data_6TLF # _model_server_result.job_id 1Df5CL2-GEw87ZLxLzsXQQ _model_server_result.datetime_utc '2024-12-14 01:31:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tlf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 6TLF # _exptl.entry_id 6TLF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TLF _cell.length_a 63.294 _cell.length_b 100.896 _cell.length_c 157.017 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TLF _symmetry.cell_setting ? _symmetry.Int_Tables_number 24 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-y+1/2,z -1 0 0 0 -1 0 0 0 1 0 50.448 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 173 n n P O2P IMP sing 174 n n P O3P IMP sing 175 n n P O5' IMP sing 176 n n O2P HOP2 IMP sing 177 n n O3P HOP3 IMP sing 178 n n O5' C5' IMP sing 179 n n C5' C4' IMP sing 180 n n C5' "H5'1" IMP sing 181 n n C5' "H5'2" IMP sing 182 n n C4' O4' IMP sing 183 n n C4' C3' IMP sing 184 n n C4' H4' IMP sing 185 n n O4' C1' IMP sing 186 n n C3' O3' IMP sing 187 n n C3' C2' IMP sing 188 n n C3' H3' IMP sing 189 n n O3' HO3' IMP sing 190 n n C2' O2' IMP sing 191 n n C2' C1' IMP sing 192 n n C2' H2' IMP sing 193 n n O2' HO2' IMP sing 194 n n C1' N9 IMP sing 195 n n C1' H1' IMP sing 196 n n N9 C8 IMP sing 197 n y N9 C4 IMP sing 198 n y C8 N7 IMP doub 199 n y C8 H8 IMP sing 200 n n N7 C5 IMP sing 201 n y C5 C6 IMP sing 202 n n C5 C4 IMP doub 203 n y C6 O6 IMP doub 204 n n C6 N1 IMP sing 205 n n N1 C2 IMP sing 206 n n N1 HN1 IMP sing 207 n n C2 N3 IMP doub 208 n n C2 H2 IMP sing 209 n n N3 C4 IMP sing 210 n n # _atom_sites.entry_id 6TLF _atom_sites.fract_transf_matrix[1][1] 0.015799 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006369 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMP A 1 301 301 IMP IMP . C 3 SO4 A 1 302 1 SO4 SO4 . D 4 HOH A 1 401 17 HOH HOH . D 4 HOH A 2 402 16 HOH HOH . D 4 HOH A 3 403 4 HOH HOH . D 4 HOH A 4 404 6 HOH HOH . D 4 HOH A 5 405 19 HOH HOH . D 4 HOH A 6 406 7 HOH HOH . D 4 HOH A 7 407 13 HOH HOH . D 4 HOH A 8 408 3 HOH HOH . D 4 HOH A 9 409 1 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 15 HOH HOH . D 4 HOH A 12 412 18 HOH HOH . D 4 HOH A 13 413 14 HOH HOH . D 4 HOH A 14 414 8 HOH HOH . D 4 HOH A 15 415 24 HOH HOH . D 4 HOH A 16 416 12 HOH HOH . D 4 HOH A 17 417 23 HOH HOH . D 4 HOH A 18 418 25 HOH HOH . D 4 HOH A 19 419 21 HOH HOH . D 4 HOH A 20 420 26 HOH HOH . D 4 HOH A 21 421 22 HOH HOH . D 4 HOH A 22 422 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . B 2 -11.703 11.579 20.66 1 104.01 ? P IMP 301 A 1 HETATM 2 O O1P IMP . . . B 2 -12.343 11.99 19.359 1 109.35 ? O1P IMP 301 A 1 HETATM 3 O O2P IMP . . . B 2 -10.605 12.529 21.138 1 76.08 ? O2P IMP 301 A 1 HETATM 4 O O3P IMP . . . B 2 -11.313 10.107 20.652 1 79.06 ? O3P IMP 301 A 1 HETATM 5 O O5' IMP . . . B 2 -12.914 11.792 21.712 1 134.65 ? O5' IMP 301 A 1 HETATM 6 C C5' IMP . . . B 2 -12.664 12.499 22.958 1 165.54 ? C5' IMP 301 A 1 HETATM 7 C C4' IMP . . . B 2 -12.693 11.494 24.084 1 186.29 ? C4' IMP 301 A 1 HETATM 8 O O4' IMP . . . B 2 -11.67 10.492 23.851 1 192.56 ? O4' IMP 301 A 1 HETATM 9 C C3' IMP . . . B 2 -12.395 12.01 25.496 1 173.5 ? C3' IMP 301 A 1 HETATM 10 O O3' IMP . . . B 2 -13.55 12.589 26.092 1 164 ? O3' IMP 301 A 1 HETATM 11 C C2' IMP . . . B 2 -11.972 10.714 26.194 1 174.37 ? C2' IMP 301 A 1 HETATM 12 O O2' IMP . . . B 2 -13.068 9.914 26.589 1 143.94 ? O2' IMP 301 A 1 HETATM 13 C C1' IMP . . . B 2 -11.204 9.995 25.086 1 181.59 ? C1' IMP 301 A 1 HETATM 14 N N9 IMP . . . B 2 -9.747 10.11 25.141 1 174.32 ? N9 IMP 301 A 1 HETATM 15 C C8 IMP . . . B 2 -8.998 11.104 25.737 1 143.87 ? C8 IMP 301 A 1 HETATM 16 N N7 IMP . . . B 2 -7.706 10.908 25.618 1 157.28 ? N7 IMP 301 A 1 HETATM 17 C C5 IMP . . . B 2 -7.599 9.711 24.903 1 172.59 ? C5 IMP 301 A 1 HETATM 18 C C6 IMP . . . B 2 -6.444 8.984 24.468 1 162.16 ? C6 IMP 301 A 1 HETATM 19 O O6 IMP . . . B 2 -5.286 9.351 24.7 1 145.59 ? O6 IMP 301 A 1 HETATM 20 N N1 IMP . . . B 2 -6.744 7.821 23.773 1 163.1 ? N1 IMP 301 A 1 HETATM 21 C C2 IMP . . . B 2 -8.073 7.405 23.529 1 152.89 ? C2 IMP 301 A 1 HETATM 22 N N3 IMP . . . B 2 -9.141 8.06 23.918 1 156.85 ? N3 IMP 301 A 1 HETATM 23 C C4 IMP . . . B 2 -8.853 9.21 24.604 1 174.27 ? C4 IMP 301 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #