data_6TL9 # _model_server_result.job_id SudYBjUuHYetFdC2x5CAcw _model_server_result.datetime_utc '2024-12-26 13:25:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":301}' # _entry.id 6TL9 # _exptl.entry_id 6TL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.99 _cell.angle_gamma 90 _cell.entry_id 6TL9 _cell.length_a 150.816 _cell.length_b 62.211 _cell.length_c 116.331 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,N,O,P,Q 1 1 E,F,G,H,L,M,R,S,T,U 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 144 1_555 A SG CYS 17 A CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 34 A CYS 172 1_555 A SG CYS 126 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 105 A CYS 243 1_555 A SG CYS 118 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 B SG CYS 6 B CYS 144 1_555 B SG CYS 17 B CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 B SG CYS 34 B CYS 172 1_555 B SG CYS 126 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 B SG CYS 105 B CYS 243 1_555 B SG CYS 118 B CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 6 C CYS 144 1_555 C SG CYS 17 C CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 34 C CYS 172 1_555 C SG CYS 126 C CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf9 C SG CYS 105 C CYS 243 1_555 C SG CYS 118 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 D SG CYS 6 D CYS 144 1_555 D SG CYS 17 D CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf11 D SG CYS 34 D CYS 172 1_555 D SG CYS 126 D CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf12 D SG CYS 105 D CYS 243 1_555 D SG CYS 118 D CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf13 E SG CYS 6 E CYS 144 1_555 E SG CYS 17 E CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 E SG CYS 34 E CYS 172 1_555 E SG CYS 126 E CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 E SG CYS 105 E CYS 243 1_555 E SG CYS 118 E CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf16 F SG CYS 6 F CYS 144 1_555 F SG CYS 17 F CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 F SG CYS 34 F CYS 172 1_555 F SG CYS 126 F CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf18 F SG CYS 105 F CYS 243 1_555 F SG CYS 118 F CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 G SG CYS 6 G CYS 144 1_555 G SG CYS 17 G CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf20 G SG CYS 34 G CYS 172 1_555 G SG CYS 126 G CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf21 G SG CYS 105 G CYS 243 1_555 G SG CYS 118 G CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf22 H SG CYS 6 H CYS 144 1_555 H SG CYS 17 H CYS 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf23 H SG CYS 34 H CYS 172 1_555 H SG CYS 126 H CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf24 H SG CYS 105 H CYS 243 1_555 H SG CYS 118 H CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6TL9 _atom_sites.fract_transf_matrix[1][1] 0.006631 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000462 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL B 1 301 1 GOL GOL . J 3 NJT B 1 302 1 NJT LIG . K 3 NJT B 1 303 2 NJT LIG . L 3 NJT F 1 301 3 NJT LIG . M 3 NJT F 1 302 4 NJT LIG . N 4 HOH A 1 301 96 HOH HOH . N 4 HOH A 2 302 24 HOH HOH . N 4 HOH A 3 303 42 HOH HOH . N 4 HOH A 4 304 118 HOH HOH . N 4 HOH A 5 305 211 HOH HOH . N 4 HOH A 6 306 41 HOH HOH . N 4 HOH A 7 307 26 HOH HOH . N 4 HOH A 8 308 195 HOH HOH . N 4 HOH A 9 309 92 HOH HOH . N 4 HOH A 10 310 154 HOH HOH . N 4 HOH A 11 311 31 HOH HOH . N 4 HOH A 12 312 215 HOH HOH . N 4 HOH A 13 313 1 HOH HOH . N 4 HOH A 14 314 76 HOH HOH . N 4 HOH A 15 315 126 HOH HOH . N 4 HOH A 16 316 7 HOH HOH . N 4 HOH A 17 317 88 HOH HOH . N 4 HOH A 18 318 192 HOH HOH . N 4 HOH A 19 319 193 HOH HOH . N 4 HOH A 20 320 206 HOH HOH . N 4 HOH A 21 321 119 HOH HOH . N 4 HOH A 22 322 159 HOH HOH . N 4 HOH A 23 323 104 HOH HOH . N 4 HOH A 24 324 123 HOH HOH . N 4 HOH A 25 325 165 HOH HOH . N 4 HOH A 26 326 108 HOH HOH . O 4 HOH B 1 401 22 HOH HOH . O 4 HOH B 2 402 207 HOH HOH . O 4 HOH B 3 403 196 HOH HOH . O 4 HOH B 4 404 145 HOH HOH . O 4 HOH B 5 405 156 HOH HOH . O 4 HOH B 6 406 153 HOH HOH . O 4 HOH B 7 407 60 HOH HOH . O 4 HOH B 8 408 151 HOH HOH . O 4 HOH B 9 409 80 HOH HOH . O 4 HOH B 10 410 175 HOH HOH . O 4 HOH B 11 411 134 HOH HOH . O 4 HOH B 12 412 2 HOH HOH . O 4 HOH B 13 413 125 HOH HOH . O 4 HOH B 14 414 110 HOH HOH . O 4 HOH B 15 415 10 HOH HOH . O 4 HOH B 16 416 176 HOH HOH . O 4 HOH B 17 417 136 HOH HOH . O 4 HOH B 18 418 218 HOH HOH . O 4 HOH B 19 419 19 HOH HOH . O 4 HOH B 20 420 198 HOH HOH . O 4 HOH B 21 421 47 HOH HOH . P 4 HOH C 1 301 111 HOH HOH . P 4 HOH C 2 302 54 HOH HOH . P 4 HOH C 3 303 66 HOH HOH . P 4 HOH C 4 304 209 HOH HOH . P 4 HOH C 5 305 14 HOH HOH . P 4 HOH C 6 306 44 HOH HOH . P 4 HOH C 7 307 217 HOH HOH . P 4 HOH C 8 308 18 HOH HOH . P 4 HOH C 9 309 68 HOH HOH . P 4 HOH C 10 310 103 HOH HOH . P 4 HOH C 11 311 158 HOH HOH . P 4 HOH C 12 312 190 HOH HOH . P 4 HOH C 13 313 16 HOH HOH . P 4 HOH C 14 314 81 HOH HOH . P 4 HOH C 15 315 163 HOH HOH . P 4 HOH C 16 316 64 HOH HOH . P 4 HOH C 17 317 164 HOH HOH . P 4 HOH C 18 318 179 HOH HOH . P 4 HOH C 19 319 37 HOH HOH . P 4 HOH C 20 320 8 HOH HOH . P 4 HOH C 21 321 166 HOH HOH . P 4 HOH C 22 322 40 HOH HOH . P 4 HOH C 23 323 185 HOH HOH . P 4 HOH C 24 324 63 HOH HOH . P 4 HOH C 25 325 128 HOH HOH . P 4 HOH C 26 326 130 HOH HOH . P 4 HOH C 27 327 113 HOH HOH . P 4 HOH C 28 328 99 HOH HOH . P 4 HOH C 29 329 161 HOH HOH . P 4 HOH C 30 330 49 HOH HOH . P 4 HOH C 31 331 138 HOH HOH . P 4 HOH C 32 332 87 HOH HOH . P 4 HOH C 33 333 58 HOH HOH . P 4 HOH C 34 334 197 HOH HOH . P 4 HOH C 35 335 140 HOH HOH . P 4 HOH C 36 336 39 HOH HOH . P 4 HOH C 37 337 114 HOH HOH . P 4 HOH C 38 338 122 HOH HOH . P 4 HOH C 39 339 101 HOH HOH . Q 4 HOH D 1 301 199 HOH HOH . Q 4 HOH D 2 302 155 HOH HOH . Q 4 HOH D 3 303 186 HOH HOH . Q 4 HOH D 4 304 94 HOH HOH . Q 4 HOH D 5 305 27 HOH HOH . Q 4 HOH D 6 306 62 HOH HOH . Q 4 HOH D 7 307 51 HOH HOH . Q 4 HOH D 8 308 46 HOH HOH . Q 4 HOH D 9 309 191 HOH HOH . Q 4 HOH D 10 310 182 HOH HOH . Q 4 HOH D 11 311 91 HOH HOH . Q 4 HOH D 12 312 74 HOH HOH . Q 4 HOH D 13 313 147 HOH HOH . Q 4 HOH D 14 314 146 HOH HOH . Q 4 HOH D 15 315 86 HOH HOH . Q 4 HOH D 16 316 152 HOH HOH . Q 4 HOH D 17 317 203 HOH HOH . R 4 HOH E 1 301 53 HOH HOH . R 4 HOH E 2 302 132 HOH HOH . R 4 HOH E 3 303 201 HOH HOH . R 4 HOH E 4 304 141 HOH HOH . R 4 HOH E 5 305 5 HOH HOH . R 4 HOH E 6 306 149 HOH HOH . R 4 HOH E 7 307 25 HOH HOH . R 4 HOH E 8 308 120 HOH HOH . R 4 HOH E 9 309 160 HOH HOH . R 4 HOH E 10 310 13 HOH HOH . R 4 HOH E 11 311 121 HOH HOH . R 4 HOH E 12 312 105 HOH HOH . R 4 HOH E 13 313 117 HOH HOH . S 4 HOH F 1 401 157 HOH HOH . S 4 HOH F 2 402 144 HOH HOH . S 4 HOH F 3 403 65 HOH HOH . S 4 HOH F 4 404 180 HOH HOH . S 4 HOH F 5 405 43 HOH HOH . S 4 HOH F 6 406 172 HOH HOH . S 4 HOH F 7 407 194 HOH HOH . S 4 HOH F 8 408 20 HOH HOH . S 4 HOH F 9 409 32 HOH HOH . S 4 HOH F 10 410 29 HOH HOH . S 4 HOH F 11 411 12 HOH HOH . S 4 HOH F 12 412 150 HOH HOH . S 4 HOH F 13 413 73 HOH HOH . S 4 HOH F 14 414 77 HOH HOH . S 4 HOH F 15 415 28 HOH HOH . S 4 HOH F 16 416 71 HOH HOH . S 4 HOH F 17 417 72 HOH HOH . S 4 HOH F 18 418 173 HOH HOH . S 4 HOH F 19 419 216 HOH HOH . S 4 HOH F 20 420 107 HOH HOH . S 4 HOH F 21 421 34 HOH HOH . S 4 HOH F 22 422 30 HOH HOH . S 4 HOH F 23 423 57 HOH HOH . S 4 HOH F 24 424 52 HOH HOH . S 4 HOH F 25 425 184 HOH HOH . S 4 HOH F 26 426 38 HOH HOH . S 4 HOH F 27 427 181 HOH HOH . S 4 HOH F 28 428 106 HOH HOH . S 4 HOH F 29 429 116 HOH HOH . S 4 HOH F 30 430 127 HOH HOH . T 4 HOH G 1 301 15 HOH HOH . T 4 HOH G 2 302 170 HOH HOH . T 4 HOH G 3 303 135 HOH HOH . T 4 HOH G 4 304 75 HOH HOH . T 4 HOH G 5 305 129 HOH HOH . T 4 HOH G 6 306 55 HOH HOH . T 4 HOH G 7 307 11 HOH HOH . T 4 HOH G 8 308 36 HOH HOH . T 4 HOH G 9 309 82 HOH HOH . T 4 HOH G 10 310 4 HOH HOH . T 4 HOH G 11 311 48 HOH HOH . T 4 HOH G 12 312 3 HOH HOH . T 4 HOH G 13 313 78 HOH HOH . T 4 HOH G 14 314 59 HOH HOH . T 4 HOH G 15 315 85 HOH HOH . T 4 HOH G 16 316 61 HOH HOH . T 4 HOH G 17 317 89 HOH HOH . T 4 HOH G 18 318 100 HOH HOH . U 4 HOH H 1 301 212 HOH HOH . U 4 HOH H 2 302 205 HOH HOH . U 4 HOH H 3 303 200 HOH HOH . U 4 HOH H 4 304 95 HOH HOH . U 4 HOH H 5 305 50 HOH HOH . U 4 HOH H 6 306 115 HOH HOH . U 4 HOH H 7 307 33 HOH HOH . U 4 HOH H 8 308 112 HOH HOH . U 4 HOH H 9 309 6 HOH HOH . U 4 HOH H 10 310 137 HOH HOH . U 4 HOH H 11 311 21 HOH HOH . U 4 HOH H 12 312 69 HOH HOH . U 4 HOH H 13 313 9 HOH HOH . U 4 HOH H 14 314 210 HOH HOH . U 4 HOH H 15 315 131 HOH HOH . U 4 HOH H 16 316 214 HOH HOH . U 4 HOH H 17 317 187 HOH HOH . U 4 HOH H 18 318 56 HOH HOH . U 4 HOH H 19 319 171 HOH HOH . U 4 HOH H 20 320 167 HOH HOH . U 4 HOH H 21 321 84 HOH HOH . U 4 HOH H 22 322 93 HOH HOH . U 4 HOH H 23 323 142 HOH HOH . U 4 HOH H 24 324 188 HOH HOH . U 4 HOH H 25 325 97 HOH HOH . U 4 HOH H 26 326 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 2 6.104 -46.702 -52.409 1 54.31 ? C1 GOL 301 B 1 HETATM 2 O O1 GOL . . . I 2 6.653 -47.92 -51.908 1 54.36 ? O1 GOL 301 B 1 HETATM 3 C C2 GOL . . . I 2 5.637 -45.784 -51.301 1 54.04 ? C2 GOL 301 B 1 HETATM 4 O O2 GOL . . . I 2 4.438 -46.301 -50.704 1 53.63 ? O2 GOL 301 B 1 HETATM 5 C C3 GOL . . . I 2 5.367 -44.404 -51.858 1 54.08 ? C3 GOL 301 B 1 HETATM 6 O O3 GOL . . . I 2 6.577 -43.705 -52.123 1 54.09 ? O3 GOL 301 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 71 _model_server_stats.element_count 6 #