data_6TKI # _model_server_result.job_id OgahYfxOdwN4aUvkKIsmJg _model_server_result.datetime_utc '2024-10-19 19:41:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tki # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 6TKI # _exptl.entry_id 6TKI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TKI _cell.length_a 112.696 _cell.length_b 112.696 _cell.length_c 60.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TKI _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 293 1_555 B SG CYS 119 H CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 B SG CYS 28 H CYS 348 1_555 B SG CYS 44 H CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 173 H CYS 493 1_555 B SG CYS 187 H CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 B SG CYS 201 H CYS 521 1_555 B SG CYS 231 H CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 B ND2 ASN 53 H ASN 373 1_555 D C1 NAG . H NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 C C ASP 29 I ASP 8 1_555 C N TYS 30 I TYS 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 C C TYS 30 I TYS 9 1_555 C N ASP 31 I ASP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 C C GLU 32 I GLU 11 1_555 C N TYS 33 I TYS 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 B O ARG 233 H ARG 553 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc2 B O LYS 236 H LYS 556 1_555 E NA NA . H NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 E NA NA . H NA 602 1_555 G O HOH . H HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc4 E NA NA . H NA 602 1_555 G O HOH . H HOH 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc5 E NA NA . H NA 602 1_555 G O HOH . H HOH 756 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc6 E NA NA . H NA 602 1_555 G O HOH . H HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TKI _atom_sites.fract_transf_matrix[1][1] 0.008873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG H 1 601 1 NAG NAG . E 5 NA H 1 602 1 NA NA . F 6 HOH L 1 401 151 HOH HOH . F 6 HOH L 2 402 87 HOH HOH . F 6 HOH L 3 403 5 HOH HOH . F 6 HOH L 4 404 171 HOH HOH . F 6 HOH L 5 405 1 HOH HOH . F 6 HOH L 6 406 28 HOH HOH . F 6 HOH L 7 407 152 HOH HOH . F 6 HOH L 8 408 116 HOH HOH . F 6 HOH L 9 409 101 HOH HOH . F 6 HOH L 10 410 73 HOH HOH . F 6 HOH L 11 411 47 HOH HOH . F 6 HOH L 12 412 4 HOH HOH . F 6 HOH L 13 413 3 HOH HOH . F 6 HOH L 14 414 2 HOH HOH . F 6 HOH L 15 415 170 HOH HOH . F 6 HOH L 16 416 91 HOH HOH . F 6 HOH L 17 417 106 HOH HOH . F 6 HOH L 18 418 125 HOH HOH . F 6 HOH L 19 419 93 HOH HOH . G 6 HOH H 1 701 158 HOH HOH . G 6 HOH H 2 702 58 HOH HOH . G 6 HOH H 3 703 110 HOH HOH . G 6 HOH H 4 704 165 HOH HOH . G 6 HOH H 5 705 139 HOH HOH . G 6 HOH H 6 706 99 HOH HOH . G 6 HOH H 7 707 161 HOH HOH . G 6 HOH H 8 708 147 HOH HOH . G 6 HOH H 9 709 153 HOH HOH . G 6 HOH H 10 710 95 HOH HOH . G 6 HOH H 11 711 74 HOH HOH . G 6 HOH H 12 712 113 HOH HOH . G 6 HOH H 13 713 142 HOH HOH . G 6 HOH H 14 714 30 HOH HOH . G 6 HOH H 15 715 52 HOH HOH . G 6 HOH H 16 716 64 HOH HOH . G 6 HOH H 17 717 82 HOH HOH . G 6 HOH H 18 718 127 HOH HOH . G 6 HOH H 19 719 24 HOH HOH . G 6 HOH H 20 720 8 HOH HOH . G 6 HOH H 21 721 56 HOH HOH . G 6 HOH H 22 722 17 HOH HOH . G 6 HOH H 23 723 22 HOH HOH . G 6 HOH H 24 724 69 HOH HOH . G 6 HOH H 25 725 42 HOH HOH . G 6 HOH H 26 726 119 HOH HOH . G 6 HOH H 27 727 98 HOH HOH . G 6 HOH H 28 728 111 HOH HOH . G 6 HOH H 29 729 25 HOH HOH . G 6 HOH H 30 730 21 HOH HOH . G 6 HOH H 31 731 118 HOH HOH . G 6 HOH H 32 732 79 HOH HOH . G 6 HOH H 33 733 44 HOH HOH . G 6 HOH H 34 734 38 HOH HOH . G 6 HOH H 35 735 15 HOH HOH . G 6 HOH H 36 736 9 HOH HOH . G 6 HOH H 37 737 134 HOH HOH . G 6 HOH H 38 738 26 HOH HOH . G 6 HOH H 39 739 7 HOH HOH . G 6 HOH H 40 740 6 HOH HOH . G 6 HOH H 41 741 29 HOH HOH . G 6 HOH H 42 742 35 HOH HOH . G 6 HOH H 43 743 57 HOH HOH . G 6 HOH H 44 744 65 HOH HOH . G 6 HOH H 45 745 169 HOH HOH . G 6 HOH H 46 746 10 HOH HOH . G 6 HOH H 47 747 16 HOH HOH . G 6 HOH H 48 748 39 HOH HOH . G 6 HOH H 49 749 155 HOH HOH . G 6 HOH H 50 750 31 HOH HOH . G 6 HOH H 51 751 66 HOH HOH . G 6 HOH H 52 752 45 HOH HOH . G 6 HOH H 53 753 114 HOH HOH . G 6 HOH H 54 754 13 HOH HOH . G 6 HOH H 55 755 11 HOH HOH . G 6 HOH H 56 756 72 HOH HOH . G 6 HOH H 57 757 40 HOH HOH . G 6 HOH H 58 758 117 HOH HOH . G 6 HOH H 59 759 49 HOH HOH . G 6 HOH H 60 760 36 HOH HOH . G 6 HOH H 61 761 85 HOH HOH . G 6 HOH H 62 762 34 HOH HOH . G 6 HOH H 63 763 48 HOH HOH . G 6 HOH H 64 764 23 HOH HOH . G 6 HOH H 65 765 138 HOH HOH . G 6 HOH H 66 766 55 HOH HOH . G 6 HOH H 67 767 166 HOH HOH . G 6 HOH H 68 768 70 HOH HOH . G 6 HOH H 69 769 126 HOH HOH . G 6 HOH H 70 770 14 HOH HOH . G 6 HOH H 71 771 59 HOH HOH . G 6 HOH H 72 772 137 HOH HOH . G 6 HOH H 73 773 68 HOH HOH . G 6 HOH H 74 774 156 HOH HOH . G 6 HOH H 75 775 89 HOH HOH . G 6 HOH H 76 776 46 HOH HOH . G 6 HOH H 77 777 12 HOH HOH . G 6 HOH H 78 778 80 HOH HOH . G 6 HOH H 79 779 76 HOH HOH . G 6 HOH H 80 780 32 HOH HOH . G 6 HOH H 81 781 78 HOH HOH . G 6 HOH H 82 782 144 HOH HOH . G 6 HOH H 83 783 53 HOH HOH . G 6 HOH H 84 784 75 HOH HOH . G 6 HOH H 85 785 84 HOH HOH . G 6 HOH H 86 786 43 HOH HOH . G 6 HOH H 87 787 133 HOH HOH . G 6 HOH H 88 788 18 HOH HOH . G 6 HOH H 89 789 149 HOH HOH . G 6 HOH H 90 790 61 HOH HOH . G 6 HOH H 91 791 50 HOH HOH . G 6 HOH H 92 792 96 HOH HOH . G 6 HOH H 93 793 109 HOH HOH . G 6 HOH H 94 794 159 HOH HOH . G 6 HOH H 95 795 100 HOH HOH . G 6 HOH H 96 796 143 HOH HOH . G 6 HOH H 97 797 154 HOH HOH . G 6 HOH H 98 798 88 HOH HOH . G 6 HOH H 99 799 67 HOH HOH . G 6 HOH H 100 800 83 HOH HOH . G 6 HOH H 101 801 124 HOH HOH . G 6 HOH H 102 802 130 HOH HOH . G 6 HOH H 103 803 51 HOH HOH . G 6 HOH H 104 804 41 HOH HOH . G 6 HOH H 105 805 94 HOH HOH . G 6 HOH H 106 806 140 HOH HOH . G 6 HOH H 107 807 146 HOH HOH . G 6 HOH H 108 808 71 HOH HOH . G 6 HOH H 109 809 112 HOH HOH . G 6 HOH H 110 810 122 HOH HOH . G 6 HOH H 111 811 128 HOH HOH . G 6 HOH H 112 812 136 HOH HOH . G 6 HOH H 113 813 102 HOH HOH . G 6 HOH H 114 814 104 HOH HOH . G 6 HOH H 115 815 123 HOH HOH . G 6 HOH H 116 816 19 HOH HOH . G 6 HOH H 117 817 37 HOH HOH . G 6 HOH H 118 818 115 HOH HOH . G 6 HOH H 119 819 148 HOH HOH . G 6 HOH H 120 820 157 HOH HOH . G 6 HOH H 121 821 92 HOH HOH . G 6 HOH H 122 822 164 HOH HOH . G 6 HOH H 123 823 132 HOH HOH . G 6 HOH H 124 824 107 HOH HOH . G 6 HOH H 125 825 168 HOH HOH . G 6 HOH H 126 826 129 HOH HOH . G 6 HOH H 127 827 60 HOH HOH . G 6 HOH H 128 828 90 HOH HOH . G 6 HOH H 129 829 120 HOH HOH . G 6 HOH H 130 830 145 HOH HOH . G 6 HOH H 131 831 108 HOH HOH . G 6 HOH H 132 832 167 HOH HOH . G 6 HOH H 133 833 81 HOH HOH . G 6 HOH H 134 834 63 HOH HOH . G 6 HOH H 135 835 131 HOH HOH . G 6 HOH H 136 836 86 HOH HOH . G 6 HOH H 137 837 103 HOH HOH . G 6 HOH H 138 838 105 HOH HOH . G 6 HOH H 139 839 97 HOH HOH . G 6 HOH H 140 840 160 HOH HOH . H 6 HOH I 1 101 121 HOH HOH . H 6 HOH I 2 102 54 HOH HOH . H 6 HOH I 3 103 20 HOH HOH . H 6 HOH I 4 104 33 HOH HOH . H 6 HOH I 5 105 62 HOH HOH . H 6 HOH I 6 106 27 HOH HOH . H 6 HOH I 7 107 163 HOH HOH . H 6 HOH I 8 108 77 HOH HOH . H 6 HOH I 9 109 150 HOH HOH . H 6 HOH I 10 110 162 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 8.305 _atom_site.Cartn_y 36.074 _atom_site.Cartn_z -11.366 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 53.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 602 _atom_site.auth_asym_id H _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #