data_6TK4 # _model_server_result.job_id SBvKfBwo3As-3_sP1BNYxQ _model_server_result.datetime_utc '2024-11-23 20:54:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6TK4 # _exptl.entry_id 6TK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TK4 _cell.length_a 41.54 _cell.length_b 84.48 _cell.length_c 235.56 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.379 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 325 n n C1 C6 RET sing 326 n n C1 C16 RET sing 327 n n C1 C17 RET sing 328 n n C2 C3 RET sing 329 n n C2 H21 RET sing 330 n n C2 H22 RET sing 331 n n C3 C4 RET sing 332 n n C3 H31 RET sing 333 n n C3 H32 RET sing 334 n n C4 C5 RET sing 335 n n C4 H41 RET sing 336 n n C4 H42 RET sing 337 n n C5 C6 RET doub 338 n n C5 C18 RET sing 339 n n C6 C7 RET sing 340 n n C7 C8 RET doub 341 e n C7 H7 RET sing 342 n n C8 C9 RET sing 343 n n C8 H8 RET sing 344 n n C9 C10 RET doub 345 e n C9 C19 RET sing 346 n n C10 C11 RET sing 347 n n C10 H10 RET sing 348 n n C11 C12 RET doub 349 e n C11 H11 RET sing 350 n n C12 C13 RET sing 351 n n C12 H12 RET sing 352 n n C13 C14 RET doub 353 e n C13 C20 RET sing 354 n n C14 C15 RET sing 355 n n C14 H14 RET sing 356 n n C15 O1 RET doub 357 n n C15 H15 RET sing 358 n n C16 H161 RET sing 359 n n C16 H162 RET sing 360 n n C16 H163 RET sing 361 n n C17 H171 RET sing 362 n n C17 H172 RET sing 363 n n C17 H173 RET sing 364 n n C18 H181 RET sing 365 n n C18 H182 RET sing 366 n n C18 H183 RET sing 367 n n C19 H191 RET sing 368 n n C19 H192 RET sing 369 n n C19 H193 RET sing 370 n n C20 H201 RET sing 371 n n C20 H202 RET sing 372 n n C20 H203 RET sing 373 n n # _atom_sites.entry_id 6TK4 _atom_sites.fract_transf_matrix[1][1] 0.024073 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 501 LFA LFA . D 3 LFA A 1 303 502 LFA LFA . E 3 LFA A 1 304 503 LFA LFA . F 3 LFA A 1 305 504 LFA LFA . G 3 LFA A 1 306 505 LFA LFA . H 3 LFA A 1 307 506 LFA LFA . I 3 LFA A 1 308 507 LFA LFA . J 3 LFA A 1 309 508 LFA LFA . K 3 LFA A 1 310 509 LFA LFA . L 3 LFA A 1 311 510 LFA LFA . M 3 LFA A 1 312 511 LFA LFA . N 3 LFA A 1 313 512 LFA LFA . O 3 LFA A 1 314 513 LFA LFA . P 3 LFA A 1 315 515 LFA LFA . Q 3 LFA A 1 316 516 LFA LFA . R 3 LFA A 1 317 517 LFA LFA . S 3 LFA A 1 318 518 LFA LFA . T 3 LFA A 1 319 519 LFA LFA . U 3 LFA A 1 320 520 LFA LFA . V 3 LFA A 1 321 521 LFA LFA . W 3 LFA A 1 322 523 LFA LFA . X 3 LFA A 1 323 525 LFA LFA . Y 3 LFA A 1 324 527 LFA LFA . Z 3 LFA A 1 325 529 LFA LFA . AA 3 LFA A 1 326 532 LFA LFA . BA 3 LFA A 1 327 533 LFA LFA . CA 4 HOH A 1 420 420 HOH HOH . CA 4 HOH A 2 487 487 HOH HOH . CA 4 HOH A 3 454 454 HOH HOH . CA 4 HOH A 4 461 461 HOH HOH . CA 4 HOH A 5 407 407 HOH HOH . CA 4 HOH A 6 475 475 HOH HOH . CA 4 HOH A 7 416 416 HOH HOH . CA 4 HOH A 8 414 414 HOH HOH . CA 4 HOH A 9 431 431 HOH HOH . CA 4 HOH A 10 401 401 HOH HOH . CA 4 HOH A 11 433 433 HOH HOH . CA 4 HOH A 12 445 445 HOH HOH . CA 4 HOH A 13 455 455 HOH HOH . CA 4 HOH A 14 409 409 HOH HOH . CA 4 HOH A 15 447 447 HOH HOH . CA 4 HOH A 16 422 422 HOH HOH . CA 4 HOH A 17 421 421 HOH HOH . CA 4 HOH A 18 484 484 HOH HOH . CA 4 HOH A 19 403 403 HOH HOH . CA 4 HOH A 20 404 404 HOH HOH . CA 4 HOH A 21 406 406 HOH HOH . CA 4 HOH A 22 417 417 HOH HOH . CA 4 HOH A 23 444 444 HOH HOH . CA 4 HOH A 24 405 405 HOH HOH . CA 4 HOH A 25 459 459 HOH HOH . CA 4 HOH A 26 427 427 HOH HOH . CA 4 HOH A 27 464 464 HOH HOH . CA 4 HOH A 28 429 429 HOH HOH . CA 4 HOH A 29 428 428 HOH HOH . CA 4 HOH A 30 402 402 HOH HOH . CA 4 HOH A 31 408 408 HOH HOH . CA 4 HOH A 32 436 436 HOH HOH . CA 4 HOH A 33 456 456 HOH HOH . CA 4 HOH A 34 413 413 HOH HOH . CA 4 HOH A 35 472 472 HOH HOH . CA 4 HOH A 36 483 483 HOH HOH . CA 4 HOH A 37 450 450 HOH HOH . CA 4 HOH A 38 488 488 HOH HOH . CA 4 HOH A 39 478 478 HOH HOH . CA 4 HOH A 40 410 410 HOH HOH . CA 4 HOH A 41 486 486 HOH HOH . CA 4 HOH A 42 425 425 HOH HOH . CA 4 HOH A 43 465 465 HOH HOH . CA 4 HOH A 44 419 419 HOH HOH . CA 4 HOH A 45 415 415 HOH HOH . CA 4 HOH A 46 438 438 HOH HOH . CA 4 HOH A 47 446 446 HOH HOH . CA 4 HOH A 48 443 443 HOH HOH . CA 4 HOH A 49 437 437 HOH HOH . CA 4 HOH A 50 439 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 64.507 101.378 262.889 1 29.53 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 65.081 100.238 262.028 1 35.28 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 64.423 98.887 262.257 1 33.3 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 64.558 98.494 263.713 1 35.91 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 64.121 99.587 264.652 1 44.07 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 64.103 100.888 264.298 1 36.45 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 63.713 101.876 265.315 1 32.98 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 63.391 103.169 265.307 1 35.43 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 63.036 103.937 266.484 1 40.8 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 62.964 105.286 266.404 1 25.84 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 62.927 106.188 267.483 1 33.07 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 62.824 107.518 267.412 1 35.5 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 62.876 108.389 268.563 1 28.19 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 62.555 109.702 268.449 1 17.6 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 62.097 110.338 267.247 1 24.42 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 65.594 102.456 262.986 1 23.37 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 63.3 101.951 262.131 1 23.13 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 63.69 99.071 266 1 28.3 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 62.892 103.195 267.785 1 31.07 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 63.337 107.776 269.851 1 20.04 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #