443 443 HOH HOH . DA 5 HOH A 47 454 454 HOH HOH . DA 5 HOH A 48 437 437 HOH HOH . DA 5 HOH A 49 439 439 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id CA _atom_site.label_entity_id 4 _atom_site.Cartn_x 61.199 _atom_site.Cartn_y 111.942 _atom_site.Cartn_z 263.205 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 328 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 370 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #