data_6TL4 # _model_server_result.job_id KZU39SiVMw3UaOZXw-GM3A _model_server_result.datetime_utc '2025-07-05 16:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 6TL4 # _exptl.entry_id 6TL4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 588.694 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHYCOCYANOBILIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TL4 _cell.length_a 102.269 _cell.length_b 102.269 _cell.length_c 222.918 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 271 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 353 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id CAC _struct_conn.ptnr2_label_comp_id CYC _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYC _struct_conn.ptnr2_auth_seq_id 700 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.764 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C33 H40 N4 O6' _chem_comp.formula_weight 588.694 _chem_comp.id CYC _chem_comp.mon_nstd_flag . _chem_comp.name PHYCOCYANOBILIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A CYC doub 70 z n CHA C4D CYC sing 71 n n CHA HHA CYC sing 72 n n NA C1A CYC sing 73 n n NA C4A CYC doub 74 n n C1A C2A CYC sing 75 n n C2A C3A CYC doub 76 n n C2A CAA CYC sing 77 n n C3A C4A CYC sing 78 n n C3A CMA CYC sing 79 n n C4A CHB CYC sing 80 n n CMA HMA1 CYC sing 81 n n CMA HMA2 CYC sing 82 n n CMA HMA3 CYC sing 83 n n CAA CBA CYC sing 84 n n CAA HAA1 CYC sing 85 n n CAA HAA2 CYC sing 86 n n CBA CGA CYC sing 87 n n CBA HBA1 CYC sing 88 n n CBA HBA2 CYC sing 89 n n CGA O1A CYC doub 90 n n CGA O2A CYC sing 91 n n O2A H2A CYC sing 92 n n CHB C1B CYC doub 93 z n CHB HHB CYC sing 94 n n NB C1B CYC sing 95 n n NB C4B CYC sing 96 n n NB HB CYC sing 97 n n C1B C2B CYC sing 98 n n C2B C3B CYC doub 99 n n C2B CMB CYC sing 100 n n C3B C4B CYC sing 101 n n C3B CAB CYC sing 102 n n C4B OB CYC doub 103 n n CMB HMB1 CYC sing 104 n n CMB HMB2 CYC sing 105 n n CMB HMB3 CYC sing 106 n n CAB CBB CYC sing 107 n n CAB HAB1 CYC sing 108 n n CAB HAB2 CYC sing 109 n n CBB HBB1 CYC sing 110 n n CBB HBB2 CYC sing 111 n n CBB HBB3 CYC sing 112 n n NC C1C CYC sing 113 n n NC C4C CYC sing 114 n n NC HC CYC sing 115 n n C1C C2C CYC sing 116 n n C1C OC CYC doub 117 n n C2C C3C CYC sing 118 n n C2C CMC CYC sing 119 n n C2C H2C CYC sing 120 n n C3C C4C CYC sing 121 n n C3C CAC CYC sing 122 n n C3C H3C CYC sing 123 n n C4C CHD CYC doub 124 z n CMC HMC1 CYC sing 125 n n CMC HMC2 CYC sing 126 n n CMC HMC3 CYC sing 127 n n CAC CBC CYC sing 128 n n CAC HAC1 CYC sing 129 n n CAC HAC2 CYC sing 130 n n CBC HBC1 CYC sing 131 n n CBC HBC2 CYC sing 132 n n CBC HBC3 CYC sing 133 n n CHD C1D CYC sing 134 n n CHD HHD CYC sing 135 n n ND C1D CYC sing 136 n y ND C4D CYC sing 137 n y ND HD CYC sing 138 n n C1D C2D CYC doub 139 n y C2D C3D CYC sing 140 n y C2D CMD CYC sing 141 n n C3D C4D CYC doub 142 n y C3D CAD CYC sing 143 n n CMD HMD1 CYC sing 144 n n CMD HMD2 CYC sing 145 n n CMD HMD3 CYC sing 146 n n CAD CBD CYC sing 147 n n CAD HAD1 CYC sing 148 n n CAD HAD2 CYC sing 149 n n CBD CGD CYC sing 150 n n CBD HBD1 CYC sing 151 n n CBD HBD2 CYC sing 152 n n CGD O1D CYC doub 153 n n CGD O2D CYC sing 154 n n O2D H2D CYC sing 155 n n # _atom_sites.entry_id 6TL4 _atom_sites.fract_transf_matrix[1][1] 0.009778 _atom_sites.fract_transf_matrix[1][2] 0.005645 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CYC A 1 700 700 CYC CYC . C 3 HOH A 1 801 701 HOH HOH . C 3 HOH A 2 802 702 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA CYC . . . B 2 -22.266 -25.664 13.993 1 102.52 ? CHA CYC 700 A 1 HETATM 2 N NA CYC . . . B 2 -23.666 -27.44 13.022 1 98.51 ? NA CYC 700 A 1 HETATM 3 C C1A CYC . . . B 2 -23.28 -26.571 13.967 1 99.65 ? C1A CYC 700 A 1 HETATM 4 C C2A CYC . . . B 2 -24.113 -26.737 14.99 1 99.36 ? C2A CYC 700 A 1 HETATM 5 C C3A CYC . . . B 2 -24.989 -27.692 14.699 1 96.39 ? C3A CYC 700 A 1 HETATM 6 C C4A CYC . . . B 2 -24.745 -28.123 13.467 1 96.35 ? C4A CYC 700 A 1 HETATM 7 C CMA CYC . . . B 2 -26.088 -28.144 15.654 1 96.59 ? CMA CYC 700 A 1 HETATM 8 C CAA CYC . . . B 2 -24.076 -25.968 16.325 1 102.63 ? CAA CYC 700 A 1 HETATM 9 C CBA CYC . . . B 2 -24.393 -24.482 16.126 1 105.06 ? CBA CYC 700 A 1 HETATM 10 C CGA CYC . . . B 2 -25.589 -24.042 16.951 1 102.51 ? CGA CYC 700 A 1 HETATM 11 O O1A CYC . . . B 2 -25.345 -23.537 18.051 1 105.14 ? O1A CYC 700 A 1 HETATM 12 O O2A CYC . . . B 2 -26.718 -24.185 16.448 1 101.38 ? O2A CYC 700 A 1 HETATM 13 C CHB CYC . . . B 2 -25.329 -29.105 12.737 1 97.99 ? CHB CYC 700 A 1 HETATM 14 N NB CYC . . . B 2 -27.716 -28.758 13.075 1 98.34 ? NB CYC 700 A 1 HETATM 15 C C1B CYC . . . B 2 -26.628 -29.473 12.757 1 97.14 ? C1B CYC 700 A 1 HETATM 16 C C2B CYC . . . B 2 -27.024 -30.689 12.378 1 99.76 ? C2B CYC 700 A 1 HETATM 17 C C3B CYC . . . B 2 -28.334 -30.767 12.48 1 101.85 ? C3B CYC 700 A 1 HETATM 18 C C4B CYC . . . B 2 -28.762 -29.579 12.904 1 100.74 ? C4B CYC 700 A 1 HETATM 19 C CMB CYC . . . B 2 -26.123 -31.833 11.916 1 100.4 ? CMB CYC 700 A 1 HETATM 20 C CAB CYC . . . B 2 -29.133 -32.018 12.125 1 111.06 ? CAB CYC 700 A 1 HETATM 21 C CBB CYC . . . B 2 -29.996 -32.486 13.285 1 109.77 ? CBB CYC 700 A 1 HETATM 22 O OB CYC . . . B 2 -29.935 -29.273 13.114 1 104.1 ? OB CYC 700 A 1 HETATM 23 N NC CYC . . . B 2 -20.844 -26.856 8.961 1 109.88 ? NC CYC 700 A 1 HETATM 24 C C1C CYC . . . B 2 -20.913 -27.429 7.755 1 112.85 ? C1C CYC 700 A 1 HETATM 25 C C2C CYC . . . B 2 -19.74 -27.071 6.853 1 113.13 ? C2C CYC 700 A 1 HETATM 26 C C3C CYC . . . B 2 -18.916 -26.168 7.762 1 112.97 ? C3C CYC 700 A 1 HETATM 27 C C4C CYC . . . B 2 -19.753 -26.093 9.058 1 111.45 ? C4C CYC 700 A 1 HETATM 28 C CMC CYC . . . B 2 -18.961 -28.351 6.578 1 116.06 ? CMC CYC 700 A 1 HETATM 29 C CAC CYC . . . B 2 -18.74 -24.772 7.151 1 118.15 ? CAC CYC 700 A 1 HETATM 30 C CBC CYC . . . B 2 -18.042 -24.895 5.805 1 122.41 ? CBC CYC 700 A 1 HETATM 31 O OC CYC . . . B 2 -21.821 -28.184 7.417 1 110.97 ? OC CYC 700 A 1 HETATM 32 C CHD CYC . . . B 2 -19.351 -25.374 10.129 1 111.64 ? CHD CYC 700 A 1 HETATM 33 N ND CYC . . . B 2 -21.08 -25.941 11.817 1 104.89 ? ND CYC 700 A 1 HETATM 34 C C1D CYC . . . B 2 -20.024 -25.266 11.301 1 105.25 ? C1D CYC 700 A 1 HETATM 35 C C2D CYC . . . B 2 -19.643 -24.351 12.186 1 106.11 ? C2D CYC 700 A 1 HETATM 36 C C3D CYC . . . B 2 -20.432 -24.427 13.237 1 104.38 ? C3D CYC 700 A 1 HETATM 37 C C4D CYC . . . B 2 -21.332 -25.396 13.036 1 103.07 ? C4D CYC 700 A 1 HETATM 38 C CMD CYC . . . B 2 -18.482 -23.363 12.02 1 109.01 ? CMD CYC 700 A 1 HETATM 39 C CAD CYC . . . B 2 -20.302 -23.524 14.473 1 103.57 ? CAD CYC 700 A 1 HETATM 40 C CBD CYC . . . B 2 -21.349 -22.419 14.37 1 103.35 ? CBD CYC 700 A 1 HETATM 41 C CGD CYC . . . B 2 -20.978 -21.201 15.217 1 111.96 ? CGD CYC 700 A 1 HETATM 42 O O1D CYC . . . B 2 -20.757 -21.384 16.437 1 108.96 ? O1D CYC 700 A 1 HETATM 43 O O2D CYC . . . B 2 -21.033 -20.089 14.653 1 115.81 ? O2D CYC 700 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #