data_6TK8
#
_model_server_result.job_id            RpQCmkCKVCNfTQN1HiB9OA 
_model_server_result.datetime_utc      '2024-11-25 21:44:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tk8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    6TK8 
#
_exptl.entry_id    6TK8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.331 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TK8 
_cell.length_a            112.59 
_cell.length_b            112.59 
_cell.length_c            104.3 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TK8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 -x+1/2,y,-z-1/4 -1 0 0 0 1 0 0 0 -1 56.295 0 -26.075 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H18 N3 O6 S 1' 
_chem_comp.formula_weight    308.331 
_chem_comp.id                VDW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{S})-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-sulfanyl-propan-2-yl]amino]-1-oxidanyl-1,5-bis(oxidanylidene)pentan-2-yl]azanium' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
SG2 CB2 VDW sing 376 n n 
CB2 CA2 VDW sing 377 n n 
CA2 N2 VDW sing 378 n n 
CA2 C2 VDW sing 379 n n 
N2 CD1 VDW sing 380 n n 
O11 C1 VDW doub 381 n n 
CG1 CD1 VDW sing 382 n n 
CG1 CB1 VDW sing 383 n n 
O12 C1 VDW sing 384 n n 
CD1 OE1 VDW doub 385 n n 
C1 CA1 VDW sing 386 n n 
N1 CA1 VDW sing 387 n n 
C2 N3 VDW sing 388 n n 
C2 O2 VDW doub 389 n n 
N3 CA3 VDW sing 390 n n 
CA1 CB1 VDW sing 391 n n 
CA3 C3 VDW sing 392 n n 
C3 O31 VDW doub 393 n n 
C3 O32 VDW sing 394 n n 
N1 HN13 VDW sing 395 n n 
N1 HN11 VDW sing 396 n n 
N1 HN12 VDW sing 397 n n 
CA1 HA1 VDW sing 398 n n 
O12 H1 VDW sing 399 n n 
CB1 HB13 VDW sing 400 n n 
CB1 HB12 VDW sing 401 n n 
CG1 HG13 VDW sing 402 n n 
CG1 HG12 VDW sing 403 n n 
N2 HN2 VDW sing 404 n n 
CA2 HA2 VDW sing 405 n n 
CB2 HB23 VDW sing 406 n n 
CB2 HB22 VDW sing 407 n n 
SG2 HSG VDW sing 408 n n 
N3 HN3 VDW sing 409 n n 
CA3 HA31 VDW sing 410 n n 
CA3 HA32 VDW sing 411 n n 
O32 H2 VDW sing 412 n n 
#
_atom_sites.entry_id                     6TK8 
_atom_sites.fract_transf_matrix[1][1]    0.008882 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008882 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VDW AAA 1 301 1 VDW GSH . 
C 3 HOH AAA 1 401 5 HOH HOH . 
C 3 HOH AAA 2 402 6 HOH HOH . 
C 3 HOH AAA 3 403 8 HOH HOH . 
C 3 HOH AAA 4 404 9 HOH HOH . 
C 3 HOH AAA 5 405 10 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 VDW . . . B 2 20.852 5.45 -13.22 1 104.07 ? N1 VDW 301 AAA 1 
HETATM 2 C CA1 VDW . . . B 2 19.681 4.744 -12.625 1 90.56 ? CA1 VDW 301 AAA 1 
HETATM 3 C C1 VDW . . . B 2 19.473 3.417 -13.381 1 83.17 ? C1 VDW 301 AAA 1 
HETATM 4 O O11 VDW . . . B 2 18.334 3.178 -13.823 1 69.49 ? O11 VDW 301 AAA 1 
HETATM 5 O O12 VDW . . . B 2 20.474 2.643 -13.485 1 94.89 ? O12 VDW 301 AAA 1 
HETATM 6 C CB1 VDW . . . B 2 18.449 5.67 -12.545 1 88.43 ? CB1 VDW 301 AAA 1 
HETATM 7 C CG1 VDW . . . B 2 18.082 6.461 -13.803 1 78.03 ? CG1 VDW 301 AAA 1 
HETATM 8 C CD1 VDW . . . B 2 17.2 7.645 -13.46 1 78.2 ? CD1 VDW 301 AAA 1 
HETATM 9 O OE1 VDW . . . B 2 17.466 8.378 -12.517 1 81.79 ? OE1 VDW 301 AAA 1 
HETATM 10 N N2 VDW . . . B 2 16.086 7.811 -14.183 1 87.75 ? N2 VDW 301 AAA 1 
HETATM 11 C CA2 VDW . . . B 2 15.385 9.081 -14.346 1 85.98 ? CA2 VDW 301 AAA 1 
HETATM 12 C C2 VDW . . . B 2 14.49 9.551 -13.179 1 84.16 ? C2 VDW 301 AAA 1 
HETATM 13 O O2 VDW . . . B 2 13.739 8.768 -12.599 1 72.51 ? O2 VDW 301 AAA 1 
HETATM 14 C CB2 VDW . . . B 2 14.551 9.077 -15.616 1 85.41 ? CB2 VDW 301 AAA 1 
HETATM 15 S SG2 VDW . . . B 2 14.203 10.723 -16.29 1 115.89 ? SG2 VDW 301 AAA 1 
HETATM 16 N N3 VDW . . . B 2 14.537 10.85 -12.877 1 88.91 ? N3 VDW 301 AAA 1 
HETATM 17 C CA3 VDW . . . B 2 13.67 11.439 -11.882 1 101.31 ? CA3 VDW 301 AAA 1 
HETATM 18 C C3 VDW . . . B 2 14.279 11.438 -10.482 1 111.66 ? C3 VDW 301 AAA 1 
HETATM 19 O O31 VDW . . . B 2 15.334 10.789 -10.327 1 110.54 ? O31 VDW 301 AAA 1 
HETATM 20 O O32 VDW . . . B 2 13.685 12.099 -9.594 1 115.34 ? O32 VDW 301 AAA 1 
HETATM 21 H HN13 VDW . . . B 2 21.542 5.464 -12.627 1 104.07 ? HN13 VDW 301 AAA 1 
HETATM 22 H HN11 VDW . . . B 2 20.626 6.307 -13.43 1 104.07 ? HN11 VDW 301 AAA 1 
HETATM 23 H HN12 VDW . . . B 2 21.123 5.023 -13.977 1 104.07 ? HN12 VDW 301 AAA 1 
HETATM 24 H HA1 VDW . . . B 2 19.961 4.503 -11.712 1 90.56 ? HA1 VDW 301 AAA 1 
HETATM 25 H HB13 VDW . . . B 2 17.658 5.133 -12.33 1 88.43 ? HB13 VDW 301 AAA 1 
HETATM 26 H HB12 VDW . . . B 2 18.596 6.34 -11.845 1 88.43 ? HB12 VDW 301 AAA 1 
HETATM 27 H HG13 VDW . . . B 2 18.904 6.787 -14.225 1 78.03 ? HG13 VDW 301 AAA 1 
HETATM 28 H HG12 VDW . . . B 2 17.6 5.872 -14.42 1 78.03 ? HG12 VDW 301 AAA 1 
HETATM 29 H HN2 VDW . . . B 2 15.758 7.108 -14.584 1 87.75 ? HN2 VDW 301 AAA 1 
HETATM 30 H HA2 VDW . . . B 2 16.085 9.759 -14.474 1 85.98 ? HA2 VDW 301 AAA 1 
HETATM 31 H HB23 VDW . . . B 2 15.029 8.557 -16.294 1 85.41 ? HB23 VDW 301 AAA 1 
HETATM 32 H HB22 VDW . . . B 2 13.7 8.633 -15.422 1 85.41 ? HB22 VDW 301 AAA 1 
HETATM 33 H HSG VDW . . . B 2 13.558 10.365 -17.24 0 115.89 ? HSG VDW 301 AAA 1 
HETATM 34 H HN3 VDW . . . B 2 15.111 11.356 -13.297 1 88.91 ? HN3 VDW 301 AAA 1 
HETATM 35 H HA31 VDW . . . B 2 12.835 10.926 -11.852 1 101.31 ? HA31 VDW 301 AAA 1 
HETATM 36 H HA32 VDW . . . B 2 13.49 12.368 -12.135 1 101.31 ? HA32 VDW 301 AAA 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           36 
#