data_6TMU # _model_server_result.job_id j_bF3eKH8xQU-aasld8j8w _model_server_result.datetime_utc '2024-10-19 01:35:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tmu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":603}' # _entry.id 6TMU # _exptl.entry_id 6TMU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TMU _cell.length_a 145.516 _cell.length_b 151.461 _cell.length_c 261.347 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TMU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 N N N ? 4 R N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 30 A THR 30 1_555 I K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? metalc ? metalc2 A O LYS 50 A LYS 50 1_555 I K K . A K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.284 ? metalc ? metalc3 H MG MG . A MG 601 1_555 J O1B ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc4 H MG MG . A MG 601 1_555 J O2A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc5 I K K . A K 602 1_555 J O1G ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc6 I K K . A K 602 1_555 J O1A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.512 ? metalc ? metalc7 I K K . A K 602 1_555 J O3A ATP . A ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.488 ? metalc ? metalc8 C O THR 30 C THR 30 1_555 M K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc9 C O LYS 50 C LYS 50 1_555 M K K . C K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.289 ? metalc ? metalc10 L MG MG . C MG 601 1_555 N O1B ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc11 L MG MG . C MG 601 1_555 N O3G ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc12 L MG MG . C MG 601 1_555 N O2A ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc13 M K K . C K 602 1_555 N O1G ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc14 M K K . C K 602 1_555 N O1A ATP . C ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc15 E O THR 30 E THR 30 1_555 Q K K . E K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.161 ? metalc ? metalc16 E O LYS 50 E LYS 50 1_555 Q K K . E K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.422 ? metalc ? metalc17 E OD1 ASP 86 E ASP 86 1_555 P MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc18 P MG MG . E MG 601 1_555 R O3G ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc19 P MG MG . E MG 601 1_555 R O1B ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc20 P MG MG . E MG 601 1_555 R O2A ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc21 Q K K . E K 602 1_555 R O1G ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? metalc ? metalc22 Q K K . E K 602 1_555 R O1A ATP . E ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc23 G O THR 30 G THR 30 1_555 U K K . G K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc24 G O LYS 50 G LYS 50 1_555 U K K . G K 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.264 ? metalc ? metalc25 T MG MG . G MG 601 1_555 V O3G ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc26 T MG MG . G MG 601 1_555 V O1B ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc27 T MG MG . G MG 601 1_555 V O2A ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc28 U K K . G K 602 1_555 V O1G ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.258 ? metalc ? metalc29 U K K . G K 602 1_555 V O1A ATP . G ATP 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 6TMU _atom_sites.fract_transf_matrix[1][1] 0.006872 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MG A 1 601 601 MG MG . I 3 K A 1 602 603 K K . J 4 ATP A 1 603 600 ATP ATP . K 5 ADP B 1 600 600 ADP ADP . L 2 MG C 1 601 601 MG MG . M 3 K C 1 602 603 K K . N 4 ATP C 1 603 600 ATP ATP . O 5 ADP D 1 600 600 ADP ADP . P 2 MG E 1 601 601 MG MG . Q 3 K E 1 602 603 K K . R 4 ATP E 1 603 600 ATP ATP . S 5 ADP F 1 600 600 ADP ADP . T 2 MG G 1 601 601 MG MG . U 3 K G 1 602 603 K K . V 4 ATP G 1 603 600 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . J 4 -45.003 -115.027 -52.661 1 148.36 ? PG ATP 603 A 1 HETATM 2 O O1G ATP . . . J 4 -43.608 -114.446 -52.568 1 144.08 ? O1G ATP 603 A 1 HETATM 3 O O2G ATP . . . J 4 -45.318 -115.604 -54.022 1 147.72 ? O2G ATP 603 A 1 HETATM 4 O O3G ATP . . . J 4 -46.082 -114.131 -52.094 1 150.36 ? O3G ATP 603 A 1 HETATM 5 P PB ATP . . . J 4 -45.008 -116.171 -50.08 1 136.38 ? PB ATP 603 A 1 HETATM 6 O O1B ATP . . . J 4 -46.407 -115.828 -49.622 1 138.02 ? O1B ATP 603 A 1 HETATM 7 O O2B ATP . . . J 4 -44.297 -117.354 -49.479 1 134.4 ? O2B ATP 603 A 1 HETATM 8 O O3B ATP . . . J 4 -45.016 -116.321 -51.687 1 143.11 ? O3B ATP 603 A 1 HETATM 9 P PA ATP . . . J 4 -44.371 -113.668 -48.989 1 137.77 ? PA ATP 603 A 1 HETATM 10 O O1A ATP . . . J 4 -43.216 -112.702 -49.134 1 134.4 ? O1A ATP 603 A 1 HETATM 11 O O2A ATP . . . J 4 -45.782 -113.185 -49.26 1 140.81 ? O2A ATP 603 A 1 HETATM 12 O O3A ATP . . . J 4 -44.023 -114.914 -49.928 1 133.78 ? O3A ATP 603 A 1 HETATM 13 O O5' ATP . . . J 4 -44.276 -114.386 -47.54 1 130.02 ? O5' ATP 603 A 1 HETATM 14 C C5' ATP . . . J 4 -45.4 -114.655 -46.693 1 121.31 ? C5' ATP 603 A 1 HETATM 15 C C4' ATP . . . J 4 -44.918 -114.916 -45.263 1 114.52 ? C4' ATP 603 A 1 HETATM 16 O O4' ATP . . . J 4 -44.898 -113.696 -44.519 1 108.77 ? O4' ATP 603 A 1 HETATM 17 C C3' ATP . . . J 4 -45.838 -115.855 -44.492 1 114.85 ? C3' ATP 603 A 1 HETATM 18 O O3' ATP . . . J 4 -45.105 -116.622 -43.526 1 112.76 ? O3' ATP 603 A 1 HETATM 19 C C2' ATP . . . J 4 -46.784 -114.92 -43.784 1 114.5 ? C2' ATP 603 A 1 HETATM 20 O O2' ATP . . . J 4 -47.306 -115.494 -42.588 1 113.13 ? O2' ATP 603 A 1 HETATM 21 C C1' ATP . . . J 4 -45.881 -113.744 -43.483 1 112.77 ? C1' ATP 603 A 1 HETATM 22 N N9 ATP . . . J 4 -46.64 -112.476 -43.409 1 116.12 ? N9 ATP 603 A 1 HETATM 23 C C8 ATP . . . J 4 -47.427 -111.9 -44.341 1 117.4 ? C8 ATP 603 A 1 HETATM 24 N N7 ATP . . . J 4 -47.937 -110.729 -43.874 1 118.25 ? N7 ATP 603 A 1 HETATM 25 C C5 ATP . . . J 4 -47.465 -110.552 -42.629 1 119.36 ? C5 ATP 603 A 1 HETATM 26 C C6 ATP . . . J 4 -47.586 -109.546 -41.555 1 124.45 ? C6 ATP 603 A 1 HETATM 27 N N6 ATP . . . J 4 -48.346 -108.438 -41.715 1 129.88 ? N6 ATP 603 A 1 HETATM 28 N N1 ATP . . . J 4 -46.909 -109.766 -40.402 1 124.14 ? N1 ATP 603 A 1 HETATM 29 C C2 ATP . . . J 4 -46.149 -110.859 -40.21 1 121.17 ? C2 ATP 603 A 1 HETATM 30 N N3 ATP . . . J 4 -46 -111.807 -41.143 1 118.66 ? N3 ATP 603 A 1 HETATM 31 C C4 ATP . . . J 4 -46.617 -111.708 -42.337 1 117.5 ? C4 ATP 603 A 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #