data_6TN8 # _model_server_result.job_id v8K3BQ9lLZoYeUr1p8pG-g _model_server_result.datetime_utc '2024-10-11 00:29:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 6TN8 # _exptl.entry_id 6TN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.415 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TN8 _cell.length_a 59.55 _cell.length_b 86.54 _cell.length_c 139.599 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O3' _chem_comp.formula_weight 353.415 _chem_comp.id 5U6 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[4-[(dimethylamino)methyl]-2,5-dimethoxy-phenyl]-2-methyl-2,7-naphthyridin-1-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 O25 5U6 sing 1 n n O25 C17 5U6 sing 2 n n C13 C17 5U6 doub 3 n y C13 C21 5U6 sing 4 n y C17 C18 5U6 sing 5 n y C14 C21 5U6 sing 6 n n C14 N15 5U6 sing 7 n n C21 C20 5U6 doub 8 n y C16 N15 5U6 sing 9 n n C18 C10 5U6 sing 10 n n C18 C19 5U6 doub 11 n y N15 C24 5U6 sing 12 n n C1 C5 5U6 doub 13 n y C1 C2 5U6 sing 14 n y C10 C5 5U6 sing 15 n n C10 C9 5U6 doub 16 n n C20 C19 5U6 sing 17 n y C20 O22 5U6 sing 18 n n C5 C6 5U6 sing 19 n y C2 N3 5U6 doub 20 n y C9 N8 5U6 sing 21 n n C6 C4 5U6 doub 22 n y C6 C7 5U6 sing 23 n n N3 C4 5U6 sing 24 n y N8 C7 5U6 sing 25 n n N8 C12 5U6 sing 26 n n C7 O11 5U6 doub 27 n n O22 C23 5U6 sing 28 n n C4 H1 5U6 sing 29 n n C13 H2 5U6 sing 30 n n C24 H3 5U6 sing 31 n n C24 H4 5U6 sing 32 n n C24 H5 5U6 sing 33 n n C26 H6 5U6 sing 34 n n C26 H7 5U6 sing 35 n n C26 H8 5U6 sing 36 n n C1 H9 5U6 sing 37 n n C2 H10 5U6 sing 38 n n C16 H11 5U6 sing 39 n n C16 H12 5U6 sing 40 n n C16 H13 5U6 sing 41 n n C9 H14 5U6 sing 42 n n C12 H15 5U6 sing 43 n n C12 H16 5U6 sing 44 n n C12 H17 5U6 sing 45 n n C19 H18 5U6 sing 46 n n C14 H19 5U6 sing 47 n n C14 H20 5U6 sing 48 n n C23 H22 5U6 sing 49 n n C23 H23 5U6 sing 50 n n C23 H24 5U6 sing 51 n n # _atom_sites.entry_id 6TN8 _atom_sites.fract_transf_matrix[1][1] 0.016793 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007163 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DIO A 1 501 501 DIO DOX . C 2 DIO A 1 502 601 DIO DOX . D 2 DIO A 1 503 701 DIO DOX . E 2 DIO A 1 504 801 DIO DOX . F 3 5U6 A 1 505 1 5U6 E58 . G 4 SO4 A 1 506 1 SO4 SO4 . H 4 SO4 A 1 507 2 SO4 SO4 . I 5 EDO A 1 508 1 EDO EDO . J 5 EDO A 1 509 2 EDO EDO . K 5 EDO A 1 510 3 EDO EDO . L 6 HOH A 1 601 111 HOH HOH . L 6 HOH A 2 602 71 HOH HOH . L 6 HOH A 3 603 7 HOH HOH . L 6 HOH A 4 604 105 HOH HOH . L 6 HOH A 5 605 39 HOH HOH . L 6 HOH A 6 606 99 HOH HOH . L 6 HOH A 7 607 16 HOH HOH . L 6 HOH A 8 608 55 HOH HOH . L 6 HOH A 9 609 45 HOH HOH . L 6 HOH A 10 610 108 HOH HOH . L 6 HOH A 11 611 33 HOH HOH . L 6 HOH A 12 612 59 HOH HOH . L 6 HOH A 13 613 81 HOH HOH . L 6 HOH A 14 614 37 HOH HOH . L 6 HOH A 15 615 104 HOH HOH . L 6 HOH A 16 616 70 HOH HOH . L 6 HOH A 17 617 73 HOH HOH . L 6 HOH A 18 618 51 HOH HOH . L 6 HOH A 19 619 13 HOH HOH . L 6 HOH A 20 620 19 HOH HOH . L 6 HOH A 21 621 103 HOH HOH . L 6 HOH A 22 622 87 HOH HOH . L 6 HOH A 23 623 86 HOH HOH . L 6 HOH A 24 624 56 HOH HOH . L 6 HOH A 25 625 31 HOH HOH . L 6 HOH A 26 626 38 HOH HOH . L 6 HOH A 27 627 90 HOH HOH . L 6 HOH A 28 628 77 HOH HOH . L 6 HOH A 29 629 47 HOH HOH . L 6 HOH A 30 630 76 HOH HOH . L 6 HOH A 31 631 34 HOH HOH . L 6 HOH A 32 632 48 HOH HOH . L 6 HOH A 33 633 72 HOH HOH . L 6 HOH A 34 634 93 HOH HOH . L 6 HOH A 35 635 2 HOH HOH . L 6 HOH A 36 636 97 HOH HOH . L 6 HOH A 37 637 100 HOH HOH . L 6 HOH A 38 638 75 HOH HOH . L 6 HOH A 39 639 3 HOH HOH . L 6 HOH A 40 640 85 HOH HOH . L 6 HOH A 41 641 95 HOH HOH . L 6 HOH A 42 642 80 HOH HOH . L 6 HOH A 43 643 23 HOH HOH . L 6 HOH A 44 644 106 HOH HOH . L 6 HOH A 45 645 22 HOH HOH . L 6 HOH A 46 646 20 HOH HOH . L 6 HOH A 47 647 17 HOH HOH . L 6 HOH A 48 648 42 HOH HOH . L 6 HOH A 49 649 35 HOH HOH . L 6 HOH A 50 650 6 HOH HOH . L 6 HOH A 51 651 110 HOH HOH . L 6 HOH A 52 652 107 HOH HOH . L 6 HOH A 53 653 25 HOH HOH . L 6 HOH A 54 654 50 HOH HOH . L 6 HOH A 55 655 27 HOH HOH . L 6 HOH A 56 656 101 HOH HOH . L 6 HOH A 57 657 43 HOH HOH . L 6 HOH A 58 658 113 HOH HOH . L 6 HOH A 59 659 10 HOH HOH . L 6 HOH A 60 660 109 HOH HOH . L 6 HOH A 61 661 112 HOH HOH . L 6 HOH A 62 662 88 HOH HOH . L 6 HOH A 63 663 98 HOH HOH . L 6 HOH A 64 664 44 HOH HOH . L 6 HOH A 65 665 41 HOH HOH . L 6 HOH A 66 666 96 HOH HOH . L 6 HOH A 67 667 102 HOH HOH . L 6 HOH A 68 668 89 HOH HOH . L 6 HOH A 69 669 5 HOH HOH . L 6 HOH A 70 670 32 HOH HOH . L 6 HOH A 71 671 40 HOH HOH . L 6 HOH A 72 672 15 HOH HOH . L 6 HOH A 73 673 8 HOH HOH . L 6 HOH A 74 674 36 HOH HOH . L 6 HOH A 75 675 79 HOH HOH . L 6 HOH A 76 676 24 HOH HOH . L 6 HOH A 77 677 49 HOH HOH . L 6 HOH A 78 678 14 HOH HOH . L 6 HOH A 79 679 68 HOH HOH . L 6 HOH A 80 680 12 HOH HOH . L 6 HOH A 81 681 28 HOH HOH . L 6 HOH A 82 682 94 HOH HOH . L 6 HOH A 83 683 83 HOH HOH . L 6 HOH A 84 684 92 HOH HOH . L 6 HOH A 85 685 60 HOH HOH . L 6 HOH A 86 686 52 HOH HOH . L 6 HOH A 87 687 29 HOH HOH . L 6 HOH A 88 688 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 5U6 . . . F 3 -52.182 202.746 155.204 1 32.03 ? N3 5U6 505 A 1 HETATM 2 C C4 5U6 . . . F 3 -52.52 201.953 154.243 1 29.6 ? C4 5U6 505 A 1 HETATM 3 C C5 5U6 . . . F 3 -52.662 200.053 155.75 1 28.76 ? C5 5U6 505 A 1 HETATM 4 C C6 5U6 . . . F 3 -52.78 200.543 154.482 1 26.38 ? C6 5U6 505 A 1 HETATM 5 C C7 5U6 . . . F 3 -53.185 199.586 153.33 1 29.58 ? C7 5U6 505 A 1 HETATM 6 C C10 5U6 . . . F 3 -52.94 198.581 156.009 1 26.05 ? C10 5U6 505 A 1 HETATM 7 C C13 5U6 . . . F 3 -51.735 196.558 159.038 1 26.87 ? C13 5U6 505 A 1 HETATM 8 C C17 5U6 . . . F 3 -51.849 197.049 157.708 1 29.71 ? C17 5U6 505 A 1 HETATM 9 C C20 5U6 . . . F 3 -53.526 198.055 159.736 1 26.84 ? C20 5U6 505 A 1 HETATM 10 C C21 5U6 . . . F 3 -52.578 197.046 160.026 1 28.62 ? C21 5U6 505 A 1 HETATM 11 C C24 5U6 . . . F 3 -52.648 194.237 161.633 1 46.4 ? C24 5U6 505 A 1 HETATM 12 C C26 5U6 . . . F 3 -51.351 195.183 156.325 1 35.69 ? C26 5U6 505 A 1 HETATM 13 C C18 5U6 . . . F 3 -52.807 198.031 157.421 1 24.06 ? C18 5U6 505 A 1 HETATM 14 C C1 5U6 . . . F 3 -52.291 200.959 156.78 1 22.95 ? C1 5U6 505 A 1 HETATM 15 N N8 5U6 . . . F 3 -53.439 198.188 153.599 1 25.97 ? N8 5U6 505 A 1 HETATM 16 C C2 5U6 . . . F 3 -52.053 202.323 156.453 1 28.27 ? C2 5U6 505 A 1 HETATM 17 C C16 5U6 . . . F 3 -54.709 195.571 161.586 1 33.27 ? C16 5U6 505 A 1 HETATM 18 O O25 5U6 . . . F 3 -51.004 196.526 156.66 1 27.62 ? O25 5U6 505 A 1 HETATM 19 C C9 5U6 . . . F 3 -53.325 197.665 154.898 1 24.64 ? C9 5U6 505 A 1 HETATM 20 C C12 5U6 . . . F 3 -53.82 197.223 152.57 1 33 ? C12 5U6 505 A 1 HETATM 21 C C19 5U6 . . . F 3 -53.644 198.536 158.429 1 34.39 ? C19 5U6 505 A 1 HETATM 22 C C14 5U6 . . . F 3 -52.419 196.538 161.453 1 24.57 ? C14 5U6 505 A 1 HETATM 23 O O22 5U6 . . . F 3 -54.359 198.553 160.767 1 27.19 ? O22 5U6 505 A 1 HETATM 24 N N15 5U6 . . . F 3 -53.275 195.476 161.904 1 35.68 ? N15 5U6 505 A 1 HETATM 25 O O11 5U6 . . . F 3 -53.292 200.029 152.183 1 34.63 ? O11 5U6 505 A 1 HETATM 26 C C23 5U6 . . . F 3 -55.073 199.61 160.224 1 30.36 ? C23 5U6 505 A 1 HETATM 27 H H1 5U6 . . . F 3 -52.602 202.301 153.35 1 35.68 ? H1 5U6 505 A 1 HETATM 28 H H2 5U6 . . . F 3 -51.055 195.869 159.258 1 32.41 ? H2 5U6 505 A 1 HETATM 29 H H3 5U6 . . . F 3 -51.727 194.267 161.943 1 55.84 ? H3 5U6 505 A 1 HETATM 30 H H4 5U6 . . . F 3 -52.664 194.07 160.675 1 55.84 ? H4 5U6 505 A 1 HETATM 31 H H5 5U6 . . . F 3 -53.124 193.526 162.095 1 55.84 ? H5 5U6 505 A 1 HETATM 32 H H6 5U6 . . . F 3 -51.138 195.013 155.372 1 42.99 ? H6 5U6 505 A 1 HETATM 33 H H7 5U6 . . . F 3 -52.32 195.043 156.474 1 42.99 ? H7 5U6 505 A 1 HETATM 34 H H8 5U6 . . . F 3 -50.837 194.555 156.893 1 42.99 ? H8 5U6 505 A 1 HETATM 35 H H9 5U6 . . . F 3 -52.202 200.653 157.684 1 27.71 ? H9 5U6 505 A 1 HETATM 36 H H10 5U6 . . . F 3 -51.794 202.952 157.153 1 34.09 ? H10 5U6 505 A 1 HETATM 37 H H11 5U6 . . . F 3 -55.197 194.866 162.063 1 40.09 ? H11 5U6 505 A 1 HETATM 38 H H12 5U6 . . . F 3 -55.049 196.448 161.863 1 40.09 ? H12 5U6 505 A 1 HETATM 39 H H13 5U6 . . . F 3 -54.838 195.461 160.62 1 40.09 ? H13 5U6 505 A 1 HETATM 40 H H14 5U6 . . . F 3 -53.496 196.721 155.068 1 29.73 ? H14 5U6 505 A 1 HETATM 41 H H15 5U6 . . . F 3 -53.922 196.337 152.971 1 39.76 ? H15 5U6 505 A 1 HETATM 42 H H16 5U6 . . . F 3 -54.668 197.494 152.164 1 39.76 ? H16 5U6 505 A 1 HETATM 43 H H17 5U6 . . . F 3 -53.128 197.188 151.88 1 39.76 ? H17 5U6 505 A 1 HETATM 44 H H18 5U6 . . . F 3 -54.297 199.21 158.222 1 41.43 ? H18 5U6 505 A 1 HETATM 45 H H19 5U6 . . . F 3 -51.497 196.226 161.548 1 29.65 ? H19 5U6 505 A 1 HETATM 46 H H20 5U6 . . . F 3 -52.564 197.299 162.048 1 29.65 ? H20 5U6 505 A 1 HETATM 47 H H22 5U6 . . . F 3 -55.644 199.286 159.536 1 36.6 ? H22 5U6 505 A 1 HETATM 48 H H23 5U6 . . . F 3 -55.595 200.022 160.903 1 36.6 ? H23 5U6 505 A 1 HETATM 49 H H24 5U6 . . . F 3 -54.467 200.247 159.859 1 36.6 ? H24 5U6 505 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 49 #