data_6TMH # _model_server_result.job_id bM-tAHsDjBgM3MnMHdY86w _model_server_result.datetime_utc '2024-10-13 04:17:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tmh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":601}' # _entry.id 6TMH # _exptl.entry_id 6TMH _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TMH _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TMH _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 21-meric _pdbx_struct_assembly.oligomeric_count 21 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 V N N ? 9 X N N ? 9 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG1 THR 227 A THR 227 1_555 W MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? metalc ? metalc2 V O1G ATP . A ATP 601 1_555 W MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 V O1B ATP . A ATP 601 1_555 W MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc4 C OG1 THR 227 E THR 227 1_555 Y MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc5 X O2G ATP . E ATP 601 1_555 Y MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc6 X O1B ATP . E ATP 601 1_555 Y MG MG . E MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc7 D OG1 THR 227 C THR 227 1_555 AA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc8 Z O1G ATP . C ATP 601 1_555 AA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc9 Z O2B ATP . C ATP 601 1_555 AA MG MG . C MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc10 E OG1 THR 234 B THR 234 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 BA O2B ADP . B ADP 601 1_555 CA MG MG . B MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? metalc ? metalc12 G OG1 THR 234 D THR 234 1_555 EA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc13 DA O2B ADP . D ADP 601 1_555 EA MG MG . D MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6TMH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code V 9 ATP A 1 601 1 ATP ATP . W 10 MG A 1 602 101 MG MG . X 9 ATP E 1 601 1 ATP ATP . Y 10 MG E 1 602 101 MG MG . Z 9 ATP C 1 601 1 ATP ATP . AA 10 MG C 1 602 101 MG MG . BA 11 ADP B 1 601 1 ADP ADP . CA 10 MG B 1 602 101 MG MG . DA 11 ADP D 1 601 1 ADP ADP . EA 10 MG D 1 602 101 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . X 9 336.316 213.312 287.373 1 37.89 ? PG ATP 601 E 1 HETATM 2 O O1G ATP . . . X 9 336.477 211.826 287.539 1 37.89 ? O1G ATP 601 E 1 HETATM 3 O O2G ATP . . . X 9 337.205 214.017 288.362 1 37.89 ? O2G ATP 601 E 1 HETATM 4 O O3G ATP . . . X 9 334.88 213.69 287.61 1 37.89 ? O3G ATP 601 E 1 HETATM 5 P PB ATP . . . X 9 337.508 215.164 285.497 1 37.89 ? PB ATP 601 E 1 HETATM 6 O O1B ATP . . . X 9 338.409 215.548 286.641 1 37.89 ? O1B ATP 601 E 1 HETATM 7 O O2B ATP . . . X 9 336.479 216.234 285.273 1 37.89 ? O2B ATP 601 E 1 HETATM 8 O O3B ATP . . . X 9 336.758 213.746 285.853 1 37.89 ? O3B ATP 601 E 1 HETATM 9 P PA ATP . . . X 9 339.947 214.427 284.117 1 37.89 ? PA ATP 601 E 1 HETATM 10 O O1A ATP . . . X 9 340.164 213.466 285.257 1 37.89 ? O1A ATP 601 E 1 HETATM 11 O O2A ATP . . . X 9 340.922 215.57 284.199 1 37.89 ? O2A ATP 601 E 1 HETATM 12 O O3A ATP . . . X 9 338.395 214.97 284.128 1 37.89 ? O3A ATP 601 E 1 HETATM 13 O O5' ATP . . . X 9 340.192 213.618 282.713 1 37.89 ? O5' ATP 601 E 1 HETATM 14 C C5' ATP . . . X 9 339.123 212.864 282.232 1 37.89 ? C5' ATP 601 E 1 HETATM 15 C C4' ATP . . . X 9 339.487 212.322 280.831 1 37.89 ? C4' ATP 601 E 1 HETATM 16 O O4' ATP . . . X 9 339.544 213.318 279.992 1 37.89 ? O4' ATP 601 E 1 HETATM 17 C C3' ATP . . . X 9 340.891 211.688 280.873 1 37.89 ? C3' ATP 601 E 1 HETATM 18 O O3' ATP . . . X 9 340.87 210.454 280.315 1 37.89 ? O3' ATP 601 E 1 HETATM 19 C C2' ATP . . . X 9 341.779 212.632 280.052 1 37.89 ? C2' ATP 601 E 1 HETATM 20 O O2' ATP . . . X 9 342.8 211.83 279.314 1 37.89 ? O2' ATP 601 E 1 HETATM 21 C C1' ATP . . . X 9 340.958 213.206 279.222 1 37.89 ? C1' ATP 601 E 1 HETATM 22 N N9 ATP . . . X 9 341.419 214.519 278.866 1 37.89 ? N9 ATP 601 E 1 HETATM 23 C C8 ATP . . . X 9 341.427 215.673 279.526 1 37.89 ? C8 ATP 601 E 1 HETATM 24 N N7 ATP . . . X 9 341.967 216.585 278.721 1 37.89 ? N7 ATP 601 E 1 HETATM 25 C C5 ATP . . . X 9 342.284 215.98 277.57 1 37.89 ? C5 ATP 601 E 1 HETATM 26 C C6 ATP . . . X 9 342.855 216.453 276.418 1 37.89 ? C6 ATP 601 E 1 HETATM 27 N N6 ATP . . . X 9 343.304 217.787 276.092 1 37.89 ? N6 ATP 601 E 1 HETATM 28 N N1 ATP . . . X 9 343.069 215.643 275.398 1 37.89 ? N1 ATP 601 E 1 HETATM 29 C C2 ATP . . . X 9 342.724 214.339 275.49 1 37.89 ? C2 ATP 601 E 1 HETATM 30 N N3 ATP . . . X 9 342.159 213.867 276.621 1 37.89 ? N3 ATP 601 E 1 HETATM 31 C C4 ATP . . . X 9 341.944 214.697 277.655 1 37.89 ? C4 ATP 601 E 1 HETATM 32 H "H5'1" ATP . . . X 9 338.338 213.425 282.164 1 37.89 ? "H5'1" ATP 601 E 1 HETATM 33 H "H5'2" ATP . . . X 9 338.951 212.128 282.836 1 37.89 ? "H5'2" ATP 601 E 1 HETATM 34 H H4' ATP . . . X 9 338.835 211.669 280.541 1 37.89 ? H4' ATP 601 E 1 HETATM 35 H H3' ATP . . . X 9 341.214 211.638 281.783 1 37.89 ? H3' ATP 601 E 1 HETATM 36 H H2' ATP . . . X 9 342.198 213.284 280.628 1 37.89 ? H2' ATP 601 E 1 HETATM 37 H HO2' ATP . . . X 9 342.718 211.011 279.525 1 37.89 ? HO2' ATP 601 E 1 HETATM 38 H H1' ATP . . . X 9 340.854 212.657 278.434 1 37.89 ? H1' ATP 601 E 1 HETATM 39 H H8 ATP . . . X 9 341.119 215.819 280.386 1 37.89 ? H8 ATP 601 E 1 HETATM 40 H HN61 ATP . . . X 9 343.862 217.906 275.45 1 37.89 ? HN61 ATP 601 E 1 HETATM 41 H HN62 ATP . . . X 9 343.01 218.458 276.544 1 37.89 ? HN62 ATP 601 E 1 HETATM 42 H H2 ATP . . . X 9 342.873 213.767 274.774 1 37.89 ? H2 ATP 601 E 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 83 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 42 #