data_6TMU # _model_server_result.job_id TMwiPAQc_jcACM6GJZIjNg _model_server_result.datetime_utc '2024-10-19 01:38:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":600}' # _entry.id 6TMU # _exptl.entry_id 6TMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TMU _cell.length_a 145.516 _cell.length_b 151.461 _cell.length_c 261.347 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 K N N ? 5 O N N ? 5 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 30 A THR 30 1_555 I K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc2 A O LYS 50 A LYS 50 1_555 I K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc3 H MG MG . A MG 601 1_555 J O1B ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 H MG MG . A MG 601 1_555 J O2A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc5 I K K . A K 602 1_555 J O1G ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 602 1_555 J O1A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc7 I K K . A K 602 1_555 J O3A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.488 ? metalc ? metalc8 C O THR 30 C THR 30 1_555 M K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc9 C O LYS 50 C LYS 50 1_555 M K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.289 ? metalc ? metalc10 L MG MG . C MG 601 1_555 N O1B ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc11 L MG MG . C MG 601 1_555 N O3G ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc12 L MG MG . C MG 601 1_555 N O2A ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 M K K . C K 602 1_555 N O1G ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc14 M K K . C K 602 1_555 N O1A ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc15 E O THR 30 E THR 30 1_555 Q K K . E K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc16 E O LYS 50 E LYS 50 1_555 Q K K . E K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.422 ? metalc ? metalc17 E OD1 ASP 86 E ASP 86 1_555 P MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc18 P MG MG . E MG 601 1_555 R O3G ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc19 P MG MG . E MG 601 1_555 R O1B ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc20 P MG MG . E MG 601 1_555 R O2A ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc21 Q K K . E K 602 1_555 R O1G ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc22 Q K K . E K 602 1_555 R O1A ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc23 G O THR 30 G THR 30 1_555 U K K . G K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc24 G O LYS 50 G LYS 50 1_555 U K K . G K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.264 ? metalc ? metalc25 T MG MG . G MG 601 1_555 V O3G ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc26 T MG MG . G MG 601 1_555 V O1B ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc27 T MG MG . G MG 601 1_555 V O2A ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc28 U K K . G K 602 1_555 V O1G ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.258 ? metalc ? metalc29 U K K . G K 602 1_555 V O1A ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 6TMU _atom_sites.fract_transf_matrix[1][1] 0.006872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MG A 1 601 601 MG MG . I 3 K A 1 602 603 K K . J 4 ATP A 1 603 600 ATP ATP . K 5 ADP B 1 600 600 ADP ADP . L 2 MG C 1 601 601 MG MG . M 3 K C 1 602 603 K K . N 4 ATP C 1 603 600 ATP ATP . O 5 ADP D 1 600 600 ADP ADP . P 2 MG E 1 601 601 MG MG . Q 3 K E 1 602 603 K K . R 4 ATP E 1 603 600 ATP ATP . S 5 ADP F 1 600 600 ADP ADP . T 2 MG G 1 601 601 MG MG . U 3 K G 1 602 603 K K . V 4 ATP G 1 603 600 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . S 5 -12.561 -63.14 -90.83 1 181.83 ? PB ADP 600 F 1 HETATM 2 O O1B ADP . . . S 5 -13.209 -62.026 -91.612 1 186.3 ? O1B ADP 600 F 1 HETATM 3 O O2B ADP . . . S 5 -12.986 -63.182 -89.384 1 182.4 ? O2B ADP 600 F 1 HETATM 4 O O3B ADP . . . S 5 -12.559 -64.481 -91.527 1 176.57 ? O3B ADP 600 F 1 HETATM 5 P PA ADP . . . S 5 -10.106 -62.442 -92.046 1 196.13 ? PA ADP 600 F 1 HETATM 6 O O1A ADP . . . S 5 -10.926 -62.637 -93.302 1 198.6 ? O1A ADP 600 F 1 HETATM 7 O O2A ADP . . . S 5 -8.821 -63.218 -91.877 1 194.61 ? O2A ADP 600 F 1 HETATM 8 O O3A ADP . . . S 5 -11.007 -62.728 -90.74 1 186.24 ? O3A ADP 600 F 1 HETATM 9 O O5' ADP . . . S 5 -9.807 -60.864 -91.902 1 192.76 ? O5' ADP 600 F 1 HETATM 10 C C5' ADP . . . S 5 -8.599 -60.406 -91.303 1 187.91 ? C5' ADP 600 F 1 HETATM 11 C C4' ADP . . . S 5 -8.742 -59.089 -90.549 1 187.88 ? C4' ADP 600 F 1 HETATM 12 O O4' ADP . . . S 5 -7.523 -58.354 -90.687 1 185.24 ? O4' ADP 600 F 1 HETATM 13 C C3' ADP . . . S 5 -9.879 -58.198 -91.029 1 192.85 ? C3' ADP 600 F 1 HETATM 14 O O3' ADP . . . S 5 -10.891 -58.111 -90.017 1 197.83 ? O3' ADP 600 F 1 HETATM 15 C C2' ADP . . . S 5 -9.259 -56.842 -91.315 1 194.87 ? C2' ADP 600 F 1 HETATM 16 O O2' ADP . . . S 5 -9.749 -55.82 -90.444 1 199.21 ? O2' ADP 600 F 1 HETATM 17 C C1' ADP . . . S 5 -7.771 -56.997 -91.059 1 189.07 ? C1' ADP 600 F 1 HETATM 18 N N9 ADP . . . S 5 -6.979 -56.621 -92.255 1 187.01 ? N9 ADP 600 F 1 HETATM 19 C C8 ADP . . . S 5 -7.224 -56.934 -93.545 1 187.2 ? C8 ADP 600 F 1 HETATM 20 N N7 ADP . . . S 5 -6.268 -56.405 -94.352 1 188.85 ? N7 ADP 600 F 1 HETATM 21 C C5 ADP . . . S 5 -5.394 -55.746 -93.572 1 187.43 ? C5 ADP 600 F 1 HETATM 22 C C6 ADP . . . S 5 -4.152 -54.963 -93.769 1 189.44 ? C6 ADP 600 F 1 HETATM 23 N N6 ADP . . . S 5 -3.637 -54.772 -95.004 1 193.9 ? N6 ADP 600 F 1 HETATM 24 N N1 ADP . . . S 5 -3.55 -54.444 -92.673 1 188.16 ? N1 ADP 600 F 1 HETATM 25 C C2 ADP . . . S 5 -4.046 -54.62 -91.432 1 186.28 ? C2 ADP 600 F 1 HETATM 26 N N3 ADP . . . S 5 -5.17 -55.321 -91.186 1 184.21 ? N3 ADP 600 F 1 HETATM 27 C C4 ADP . . . S 5 -5.871 -55.893 -92.193 1 185.48 ? C4 ADP 600 F 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #