data_6TND # _model_server_result.job_id yy2b3Ti82Ar74wV4_MEItw _model_server_result.datetime_utc '2025-02-18 11:36:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":901}' # _entry.id 6TND # _exptl.entry_id 6TND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 561.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BAY 1217389' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6TND _cell.length_a 71.13 _cell.length_b 107.8 _cell.length_c 112.896 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TND _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C27 H24 F5 N5 O3' _chem_comp.formula_weight 561.503 _chem_comp.id 8RH _chem_comp.mon_nstd_flag . _chem_comp.name 'BAY 1217389' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C41 C34 8RH sing 1 n n C41 C42 8RH sing 2 n n C34 C42 8RH sing 3 n n C34 N32 8RH sing 4 n n N32 C31 8RH sing 5 n n C38 O37 8RH sing 6 n n C31 O33 8RH doub 7 n n C31 C27 8RH sing 8 n n O37 C22 8RH sing 9 n n F36 C20 8RH sing 10 n n C30 C25 8RH sing 11 n n C27 C25 8RH doub 12 n y C27 C29 8RH sing 13 n y C22 C20 8RH doub 14 n y C22 C24 8RH sing 15 n y C20 C21 8RH sing 16 n y C25 C26 8RH sing 17 n y C29 C28 8RH doub 18 n y C24 C23 8RH doub 19 n y C21 F35 8RH sing 20 n n C21 C19 8RH doub 21 n y C26 C17 8RH doub 22 n y C28 C17 8RH sing 23 n y C17 C8 8RH sing 24 n n C23 C19 8RH sing 25 n y C19 O18 8RH sing 26 n n C8 N6 8RH sing 27 n y C8 C9 8RH doub 28 n y N5 N6 8RH sing 29 n y N5 C1 8RH doub 30 n y O18 C1 8RH sing 31 n n N6 C4 8RH sing 32 n y C1 C3 8RH sing 33 n y C9 N7 8RH sing 34 n y C4 N7 8RH doub 35 n y C4 C2 8RH sing 36 n y C3 C2 8RH doub 37 n y C2 N10 8RH sing 38 n n N10 C11 8RH sing 39 n n C11 C12 8RH sing 40 n n C12 C13 8RH sing 41 n n F14 C13 8RH sing 42 n n C13 F15 8RH sing 43 n n C13 F16 8RH sing 44 n n C3 H1 8RH sing 45 n n C9 H2 8RH sing 46 n n C11 H3 8RH sing 47 n n C11 H4 8RH sing 48 n n C12 H5 8RH sing 49 n n C12 H6 8RH sing 50 n n C38 H7 8RH sing 51 n n C38 H8 8RH sing 52 n n C38 H9 8RH sing 53 n n C24 H10 8RH sing 54 n n C23 H11 8RH sing 55 n n N10 H12 8RH sing 56 n n C28 H13 8RH sing 57 n n C29 H14 8RH sing 58 n n C30 H15 8RH sing 59 n n C30 H16 8RH sing 60 n n C30 H17 8RH sing 61 n n C26 H18 8RH sing 62 n n N32 H19 8RH sing 63 n n C34 H20 8RH sing 64 n n C42 H21 8RH sing 65 n n C42 H22 8RH sing 66 n n C41 H23 8RH sing 67 n n C41 H24 8RH sing 68 n n # _atom_sites.entry_id 6TND _atom_sites.fract_transf_matrix[1][1] 0.014059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 8RH A 1 901 1017 8RH LIG . C 3 HOH A 1 1001 15 HOH HOH . C 3 HOH A 2 1002 18 HOH HOH . C 3 HOH A 3 1003 36 HOH HOH . C 3 HOH A 4 1004 33 HOH HOH . C 3 HOH A 5 1005 34 HOH HOH . C 3 HOH A 6 1006 8 HOH HOH . C 3 HOH A 7 1007 17 HOH HOH . C 3 HOH A 8 1008 6 HOH HOH . C 3 HOH A 9 1009 40 HOH HOH . C 3 HOH A 10 1010 2 HOH HOH . C 3 HOH A 11 1011 3 HOH HOH . C 3 HOH A 12 1012 21 HOH HOH . C 3 HOH A 13 1013 67 HOH HOH . C 3 HOH A 14 1014 30 HOH HOH . C 3 HOH A 15 1015 25 HOH HOH . C 3 HOH A 16 1016 57 HOH HOH . C 3 HOH A 17 1017 5 HOH HOH . C 3 HOH A 18 1018 7 HOH HOH . C 3 HOH A 19 1019 51 HOH HOH . C 3 HOH A 20 1020 43 HOH HOH . C 3 HOH A 21 1021 47 HOH HOH . C 3 HOH A 22 1022 42 HOH HOH . C 3 HOH A 23 1023 46 HOH HOH . C 3 HOH A 24 1024 14 HOH HOH . C 3 HOH A 25 1025 9 HOH HOH . C 3 HOH A 26 1026 23 HOH HOH . C 3 HOH A 27 1027 76 HOH HOH . C 3 HOH A 28 1028 22 HOH HOH . C 3 HOH A 29 1029 24 HOH HOH . C 3 HOH A 30 1030 1 HOH HOH . C 3 HOH A 31 1031 59 HOH HOH . C 3 HOH A 32 1032 77 HOH HOH . C 3 HOH A 33 1033 31 HOH HOH . C 3 HOH A 34 1034 29 HOH HOH . C 3 HOH A 35 1035 11 HOH HOH . C 3 HOH A 36 1036 16 HOH HOH . C 3 HOH A 37 1037 13 HOH HOH . C 3 HOH A 38 1038 26 HOH HOH . C 3 HOH A 39 1039 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 8RH . . . B 2 -0.15 -17.263 -45.544 1 54.02 ? C1 8RH 901 A 1 HETATM 2 C C2 8RH . . . B 2 -0.995 -18.757 -47.146 1 55.55 ? C2 8RH 901 A 1 HETATM 3 C C3 8RH . . . B 2 -0.898 -17.478 -46.668 1 54.47 ? C3 8RH 901 A 1 HETATM 4 C C8 8RH . . . B 2 0.896 -20.727 -44.877 1 52.77 ? C8 8RH 901 A 1 HETATM 5 C C9 8RH . . . B 2 0.466 -21.697 -45.702 1 49.23 ? C9 8RH 901 A 1 HETATM 6 C C11 8RH . . . B 2 -1.506 -19.476 -49.368 1 67.81 ? C11 8RH 901 A 1 HETATM 7 C C12 8RH . . . B 2 -1.44 -18.257 -50.216 1 67.26 ? C12 8RH 901 A 1 HETATM 8 C C13 8RH . . . B 2 -0.666 -18.696 -51.402 1 67.12 ? C13 8RH 901 A 1 HETATM 9 O O18 8RH . . . B 2 -0.116 -15.963 -45.174 1 57.92 ? O18 8RH 901 A 1 HETATM 10 C C20 8RH . . . B 2 2.527 -15.266 -42.797 1 72.79 ? C20 8RH 901 A 1 HETATM 11 F F36 8RH . . . B 2 3.873 -15.241 -42.743 1 72.26 ? F36 8RH 901 A 1 HETATM 12 C C22 8RH . . . B 2 1.762 -14.96 -41.666 1 67.71 ? C22 8RH 901 A 1 HETATM 13 O O37 8RH . . . B 2 2.38 -14.606 -40.5 1 69.37 ? O37 8RH 901 A 1 HETATM 14 C C38 8RH . . . B 2 1.5 -14.262 -39.376 1 71.23 ? C38 8RH 901 A 1 HETATM 15 C C24 8RH . . . B 2 0.373 -14.982 -41.755 1 61.45 ? C24 8RH 901 A 1 HETATM 16 C C23 8RH . . . B 2 -0.257 -15.34 -42.929 1 55.88 ? C23 8RH 901 A 1 HETATM 17 C C19 8RH . . . B 2 0.506 -15.652 -44.034 1 62.7 ? C19 8RH 901 A 1 HETATM 18 C C21 8RH . . . B 2 1.891 -15.607 -43.993 1 68.09 ? C21 8RH 901 A 1 HETATM 19 F F35 8RH . . . B 2 2.582 -15.907 -45.105 1 61.98 ? F35 8RH 901 A 1 HETATM 20 N N5 8RH . . . B 2 0.464 -18.304 -44.932 1 50.41 ? N5 8RH 901 A 1 HETATM 21 N N6 8RH . . . B 2 0.357 -19.486 -45.333 1 52.31 ? N6 8RH 901 A 1 HETATM 22 N N7 8RH . . . B 2 -0.302 -21.148 -46.669 1 50.26 ? N7 8RH 901 A 1 HETATM 23 C C4 8RH . . . B 2 -0.379 -19.818 -46.484 1 51.87 ? C4 8RH 901 A 1 HETATM 24 N N10 8RH . . . B 2 -1.794 -18.849 -48.159 1 61.6 ? N10 8RH 901 A 1 HETATM 25 F F16 8RH . . . B 2 0.301 -19.587 -51.149 1 68.31 ? F16 8RH 901 A 1 HETATM 26 F F15 8RH . . . B 2 -0.171 -17.527 -51.745 1 63.91 ? F15 8RH 901 A 1 HETATM 27 F F14 8RH . . . B 2 -1.561 -19.315 -52.183 1 69.48 ? F14 8RH 901 A 1 HETATM 28 C C17 8RH . . . B 2 1.682 -20.786 -43.698 1 50.78 ? C17 8RH 901 A 1 HETATM 29 C C28 8RH . . . B 2 1.828 -21.961 -42.982 1 47.2 ? C28 8RH 901 A 1 HETATM 30 C C29 8RH . . . B 2 2.584 -21.946 -41.83 1 50.72 ? C29 8RH 901 A 1 HETATM 31 C C27 8RH . . . B 2 3.142 -20.75 -41.359 1 54.19 ? C27 8RH 901 A 1 HETATM 32 C C25 8RH . . . B 2 2.97 -19.58 -42.053 1 46.14 ? C25 8RH 901 A 1 HETATM 33 C C30 8RH . . . B 2 3.55 -18.248 -41.562 1 45.87 ? C30 8RH 901 A 1 HETATM 34 C C26 8RH . . . B 2 2.223 -19.611 -43.187 1 48.61 ? C26 8RH 901 A 1 HETATM 35 C C31 8RH . . . B 2 3.971 -20.704 -40.061 1 57.1 ? C31 8RH 901 A 1 HETATM 36 O O33 8RH . . . B 2 5.013 -20.075 -40.032 1 56.25 ? O33 8RH 901 A 1 HETATM 37 N N32 8RH . . . B 2 3.442 -21.307 -38.998 1 56.54 ? N32 8RH 901 A 1 HETATM 38 C C34 8RH . . . B 2 4.156 -21.408 -37.707 1 49.25 ? C34 8RH 901 A 1 HETATM 39 C C42 8RH . . . B 2 4.99 -22.689 -37.61 1 47.08 ? C42 8RH 901 A 1 HETATM 40 C C41 8RH . . . B 2 3.704 -22.558 -36.787 1 45.55 ? C41 8RH 901 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 46 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #