data_6TKY
#
_model_server_result.job_id            RxWf4s3NOueNun8n75OYTg 
_model_server_result.datetime_utc      '2024-11-04 20:33:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tky 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2201}' 
#
_entry.id    6TKY 
#
_exptl.entry_id    6TKY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6TKY 
_cell.length_a            96.898 
_cell.length_b            96.898 
_cell.length_c            310.91 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TKY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    'P 4abw 2nw' 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,H,J 1 1 
B,D,F,G,I,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     6TKY 
_atom_sites.fract_transf_matrix[1][1]    0.01032 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01032 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003216 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 4 GOL D 1 201 1 GOL GOL . 
F 4 GOL A 1 2201 1 GOL GOL . 
G 4 GOL A 1 2202 1 GOL GOL . 
H 5 HOH B 1 2201 193 HOH HOH . 
H 5 HOH B 2 2202 64 HOH HOH . 
H 5 HOH B 3 2203 16 HOH HOH . 
H 5 HOH B 4 2204 167 HOH HOH . 
H 5 HOH B 5 2205 53 HOH HOH . 
H 5 HOH B 6 2206 40 HOH HOH . 
H 5 HOH B 7 2207 51 HOH HOH . 
H 5 HOH B 8 2208 32 HOH HOH . 
H 5 HOH B 9 2209 121 HOH HOH . 
H 5 HOH B 10 2210 67 HOH HOH . 
H 5 HOH B 11 2211 201 HOH HOH . 
H 5 HOH B 12 2212 27 HOH HOH . 
H 5 HOH B 13 2213 141 HOH HOH . 
H 5 HOH B 14 2214 60 HOH HOH . 
H 5 HOH B 15 2215 63 HOH HOH . 
H 5 HOH B 16 2216 34 HOH HOH . 
H 5 HOH B 17 2217 84 HOH HOH . 
H 5 HOH B 18 2218 103 HOH HOH . 
H 5 HOH B 19 2219 132 HOH HOH . 
H 5 HOH B 20 2220 68 HOH HOH . 
H 5 HOH B 21 2221 214 HOH HOH . 
H 5 HOH B 22 2222 212 HOH HOH . 
H 5 HOH B 23 2223 9 HOH HOH . 
H 5 HOH B 24 2224 66 HOH HOH . 
H 5 HOH B 25 2225 204 HOH HOH . 
H 5 HOH B 26 2226 213 HOH HOH . 
H 5 HOH B 27 2227 113 HOH HOH . 
H 5 HOH B 28 2228 38 HOH HOH . 
H 5 HOH B 29 2229 10 HOH HOH . 
H 5 HOH B 30 2230 7 HOH HOH . 
H 5 HOH B 31 2231 54 HOH HOH . 
H 5 HOH B 32 2232 216 HOH HOH . 
H 5 HOH B 33 2233 102 HOH HOH . 
H 5 HOH B 34 2234 93 HOH HOH . 
H 5 HOH B 35 2235 20 HOH HOH . 
H 5 HOH B 36 2236 98 HOH HOH . 
H 5 HOH B 37 2237 55 HOH HOH . 
H 5 HOH B 38 2238 162 HOH HOH . 
H 5 HOH B 39 2239 31 HOH HOH . 
H 5 HOH B 40 2240 138 HOH HOH . 
H 5 HOH B 41 2241 109 HOH HOH . 
H 5 HOH B 42 2242 159 HOH HOH . 
H 5 HOH B 43 2243 18 HOH HOH . 
H 5 HOH B 44 2244 220 HOH HOH . 
H 5 HOH B 45 2245 69 HOH HOH . 
H 5 HOH B 46 2246 6 HOH HOH . 
H 5 HOH B 47 2247 194 HOH HOH . 
H 5 HOH B 48 2248 11 HOH HOH . 
H 5 HOH B 49 2249 111 HOH HOH . 
H 5 HOH B 50 2250 127 HOH HOH . 
H 5 HOH B 51 2251 153 HOH HOH . 
H 5 HOH B 52 2252 186 HOH HOH . 
H 5 HOH B 53 2253 89 HOH HOH . 
H 5 HOH B 54 2254 198 HOH HOH . 
H 5 HOH B 55 2255 190 HOH HOH . 
H 5 HOH B 56 2256 156 HOH HOH . 
H 5 HOH B 57 2257 149 HOH HOH . 
H 5 HOH B 58 2258 135 HOH HOH . 
H 5 HOH B 59 2259 234 HOH HOH . 
H 5 HOH B 60 2260 146 HOH HOH . 
H 5 HOH B 61 2261 217 HOH HOH . 
H 5 HOH B 62 2262 126 HOH HOH . 
H 5 HOH B 63 2263 90 HOH HOH . 
H 5 HOH B 64 2264 112 HOH HOH . 
H 5 HOH B 65 2265 119 HOH HOH . 
H 5 HOH B 66 2266 83 HOH HOH . 
H 5 HOH B 67 2267 5 HOH HOH . 
H 5 HOH B 68 2268 123 HOH HOH . 
H 5 HOH B 69 2269 17 HOH HOH . 
H 5 HOH B 70 2270 137 HOH HOH . 
H 5 HOH B 71 2271 92 HOH HOH . 
H 5 HOH B 72 2272 157 HOH HOH . 
H 5 HOH B 73 2273 150 HOH HOH . 
H 5 HOH B 74 2274 118 HOH HOH . 
H 5 HOH B 75 2275 229 HOH HOH . 
H 5 HOH B 76 2276 12 HOH HOH . 
H 5 HOH B 77 2277 192 HOH HOH . 
H 5 HOH B 78 2278 178 HOH HOH . 
H 5 HOH B 79 2279 223 HOH HOH . 
H 5 HOH B 80 2280 15 HOH HOH . 
H 5 HOH B 81 2281 205 HOH HOH . 
H 5 HOH B 82 2282 37 HOH HOH . 
H 5 HOH B 83 2283 235 HOH HOH . 
H 5 HOH B 84 2284 197 HOH HOH . 
H 5 HOH B 85 2285 191 HOH HOH . 
H 5 HOH B 86 2286 176 HOH HOH . 
H 5 HOH B 87 2287 44 HOH HOH . 
H 5 HOH B 88 2288 80 HOH HOH . 
H 5 HOH B 89 2289 175 HOH HOH . 
H 5 HOH B 90 2290 233 HOH HOH . 
H 5 HOH B 91 2291 203 HOH HOH . 
H 5 HOH B 92 2292 188 HOH HOH . 
H 5 HOH B 93 2293 225 HOH HOH . 
H 5 HOH B 94 2294 144 HOH HOH . 
H 5 HOH B 95 2295 195 HOH HOH . 
H 5 HOH B 96 2296 163 HOH HOH . 
H 5 HOH B 97 2297 202 HOH HOH . 
I 5 HOH C 1 201 196 HOH HOH . 
I 5 HOH C 2 202 59 HOH HOH . 
I 5 HOH C 3 203 231 HOH HOH . 
I 5 HOH C 4 204 172 HOH HOH . 
I 5 HOH C 5 205 200 HOH HOH . 
I 5 HOH C 6 206 155 HOH HOH . 
I 5 HOH C 7 207 184 HOH HOH . 
I 5 HOH C 8 208 154 HOH HOH . 
I 5 HOH C 9 209 79 HOH HOH . 
I 5 HOH C 10 210 49 HOH HOH . 
I 5 HOH C 11 211 35 HOH HOH . 
I 5 HOH C 12 212 164 HOH HOH . 
I 5 HOH C 13 213 95 HOH HOH . 
I 5 HOH C 14 214 228 HOH HOH . 
I 5 HOH C 15 215 105 HOH HOH . 
I 5 HOH C 16 216 21 HOH HOH . 
I 5 HOH C 17 217 152 HOH HOH . 
I 5 HOH C 18 218 101 HOH HOH . 
I 5 HOH C 19 219 131 HOH HOH . 
I 5 HOH C 20 220 206 HOH HOH . 
I 5 HOH C 21 221 124 HOH HOH . 
I 5 HOH C 22 222 125 HOH HOH . 
I 5 HOH C 23 223 8 HOH HOH . 
I 5 HOH C 24 224 28 HOH HOH . 
I 5 HOH C 25 225 96 HOH HOH . 
I 5 HOH C 26 226 41 HOH HOH . 
I 5 HOH C 27 227 165 HOH HOH . 
I 5 HOH C 28 228 52 HOH HOH . 
I 5 HOH C 29 229 108 HOH HOH . 
I 5 HOH C 30 230 58 HOH HOH . 
I 5 HOH C 31 231 85 HOH HOH . 
J 5 HOH D 1 301 208 HOH HOH . 
J 5 HOH D 2 302 221 HOH HOH . 
J 5 HOH D 3 303 160 HOH HOH . 
J 5 HOH D 4 304 148 HOH HOH . 
J 5 HOH D 5 305 2 HOH HOH . 
J 5 HOH D 6 306 3 HOH HOH . 
J 5 HOH D 7 307 74 HOH HOH . 
J 5 HOH D 8 308 129 HOH HOH . 
J 5 HOH D 9 309 107 HOH HOH . 
J 5 HOH D 10 310 86 HOH HOH . 
J 5 HOH D 11 311 210 HOH HOH . 
J 5 HOH D 12 312 142 HOH HOH . 
J 5 HOH D 13 313 48 HOH HOH . 
J 5 HOH D 14 314 168 HOH HOH . 
J 5 HOH D 15 315 50 HOH HOH . 
J 5 HOH D 16 316 133 HOH HOH . 
J 5 HOH D 17 317 215 HOH HOH . 
J 5 HOH D 18 318 110 HOH HOH . 
J 5 HOH D 19 319 4 HOH HOH . 
J 5 HOH D 20 320 75 HOH HOH . 
J 5 HOH D 21 321 219 HOH HOH . 
J 5 HOH D 22 322 177 HOH HOH . 
J 5 HOH D 23 323 56 HOH HOH . 
J 5 HOH D 24 324 23 HOH HOH . 
J 5 HOH D 25 325 76 HOH HOH . 
J 5 HOH D 26 326 115 HOH HOH . 
J 5 HOH D 27 327 97 HOH HOH . 
J 5 HOH D 28 328 158 HOH HOH . 
J 5 HOH D 29 329 161 HOH HOH . 
K 5 HOH A 1 2301 189 HOH HOH . 
K 5 HOH A 2 2302 179 HOH HOH . 
K 5 HOH A 3 2303 94 HOH HOH . 
K 5 HOH A 4 2304 43 HOH HOH . 
K 5 HOH A 5 2305 134 HOH HOH . 
K 5 HOH A 6 2306 139 HOH HOH . 
K 5 HOH A 7 2307 227 HOH HOH . 
K 5 HOH A 8 2308 71 HOH HOH . 
K 5 HOH A 9 2309 218 HOH HOH . 
K 5 HOH A 10 2310 122 HOH HOH . 
K 5 HOH A 11 2311 91 HOH HOH . 
K 5 HOH A 12 2312 116 HOH HOH . 
K 5 HOH A 13 2313 183 HOH HOH . 
K 5 HOH A 14 2314 24 HOH HOH . 
K 5 HOH A 15 2315 13 HOH HOH . 
K 5 HOH A 16 2316 46 HOH HOH . 
K 5 HOH A 17 2317 170 HOH HOH . 
K 5 HOH A 18 2318 65 HOH HOH . 
K 5 HOH A 19 2319 104 HOH HOH . 
K 5 HOH A 20 2320 140 HOH HOH . 
K 5 HOH A 21 2321 100 HOH HOH . 
K 5 HOH A 22 2322 145 HOH HOH . 
K 5 HOH A 23 2323 78 HOH HOH . 
K 5 HOH A 24 2324 57 HOH HOH . 
K 5 HOH A 25 2325 33 HOH HOH . 
K 5 HOH A 26 2326 82 HOH HOH . 
K 5 HOH A 27 2327 61 HOH HOH . 
K 5 HOH A 28 2328 171 HOH HOH . 
K 5 HOH A 29 2329 87 HOH HOH . 
K 5 HOH A 30 2330 45 HOH HOH . 
K 5 HOH A 31 2331 117 HOH HOH . 
K 5 HOH A 32 2332 120 HOH HOH . 
K 5 HOH A 33 2333 1 HOH HOH . 
K 5 HOH A 34 2334 209 HOH HOH . 
K 5 HOH A 35 2335 29 HOH HOH . 
K 5 HOH A 36 2336 77 HOH HOH . 
K 5 HOH A 37 2337 81 HOH HOH . 
K 5 HOH A 38 2338 99 HOH HOH . 
K 5 HOH A 39 2339 114 HOH HOH . 
K 5 HOH A 40 2340 187 HOH HOH . 
K 5 HOH A 41 2341 42 HOH HOH . 
K 5 HOH A 42 2342 147 HOH HOH . 
K 5 HOH A 43 2343 106 HOH HOH . 
K 5 HOH A 44 2344 181 HOH HOH . 
K 5 HOH A 45 2345 25 HOH HOH . 
K 5 HOH A 46 2346 136 HOH HOH . 
K 5 HOH A 47 2347 73 HOH HOH . 
K 5 HOH A 48 2348 72 HOH HOH . 
K 5 HOH A 49 2349 88 HOH HOH . 
K 5 HOH A 50 2350 22 HOH HOH . 
K 5 HOH A 51 2351 185 HOH HOH . 
K 5 HOH A 52 2352 36 HOH HOH . 
K 5 HOH A 53 2353 26 HOH HOH . 
K 5 HOH A 54 2354 222 HOH HOH . 
K 5 HOH A 55 2355 174 HOH HOH . 
K 5 HOH A 56 2356 180 HOH HOH . 
K 5 HOH A 57 2357 14 HOH HOH . 
K 5 HOH A 58 2358 230 HOH HOH . 
K 5 HOH A 59 2359 151 HOH HOH . 
K 5 HOH A 60 2360 62 HOH HOH . 
K 5 HOH A 61 2361 19 HOH HOH . 
K 5 HOH A 62 2362 70 HOH HOH . 
K 5 HOH A 63 2363 30 HOH HOH . 
K 5 HOH A 64 2364 207 HOH HOH . 
K 5 HOH A 65 2365 173 HOH HOH . 
K 5 HOH A 66 2366 169 HOH HOH . 
K 5 HOH A 67 2367 199 HOH HOH . 
K 5 HOH A 68 2368 143 HOH HOH . 
K 5 HOH A 69 2369 130 HOH HOH . 
K 5 HOH A 70 2370 182 HOH HOH . 
K 5 HOH A 71 2371 226 HOH HOH . 
K 5 HOH A 72 2372 39 HOH HOH . 
K 5 HOH A 73 2373 224 HOH HOH . 
K 5 HOH A 74 2374 232 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 -5.22 -46.748 11.551 1 56.6 ? C1 GOL 2201 A 1 
HETATM 2 O O1 GOL . . . F 4 -6.132 -45.768 11.191 1 57.06 ? O1 GOL 2201 A 1 
HETATM 3 C C2 GOL . . . F 4 -4.739 -47.403 10.234 1 59.69 ? C2 GOL 2201 A 1 
HETATM 4 O O2 GOL . . . F 4 -5.539 -47.037 9.151 1 56.76 ? O2 GOL 2201 A 1 
HETATM 5 C C3 GOL . . . F 4 -4.761 -48.943 10.516 1 68.07 ? C3 GOL 2201 A 1 
HETATM 6 O O3 GOL . . . F 4 -3.622 -49.264 11.28 1 75.14 ? O3 GOL 2201 A 1 
#
_model_server_stats.io_time_ms              117 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#