data_6TNC # _model_server_result.job_id lrSVAYh0EGh_b5H1oD6Yzw _model_server_result.datetime_utc '2025-06-30 20:16:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tnc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6TNC # _exptl.entry_id 6TNC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 389.473 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-cyclopropyl-4-{8-[(thiophen-2-ylmethyl)amino]imidazo[1,2-a]pyrazin-3-yl}benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TNC _cell.length_a 108.319 _cell.length_b 111.599 _cell.length_c 70.945 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TNC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 173 A GLY 685 1_555 A N TPO 174 A TPO 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C TPO 174 A TPO 686 1_555 A N VAL 175 A VAL 687 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C21 H19 N5 O S' _chem_comp.formula_weight 389.473 _chem_comp.id O23 _chem_comp.mon_nstd_flag . _chem_comp.name N-cyclopropyl-4-{8-[(thiophen-2-ylmethyl)amino]imidazo[1,2-a]pyrazin-3-yl}benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C1 O23 sing 237 n n C3 C2 O23 sing 238 n n C1 C2 O23 sing 239 n n C1 N O23 sing 240 n n N C O23 sing 241 n n O C O23 doub 242 n n C C4 O23 sing 243 n n C4 C9 O23 doub 244 n y C4 C5 O23 sing 245 n y C9 C8 O23 sing 246 n y C5 C6 O23 doub 247 n y C8 C7 O23 doub 248 n y C6 C7 O23 sing 249 n y C7 C10 O23 sing 250 n n C10 N2 O23 sing 251 n y C10 C11 O23 doub 252 n y C13 N2 O23 sing 253 n y C13 C14 O23 doub 254 n y N2 C12 O23 sing 255 n y C11 N1 O23 sing 256 n y C14 N3 O23 sing 257 n y C12 N1 O23 doub 258 n y C12 C15 O23 sing 259 n y N3 C15 O23 doub 260 n y C15 N4 O23 sing 261 n n N4 C16 O23 sing 262 n n C16 C17 O23 sing 263 n n C17 C18 O23 doub 264 n y C17 S O23 sing 265 n y C18 C19 O23 sing 266 n y S C20 O23 sing 267 n y C19 C20 O23 doub 268 n y N H1 O23 sing 269 n n C1 H2 O23 sing 270 n n C3 H3 O23 sing 271 n n C3 H4 O23 sing 272 n n C2 H5 O23 sing 273 n n C2 H6 O23 sing 274 n n C9 H7 O23 sing 275 n n C8 H8 O23 sing 276 n n C6 H9 O23 sing 277 n n C5 H10 O23 sing 278 n n C13 H11 O23 sing 279 n n C14 H12 O23 sing 280 n n C11 H13 O23 sing 281 n n N4 H14 O23 sing 282 n n C16 H15 O23 sing 283 n n C16 H16 O23 sing 284 n n C20 H17 O23 sing 285 n n C19 H18 O23 sing 286 n n C18 H19 O23 sing 287 n n # _atom_sites.entry_id 6TNC _atom_sites.fract_transf_matrix[1][1] 0.009232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008961 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014095 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 O23 A 1 901 1017 O23 LIG . C 3 CL A 1 902 1 CL CL . D 4 HOH A 1 1001 75 HOH HOH . D 4 HOH A 2 1002 49 HOH HOH . D 4 HOH A 3 1003 24 HOH HOH . D 4 HOH A 4 1004 2 HOH HOH . D 4 HOH A 5 1005 51 HOH HOH . D 4 HOH A 6 1006 67 HOH HOH . D 4 HOH A 7 1007 58 HOH HOH . D 4 HOH A 8 1008 1 HOH HOH . D 4 HOH A 9 1009 13 HOH HOH . D 4 HOH A 10 1010 14 HOH HOH . D 4 HOH A 11 1011 77 HOH HOH . D 4 HOH A 12 1012 43 HOH HOH . D 4 HOH A 13 1013 30 HOH HOH . D 4 HOH A 14 1014 32 HOH HOH . D 4 HOH A 15 1015 66 HOH HOH . D 4 HOH A 16 1016 31 HOH HOH . D 4 HOH A 17 1017 45 HOH HOH . D 4 HOH A 18 1018 55 HOH HOH . D 4 HOH A 19 1019 68 HOH HOH . D 4 HOH A 20 1020 84 HOH HOH . D 4 HOH A 21 1021 76 HOH HOH . D 4 HOH A 22 1022 44 HOH HOH . D 4 HOH A 23 1023 86 HOH HOH . D 4 HOH A 24 1024 35 HOH HOH . D 4 HOH A 25 1025 60 HOH HOH . D 4 HOH A 26 1026 61 HOH HOH . D 4 HOH A 27 1027 83 HOH HOH . D 4 HOH A 28 1028 12 HOH HOH . D 4 HOH A 29 1029 54 HOH HOH . D 4 HOH A 30 1030 70 HOH HOH . D 4 HOH A 31 1031 27 HOH HOH . D 4 HOH A 32 1032 81 HOH HOH . D 4 HOH A 33 1033 82 HOH HOH . D 4 HOH A 34 1034 34 HOH HOH . D 4 HOH A 35 1035 6 HOH HOH . D 4 HOH A 36 1036 38 HOH HOH . D 4 HOH A 37 1037 3 HOH HOH . D 4 HOH A 38 1038 62 HOH HOH . D 4 HOH A 39 1039 80 HOH HOH . D 4 HOH A 40 1040 46 HOH HOH . D 4 HOH A 41 1041 87 HOH HOH . D 4 HOH A 42 1042 42 HOH HOH . D 4 HOH A 43 1043 85 HOH HOH . D 4 HOH A 44 1044 71 HOH HOH . D 4 HOH A 45 1045 78 HOH HOH . D 4 HOH A 46 1046 28 HOH HOH . D 4 HOH A 47 1047 10 HOH HOH . D 4 HOH A 48 1048 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O O23 . . . B 2 40.256 32.687 40.254 1 52.88 ? O O23 901 A 1 HETATM 2 C C O23 . . . B 2 40.175 32.122 39.168 1 50.9 ? C O23 901 A 1 HETATM 3 N N O23 . . . B 2 39.028 31.675 38.668 1 55.78 ? N O23 901 A 1 HETATM 4 C C1 O23 . . . B 2 37.763 31.828 39.4 1 59.96 ? C1 O23 901 A 1 HETATM 5 C C3 O23 . . . B 2 36.745 30.707 39.16 1 57.44 ? C3 O23 901 A 1 HETATM 6 C C2 O23 . . . B 2 37.546 30.758 40.469 1 59.15 ? C2 O23 901 A 1 HETATM 7 C C4 O23 . . . B 2 41.433 31.878 38.338 1 51.22 ? C4 O23 901 A 1 HETATM 8 C C9 O23 . . . B 2 41.587 30.72 37.578 1 51.72 ? C9 O23 901 A 1 HETATM 9 C C8 O23 . . . B 2 42.733 30.494 36.83 1 55.02 ? C8 O23 901 A 1 HETATM 10 C C7 O23 . . . B 2 43.764 31.436 36.841 1 54.25 ? C7 O23 901 A 1 HETATM 11 C C6 O23 . . . B 2 43.613 32.589 37.612 1 50.46 ? C6 O23 901 A 1 HETATM 12 C C5 O23 . . . B 2 42.456 32.818 38.358 1 50.57 ? C5 O23 901 A 1 HETATM 13 C C10 O23 . . . B 2 44.932 31.202 36.101 1 59.96 ? C10 O23 901 A 1 HETATM 14 N N2 O23 . . . B 2 45.709 32.199 35.513 1 54.14 ? N2 O23 901 A 1 HETATM 15 C C13 O23 . . . B 2 45.624 33.601 35.428 1 63.8 ? C13 O23 901 A 1 HETATM 16 C C14 O23 . . . B 2 46.609 34.295 34.727 1 65.76 ? C14 O23 901 A 1 HETATM 17 N N3 O23 . . . B 2 47.61 33.64 34.148 1 63.2 ? N3 O23 901 A 1 HETATM 18 C C15 O23 . . . B 2 47.726 32.297 34.206 1 58.51 ? C15 O23 901 A 1 HETATM 19 C C12 O23 . . . B 2 46.765 31.541 34.89 1 60.5 ? C12 O23 901 A 1 HETATM 20 N N1 O23 . . . B 2 46.616 30.23 35.112 1 53.94 ? N1 O23 901 A 1 HETATM 21 C C11 O23 . . . B 2 45.515 30.028 35.84 1 60.09 ? C11 O23 901 A 1 HETATM 22 N N4 O23 . . . B 2 48.747 31.688 33.606 1 60.92 ? N4 O23 901 A 1 HETATM 23 C C16 O23 . . . B 2 49.9 32.432 33.054 1 72.28 ? C16 O23 901 A 1 HETATM 24 C C17 O23 . . . B 2 50.896 32.853 34.149 1 63.94 ? C17 O23 901 A 1 HETATM 25 S S O23 . . . B 2 51.992 31.782 34.873 1 76.18 ? S O23 901 A 1 HETATM 26 C C20 O23 . . . B 2 52.684 32.938 35.892 1 62.79 ? C20 O23 901 A 1 HETATM 27 C C19 O23 . . . B 2 52.049 34.1 35.64 1 67.78 ? C19 O23 901 A 1 HETATM 28 C C18 O23 . . . B 2 51.081 34.063 34.697 1 57 ? C18 O23 901 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #