data_6TO3 # _model_server_result.job_id pnMMqrPn9Yk-XLeAobmfdg _model_server_result.datetime_utc '2024-10-12 22:13:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6to3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 6TO3 # _exptl.entry_id 6TO3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.551 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 4-chloro-7-nitrobenzofurazan _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TO3 _cell.length_a 104.76 _cell.length_b 104.76 _cell.length_c 79.37 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 39.685 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 120 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 220 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 5Z8 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id 5Z8 _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.795 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H2 Cl N3 O3' _chem_comp.formula_weight 199.551 _chem_comp.id 5Z8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-chloro-7-nitrobenzofurazan _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-chloranyl-7-nitro-2,1,3-benzoxadiazole;NBD-Cl;4-nitro-2,1,3-benzoxadiazole (post-reaction)' # _atom_sites.entry_id 6TO3 _atom_sites.fract_transf_matrix[1][1] 0.009546 _atom_sites.fract_transf_matrix[1][2] 0.005511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012599 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5Z8 AAA 1 501 120 5Z8 CYX . C 3 HOH AAA 1 601 4 HOH HOH . C 3 HOH AAA 2 602 1 HOH HOH . C 3 HOH AAA 3 603 2 HOH HOH . C 3 HOH AAA 4 604 6 HOH HOH . C 3 HOH AAA 5 605 7 HOH HOH . C 3 HOH AAA 6 606 3 HOH HOH . C 3 HOH AAA 7 607 5 HOH HOH . C 3 HOH AAA 8 608 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5Z8 . . . B 2 -17.901 59.606 8.908 1 102.05 ? C1 5Z8 501 AAA 1 HETATM 2 C C2 5Z8 . . . B 2 -18.08 58.41 9.629 1 103.82 ? C2 5Z8 501 AAA 1 HETATM 3 O O3 5Z8 . . . B 2 -16.98 60.518 5.459 1 86.7 ? O3 5Z8 501 AAA 1 HETATM 4 C C4 5Z8 . . . B 2 -17.745 57.159 7.615 1 118.67 ? C4 5Z8 501 AAA 1 HETATM 5 C C5 5Z8 . . . B 2 -17.573 58.338 6.906 1 120.99 ? C5 5Z8 501 AAA 1 HETATM 6 C C6 5Z8 . . . B 2 -17.646 59.562 7.546 1 108.22 ? C6 5Z8 501 AAA 1 HETATM 7 N N1 5Z8 . . . B 2 -18.295 58.773 10.894 1 113.16 ? N1 5Z8 501 AAA 1 HETATM 8 O O1 5Z8 . . . B 2 -18.256 60.191 11.005 1 99.35 ? O1 5Z8 501 AAA 1 HETATM 9 N N2 5Z8 . . . B 2 -18.008 60.657 9.72 1 96.58 ? N2 5Z8 501 AAA 1 HETATM 10 N N3 5Z8 . . . B 2 -17.464 60.662 6.811 1 105.42 ? N3 5Z8 501 AAA 1 HETATM 11 O O2 5Z8 . . . B 2 -17.715 61.961 7.343 1 100.16 ? O2 5Z8 501 AAA 1 HETATM 12 C C3 5Z8 . . . B 2 -17.985 57.16 8.979 1 100.97 ? C3 5Z8 501 AAA 1 HETATM 13 H H4 5Z8 . . . B 2 -17.668 56.375 6.999 1 118.67 ? H4 5Z8 501 AAA 1 HETATM 14 H H5 5Z8 . . . B 2 -17.39 58.472 5.932 1 120.99 ? H5 5Z8 501 AAA 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #