data_6TKO # _model_server_result.job_id UB-SU5cWGn-DouDybmpTBA _model_server_result.datetime_utc '2024-11-08 19:12:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2001}' # _entry.id 6TKO # _exptl.entry_id 6TKO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 344.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TKO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 44 1_555 A SG CYS 72 A CYS 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 83 A CYS 114 1_555 A SG CYS 168 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 161 A CYS 192 1_555 A SG CYS 167 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 25 H CYS 25 1_555 C SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 C SG CYS 150 H CYS 150 1_555 C SG CYS 206 H CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 D SG CYS 24 L CYS 24 1_555 D SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 D SG CYS 135 L CYS 135 1_555 D SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A C GLU 313 A GLU 1356 1_555 A N SEP 314 A SEP 1357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 314 A SEP 1357 1_555 A N ALA 315 A ALA 1358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C ALA 315 A ALA 1358 1_555 A N TPO 316 A TPO 1359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C TPO 316 A TPO 1359 1_555 A N TPO 317 A TPO 1360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C TPO 317 A TPO 1360 1_555 A N ALA 318 A ALA 1361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 A C ALA 318 A ALA 1361 1_555 A N SEP 319 A SEP 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C SEP 319 A SEP 1362 1_555 A N SEP 320 A SEP 1363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C SEP 320 A SEP 1363 1_555 A N SEP 321 A SEP 1364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C SEP 321 A SEP 1364 1_555 A N LEU 322 A LEU 1365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C19 H24 N2 O4' _chem_comp.formula_weight 344.405 _chem_comp.id H98 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[5-[(1~{R})-2-[[(2~{R})-1-(4-methoxyphenyl)propan-2-yl]amino]-1-oxidanyl-ethyl]-2-oxidanyl-phenyl]methanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C16 H98 sing 129 n n O3 C19 H98 doub 130 n n N2 C19 H98 sing 131 n n N2 C15 H98 sing 132 n n C16 C15 H98 doub 133 n y C16 C17 H98 sing 134 n y C15 C14 H98 sing 135 n y C17 C18 H98 doub 136 n y C14 C13 H98 doub 137 n y C18 C13 H98 sing 138 n y C13 C12 H98 sing 139 n n C12 C11 H98 sing 140 n n C12 O4 H98 sing 141 n n C11 N1 H98 sing 142 n n N1 C2 H98 sing 143 n n C1 C2 H98 sing 144 n n C2 C3 H98 sing 145 n n C3 C4 H98 sing 146 n n C5 C4 H98 doub 147 n y C5 C6 H98 sing 148 n y C4 C9 H98 sing 149 n y C6 C7 H98 doub 150 n y C10 O1 H98 sing 151 n n C9 C8 H98 doub 152 n y C7 C8 H98 sing 153 n y C7 O1 H98 sing 154 n n C1 H1 H98 sing 155 n n C1 H2 H98 sing 156 n n C1 H3 H98 sing 157 n n C2 H4 H98 sing 158 n n C3 H5 H98 sing 159 n n C3 H6 H98 sing 160 n n C5 H7 H98 sing 161 n n C6 H8 H98 sing 162 n n C8 H9 H98 sing 163 n n C9 H10 H98 sing 164 n n C10 H11 H98 sing 165 n n C10 H12 H98 sing 166 n n C10 H13 H98 sing 167 n n N1 H14 H98 sing 168 n n C11 H16 H98 sing 169 n n C11 H17 H98 sing 170 n n C12 H18 H98 sing 171 n n C14 H19 H98 sing 172 n n C17 H20 H98 sing 173 n n C18 H21 H98 sing 174 n n O2 H22 H98 sing 175 n n N2 H23 H98 sing 176 n n C19 H24 H98 sing 177 n n O4 H25 H98 sing 178 n n # _atom_sites.entry_id 6TKO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 5 _pdbx_nonpoly_scheme.mon_id H98 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2001 _pdbx_nonpoly_scheme.auth_seq_num 2001 _pdbx_nonpoly_scheme.pdb_mon_id H98 _pdbx_nonpoly_scheme.auth_mon_id FMT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 H98 . . . E 5 140.139 162.477 133.33 1 115 ? C1 H98 2001 A 1 HETATM 2 C C2 H98 . . . E 5 140.411 162.339 131.827 1 115 ? C2 H98 2001 A 1 HETATM 3 C C3 H98 . . . E 5 139.738 163.553 131.113 1 115 ? C3 H98 2001 A 1 HETATM 4 C C4 H98 . . . E 5 140.714 164.589 130.609 1 115 ? C4 H98 2001 A 1 HETATM 5 C C5 H98 . . . E 5 140.806 165.863 131.176 1 115 ? C5 H98 2001 A 1 HETATM 6 C C6 H98 . . . E 5 141.712 166.808 130.699 1 115 ? C6 H98 2001 A 1 HETATM 7 C C7 H98 . . . E 5 142.544 166.477 129.634 1 115 ? C7 H98 2001 A 1 HETATM 8 C C8 H98 . . . E 5 142.474 165.215 129.048 1 115 ? C8 H98 2001 A 1 HETATM 9 C C9 H98 . . . E 5 141.562 164.287 129.54 1 115 ? C9 H98 2001 A 1 HETATM 10 O O1 H98 . . . E 5 143.443 167.397 129.15 1 115 ? O1 H98 2001 A 1 HETATM 11 C C10 H98 . . . E 5 144.795 167.002 129.227 1 115 ? C10 H98 2001 A 1 HETATM 12 N N1 H98 . . . E 5 139.9 160.986 131.409 1 115 ? N1 H98 2001 A 1 HETATM 13 C C11 H98 . . . E 5 140.839 159.864 131.69 1 115 ? C11 H98 2001 A 1 HETATM 14 C C12 H98 . . . E 5 140.303 158.453 131.242 1 115 ? C12 H98 2001 A 1 HETATM 15 C C13 H98 . . . E 5 141.16 157.297 131.765 1 115 ? C13 H98 2001 A 1 HETATM 16 C C14 H98 . . . E 5 142.451 157.506 132.253 1 115 ? C14 H98 2001 A 1 HETATM 17 C C15 H98 . . . E 5 143.217 156.435 132.725 1 115 ? C15 H98 2001 A 1 HETATM 18 C C16 H98 . . . E 5 142.68 155.139 132.706 1 115 ? C16 H98 2001 A 1 HETATM 19 C C17 H98 . . . E 5 141.393 154.923 132.22 1 115 ? C17 H98 2001 A 1 HETATM 20 C C18 H98 . . . E 5 140.646 156 131.755 1 115 ? C18 H98 2001 A 1 HETATM 21 O O2 H98 . . . E 5 143.476 154.142 133.179 1 115 ? O2 H98 2001 A 1 HETATM 22 N N2 H98 . . . E 5 144.535 156.643 133.225 1 115 ? N2 H98 2001 A 1 HETATM 23 C C19 H98 . . . E 5 145.627 156.906 132.394 1 115 ? C19 H98 2001 A 1 HETATM 24 O O3 H98 . . . E 5 146.752 157.083 132.829 1 115 ? O3 H98 2001 A 1 HETATM 25 O O4 H98 . . . E 5 139.05 158.302 131.85 1 115 ? O4 H98 2001 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #