data_6TK5
#
_model_server_result.job_id            WyDwm-TNubExBrK1kNGUNQ 
_model_server_result.datetime_utc      '2024-11-08 04:18:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tk5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6TK5 
#
_exptl.entry_id    6TK5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TK5 
_cell.length_a            41.54 
_cell.length_b            84.48 
_cell.length_c            235.56 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            NZ 
_struct_conn.ptnr1_label_comp_id            LYS 
_struct_conn.ptnr1_label_seq_id             255 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             LYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            C15 
_struct_conn.ptnr2_label_comp_id            RET 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             RET 
_struct_conn.ptnr2_auth_seq_id              301 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.423 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 325 n n 
C1 C6 RET sing 326 n n 
C1 C16 RET sing 327 n n 
C1 C17 RET sing 328 n n 
C2 C3 RET sing 329 n n 
C2 H21 RET sing 330 n n 
C2 H22 RET sing 331 n n 
C3 C4 RET sing 332 n n 
C3 H31 RET sing 333 n n 
C3 H32 RET sing 334 n n 
C4 C5 RET sing 335 n n 
C4 H41 RET sing 336 n n 
C4 H42 RET sing 337 n n 
C5 C6 RET doub 338 n n 
C5 C18 RET sing 339 n n 
C6 C7 RET sing 340 n n 
C7 C8 RET doub 341 e n 
C7 H7 RET sing 342 n n 
C8 C9 RET sing 343 n n 
C8 H8 RET sing 344 n n 
C9 C10 RET doub 345 e n 
C9 C19 RET sing 346 n n 
C10 C11 RET sing 347 n n 
C10 H10 RET sing 348 n n 
C11 C12 RET doub 349 e n 
C11 H11 RET sing 350 n n 
C12 C13 RET sing 351 n n 
C12 H12 RET sing 352 n n 
C13 C14 RET doub 353 e n 
C13 C20 RET sing 354 n n 
C14 C15 RET sing 355 n n 
C14 H14 RET sing 356 n n 
C15 O1 RET doub 357 n n 
C15 H15 RET sing 358 n n 
C16 H161 RET sing 359 n n 
C16 H162 RET sing 360 n n 
C16 H163 RET sing 361 n n 
C17 H171 RET sing 362 n n 
C17 H172 RET sing 363 n n 
C17 H173 RET sing 364 n n 
C18 H181 RET sing 365 n n 
C18 H182 RET sing 366 n n 
C18 H183 RET sing 367 n n 
C19 H191 RET sing 368 n n 
C19 H192 RET sing 369 n n 
C19 H193 RET sing 370 n n 
C20 H201 RET sing 371 n n 
C20 H202 RET sing 372 n n 
C20 H203 RET sing 373 n n 
#
_atom_sites.entry_id                     6TK5 
_atom_sites.fract_transf_matrix[1][1]    0.024073 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011837 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004245 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 LFA A 1 302 501 LFA LFA . 
D 3 LFA A 1 303 502 LFA LFA . 
E 3 LFA A 1 304 503 LFA LFA . 
F 3 LFA A 1 305 504 LFA LFA . 
G 3 LFA A 1 306 505 LFA LFA . 
H 3 LFA A 1 307 506 LFA LFA . 
I 3 LFA A 1 308 507 LFA LFA . 
J 3 LFA A 1 309 508 LFA LFA . 
K 3 LFA A 1 310 509 LFA LFA . 
L 3 LFA A 1 311 510 LFA LFA . 
M 3 LFA A 1 312 511 LFA LFA . 
N 3 LFA A 1 313 512 LFA LFA . 
O 3 LFA A 1 314 513 LFA LFA . 
P 3 LFA A 1 315 515 LFA LFA . 
Q 3 LFA A 1 316 516 LFA LFA . 
R 3 LFA A 1 317 517 LFA LFA . 
S 3 LFA A 1 318 518 LFA LFA . 
T 3 LFA A 1 319 519 LFA LFA . 
U 3 LFA A 1 320 520 LFA LFA . 
V 3 LFA A 1 321 521 LFA LFA . 
W 3 LFA A 1 322 523 LFA LFA . 
X 3 LFA A 1 323 525 LFA LFA . 
Y 3 LFA A 1 324 527 LFA LFA . 
Z 3 LFA A 1 325 529 LFA LFA . 
AA 3 LFA A 1 326 532 LFA LFA . 
BA 3 LFA A 1 327 533 LFA LFA . 
CA 4 HOH A 1 433 433 HOH HOH . 
CA 4 HOH A 2 486 486 HOH HOH . 
CA 4 HOH A 3 407 407 HOH HOH . 
CA 4 HOH A 4 487 487 HOH HOH . 
CA 4 HOH A 5 454 454 HOH HOH . 
CA 4 HOH A 6 416 416 HOH HOH . 
CA 4 HOH A 7 414 414 HOH HOH . 
CA 4 HOH A 8 475 475 HOH HOH . 
CA 4 HOH A 9 484 484 HOH HOH . 
CA 4 HOH A 10 438 438 HOH HOH . 
CA 4 HOH A 11 410 410 HOH HOH . 
CA 4 HOH A 12 420 420 HOH HOH . 
CA 4 HOH A 13 464 464 HOH HOH . 
CA 4 HOH A 14 485 485 HOH HOH . 
CA 4 HOH A 15 413 413 HOH HOH . 
CA 4 HOH A 16 409 409 HOH HOH . 
CA 4 HOH A 17 421 421 HOH HOH . 
CA 4 HOH A 18 404 404 HOH HOH . 
CA 4 HOH A 19 401 401 HOH HOH . 
CA 4 HOH A 20 431 431 HOH HOH . 
CA 4 HOH A 21 403 403 HOH HOH . 
CA 4 HOH A 22 436 436 HOH HOH . 
CA 4 HOH A 23 405 405 HOH HOH . 
CA 4 HOH A 24 461 461 HOH HOH . 
CA 4 HOH A 25 456 456 HOH HOH . 
CA 4 HOH A 26 417 417 HOH HOH . 
CA 4 HOH A 27 427 427 HOH HOH . 
CA 4 HOH A 28 472 472 HOH HOH . 
CA 4 HOH A 29 406 406 HOH HOH . 
CA 4 HOH A 30 455 455 HOH HOH . 
CA 4 HOH A 31 422 422 HOH HOH . 
CA 4 HOH A 32 402 402 HOH HOH . 
CA 4 HOH A 33 459 459 HOH HOH . 
CA 4 HOH A 34 408 408 HOH HOH . 
CA 4 HOH A 35 483 483 HOH HOH . 
CA 4 HOH A 36 482 482 HOH HOH . 
CA 4 HOH A 37 415 415 HOH HOH . 
CA 4 HOH A 38 450 450 HOH HOH . 
CA 4 HOH A 39 428 428 HOH HOH . 
CA 4 HOH A 40 425 425 HOH HOH . 
CA 4 HOH A 41 478 478 HOH HOH . 
CA 4 HOH A 42 445 445 HOH HOH . 
CA 4 HOH A 43 488 488 HOH HOH . 
CA 4 HOH A 44 429 429 HOH HOH . 
CA 4 HOH A 45 419 419 HOH HOH . 
CA 4 HOH A 46 447 447 HOH HOH . 
CA 4 HOH A 47 444 444 HOH HOH . 
CA 4 HOH A 48 446 446 HOH HOH . 
CA 4 HOH A 49 437 437 HOH HOH . 
CA 4 HOH A 50 443 443 HOH HOH . 
CA 4 HOH A 51 465 465 HOH HOH . 
CA 4 HOH A 52 477 477 HOH HOH . 
CA 4 HOH A 53 439 439 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . B 2 64.441 101.135 262.797 1 35.54 ? C1 RET 301 A 1 
HETATM 2 C C2 RET . . . B 2 65.016 100.035 261.885 1 40.62 ? C2 RET 301 A 1 
HETATM 3 C C3 RET . . . B 2 64.483 98.641 262.18 1 43.4 ? C3 RET 301 A 1 
HETATM 4 C C4 RET . . . B 2 64.776 98.277 263.622 1 45.79 ? C4 RET 301 A 1 
HETATM 5 C C5 RET . . . B 2 64.377 99.351 264.599 1 42.25 ? C5 RET 301 A 1 
HETATM 6 C C6 RET . . . B 2 64.222 100.638 264.24 1 44.53 ? C6 RET 301 A 1 
HETATM 7 C C7 RET . . . B 2 63.778 101.615 265.278 1 37.08 ? C7 RET 301 A 1 
HETATM 8 C C8 RET . . . B 2 63.552 102.934 265.283 1 37.88 ? C8 RET 301 A 1 
HETATM 9 C C9 RET . . . B 2 63.097 103.713 266.421 1 38.02 ? C9 RET 301 A 1 
HETATM 10 C C10 RET . . . B 2 63.007 105.061 266.319 1 35.05 ? C10 RET 301 A 1 
HETATM 11 C C11 RET . . . B 2 62.774 105.972 267.379 1 32.84 ? C11 RET 301 A 1 
HETATM 12 C C12 RET . . . B 2 62.65 107.296 267.295 1 34.86 ? C12 RET 301 A 1 
HETATM 13 C C13 RET . . . B 2 62.514 108.168 268.445 1 27.39 ? C13 RET 301 A 1 
HETATM 14 C C14 RET . . . B 2 62.251 109.488 268.286 1 21.69 ? C14 RET 301 A 1 
HETATM 15 C C15 RET . . . B 2 61.967 110.22 267.083 1 30.33 ? C15 RET 301 A 1 
HETATM 16 C C16 RET . . . B 2 65.437 102.299 262.763 1 37.84 ? C16 RET 301 A 1 
HETATM 17 C C17 RET . . . B 2 63.111 101.602 262.2 1 30.1 ? C17 RET 301 A 1 
HETATM 18 C C18 RET . . . B 2 64.172 98.833 265.995 1 44.96 ? C18 RET 301 A 1 
HETATM 19 C C19 RET . . . B 2 62.801 102.98 267.702 1 32.68 ? C19 RET 301 A 1 
HETATM 20 C C20 RET . . . B 2 62.762 107.556 269.791 1 22.56 ? C20 RET 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#