data_6TLZ # _model_server_result.job_id jhrImoQmpq8Egr-N9p2Z9g _model_server_result.datetime_utc '2025-08-31 19:32:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tlz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 6TLZ # _exptl.entry_id 6TLZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 309.27 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'N-acetyl-alpha-neuraminic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.12 _cell.angle_gamma 90 _cell.entry_id 6TLZ _cell.length_a 117.212 _cell.length_b 107.312 _cell.length_c 162.013 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TLZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C 1 1 B,D,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GAL BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 SIA GAL C2 O2 . O3 HO3 . sing 3 ? 3 2 1 GAL BGC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 1004 BGC 2 n C GAL 2 C 2 GAL A 1003 GAL 2 n C SIA 3 C 3 SIA A 1002 SIA 3 n D BGC 1 D 1 BGC B 1004 BGC 3 n D GAL 2 D 2 GAL B 1003 GAL # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 BGC . C BGC 1 1_555 C C1 GAL . C GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale2 C O3 GAL . C GAL 2 1_555 C C2 SIA . C SIA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale3 D O4 BGC . D BGC 1 1_555 D C1 GAL . D GAL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C11 H19 N O9' _chem_comp.formula_weight 309.27 _chem_comp.id SIA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-acetyl-alpha-neuraminic acid' _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms 'N-acetylneuraminic acid;sialic acid;alpha-sialic acid;O-SIALIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SIA sing 323 n n C1 O1A SIA doub 324 n n C1 O1B SIA sing 325 n n C2 C3 SIA sing 326 n n C2 O2 SIA sing 327 n n C2 O6 SIA sing 328 n n C3 C4 SIA sing 329 n n C3 H32 SIA sing 330 n n C3 H31 SIA sing 331 n n C4 C5 SIA sing 332 n n C4 O4 SIA sing 333 n n C4 H4 SIA sing 334 n n C5 C6 SIA sing 335 n n C5 N5 SIA sing 336 n n C5 H5 SIA sing 337 n n C6 C7 SIA sing 338 n n C6 O6 SIA sing 339 n n C6 H6 SIA sing 340 n n C7 C8 SIA sing 341 n n C7 O7 SIA sing 342 n n C7 H7 SIA sing 343 n n C8 C9 SIA sing 344 n n C8 O8 SIA sing 345 n n C8 H8 SIA sing 346 n n C9 O9 SIA sing 347 n n C9 H92 SIA sing 348 n n C9 H91 SIA sing 349 n n C10 C11 SIA sing 350 n n C10 N5 SIA sing 351 n n C10 O10 SIA doub 352 n n C11 H111 SIA sing 353 n n C11 H113 SIA sing 354 n n C11 H112 SIA sing 355 n n N5 HN5 SIA sing 356 n n O1B HO1B SIA sing 357 n n O2 HO2 SIA sing 358 n n O4 HO4 SIA sing 359 n n O7 HO7 SIA sing 360 n n O8 HO8 SIA sing 361 n n O9 HO9 SIA sing 362 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version SIA DNeup5Aca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 SIA 'N-acetyl-a-D-neuraminic acid' 'COMMON NAME' GMML 1 SIA a-D-Neup5Ac 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 SIA Neu5Ac 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6TLZ _atom_sites.fract_transf_matrix[1][1] 0.008532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000018 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009319 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006172 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id SIA _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1001 _pdbx_nonpoly_scheme.auth_seq_num 1002 _pdbx_nonpoly_scheme.pdb_mon_id SIA _pdbx_nonpoly_scheme.auth_mon_id SIA _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIA . . . E 4 -6.407 -36.966 15.619 1 245.92 ? C1 SIA 1001 B 1 HETATM 2 C C2 SIA . . . E 4 -6.568 -37.214 17.128 1 246.07 ? C2 SIA 1001 B 1 HETATM 3 C C3 SIA . . . E 4 -5.969 -38.64 17.242 1 246.45 ? C3 SIA 1001 B 1 HETATM 4 C C4 SIA . . . E 4 -5.856 -39.107 18.68 1 246.42 ? C4 SIA 1001 B 1 HETATM 5 C C5 SIA . . . E 4 -5.518 -37.932 19.584 1 245.89 ? C5 SIA 1001 B 1 HETATM 6 C C6 SIA . . . E 4 -4.743 -36.88 18.789 1 245.95 ? C6 SIA 1001 B 1 HETATM 7 C C7 SIA . . . E 4 -4.41 -35.708 19.694 1 245.73 ? C7 SIA 1001 B 1 HETATM 8 C C8 SIA . . . E 4 -5.514 -34.666 19.738 1 245.65 ? C8 SIA 1001 B 1 HETATM 9 C C9 SIA . . . E 4 -5.096 -33.371 20.402 1 245.62 ? C9 SIA 1001 B 1 HETATM 10 C C10 SIA . . . E 4 -4.99 -39.349 21.553 1 244.92 ? C10 SIA 1001 B 1 HETATM 11 C C11 SIA . . . E 4 -5.162 -40.703 20.937 1 244.74 ? C11 SIA 1001 B 1 HETATM 12 N N5 SIA . . . E 4 -4.692 -38.352 20.712 1 245.3 ? N5 SIA 1001 B 1 HETATM 13 O O1A SIA . . . E 4 -6.558 -37.856 14.814 1 245.77 ? O1A SIA 1001 B 1 HETATM 14 O O1B SIA . . . E 4 -6.209 -35.844 15.226 1 245.93 ? O1B SIA 1001 B 1 HETATM 15 O O4 SIA . . . E 4 -7.084 -39.701 19.092 1 246.68 ? O4 SIA 1001 B 1 HETATM 16 O O6 SIA . . . E 4 -5.547 -36.354 17.715 1 246.11 ? O6 SIA 1001 B 1 HETATM 17 O O7 SIA . . . E 4 -4.163 -36.169 21.024 1 245.84 ? O7 SIA 1001 B 1 HETATM 18 O O8 SIA . . . E 4 -5.91 -34.417 18.399 1 245.64 ? O8 SIA 1001 B 1 HETATM 19 O O9 SIA . . . E 4 -3.723 -33.39 20.788 1 245.52 ? O9 SIA 1001 B 1 HETATM 20 O O10 SIA . . . E 4 -5.08 -39.174 22.767 1 244.74 ? O10 SIA 1001 B 1 # _model_server_stats.io_time_ms 393 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 419 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #