data_6TO7 # _model_server_result.job_id 9RFCcpBW_SVfTkC82JZfZg _model_server_result.datetime_utc '2024-11-05 05:04:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6to7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":421}' # _entry.id 6TO7 # _exptl.entry_id 6TO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 43 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.31 _cell.angle_gamma 90 _cell.entry_id 6TO7 _cell.length_a 57.9 _cell.length_b 158.47 _cell.length_c 183.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,EB 1 1 B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,FB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N ? 5 T N N ? 5 U N N ? 5 V N N ? 5 W N N ? 5 X N N ? 5 Y N N ? 5 Z N N ? 5 AA N N ? 5 HA N N ? 5 IA N N ? 5 JA N N ? 5 KA N N ? 5 LA N N ? 5 MA N N ? 5 NA N N ? 5 OA N N ? 5 PA N N ? 5 QA N N ? 5 RA N N ? 5 SA N N ? 5 TA N N ? 5 UA N N ? 5 VA N N ? 5 WA N N ? 5 XA N N ? 5 YA N N ? 5 ZA N N ? 5 AB N N ? 5 BB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 CA NA NA . A NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc2 A OH TYR 255 A TYR 311 1_555 CA NA NA . A NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 B OD1 ASP 68 B ASP 92 1_555 DB NA NA . B NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 B OH TYR 255 B TYR 311 1_555 DB NA NA . B NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 467 n n C1 S1 SOG sing 468 n n C1 O5 SOG sing 469 n n C1 H1 SOG sing 470 n n C2 C3 SOG sing 471 n n C2 O2 SOG sing 472 n n C2 H2 SOG sing 473 n n C3 C4 SOG sing 474 n n C3 O3 SOG sing 475 n n C3 H3 SOG sing 476 n n C4 C5 SOG sing 477 n n C4 O4 SOG sing 478 n n C4 H4 SOG sing 479 n n C5 C6 SOG sing 480 n n C5 O5 SOG sing 481 n n C5 H5 SOG sing 482 n n C6 O6 SOG sing 483 n n C6 H61 SOG sing 484 n n C6 H62 SOG sing 485 n n C1' C2' SOG sing 486 n n C1' S1 SOG sing 487 n n C1' "H1'1" SOG sing 488 n n C1' "H1'2" SOG sing 489 n n C2' C3' SOG sing 490 n n C2' "H2'1" SOG sing 491 n n C2' "H2'2" SOG sing 492 n n C3' C4' SOG sing 493 n n C3' "H3'1" SOG sing 494 n n C3' "H3'2" SOG sing 495 n n C4' C5' SOG sing 496 n n C4' "H4'1" SOG sing 497 n n C4' "H4'2" SOG sing 498 n n C5' C6' SOG sing 499 n n C5' "H5'1" SOG sing 500 n n C5' "H5'2" SOG sing 501 n n C6' C7' SOG sing 502 n n C6' "H6'1" SOG sing 503 n n C6' "H6'2" SOG sing 504 n n C7' C8' SOG sing 505 n n C7' "H7'1" SOG sing 506 n n C7' "H7'2" SOG sing 507 n n C8' "H8'1" SOG sing 508 n n C8' "H8'2" SOG sing 509 n n C8' "H8'3" SOG sing 510 n n O2 HO2 SOG sing 511 n n O3 HO3 SOG sing 512 n n O4 HO4 SOG sing 513 n n O6 HO6 SOG sing 514 n n # _atom_sites.entry_id 6TO7 _atom_sites.fract_transf_matrix[1][1] 0.017271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001605 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00631 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00547 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SUV A 1 401 401 SUV SUV . D 3 PG4 A 1 402 2 PG4 PG4 . E 4 CIT A 1 403 1 CIT CIT . F 5 SOG A 1 404 4 SOG SOG . G 5 SOG A 1 405 6 SOG SOG . H 5 SOG A 1 406 23 SOG SOG . I 5 SOG A 1 407 24 SOG SOG . J 5 SOG A 1 408 25 SOG SOG . K 5 SOG A 1 409 28 SOG SOG . L 5 SOG A 1 410 30 SOG SOG . M 5 SOG A 1 411 34 SOG SOG . N 5 SOG A 1 412 36 SOG SOG . O 5 SOG A 1 413 38 SOG SOG . P 5 SOG A 1 414 43 SOG SOG . Q 5 SOG A 1 415 44 SOG SOG . R 5 SOG A 1 416 46 SOG SOG . S 5 SOG A 1 417 47 SOG SOG . T 5 SOG A 1 418 53 SOG SOG . U 5 SOG A 1 419 55 SOG SOG . V 5 SOG A 1 420 56 SOG SOG . W 5 SOG A 1 421 57 SOG SOG . X 5 SOG A 1 422 58 SOG SOG . Y 5 SOG A 1 423 59 SOG SOG . Z 5 SOG A 1 424 60 SOG SOG . AA 5 SOG A 1 425 62 SOG SOG . BA 6 PGW A 1 426 2 PGW PGW . CA 7 NA A 1 427 1 NA NA . DA 2 SUV B 1 401 401 SUV SUV . EA 3 PG4 B 1 402 1 PG4 PG4 . FA 3 PG4 B 1 403 3 PG4 PG4 . GA 3 PG4 B 1 404 4 PG4 PG4 . HA 5 SOG B 1 405 1 SOG SOG . IA 5 SOG B 1 406 2 SOG SOG . JA 5 SOG B 1 407 3 SOG SOG . KA 5 SOG B 1 408 7 SOG SOG . LA 5 SOG B 1 409 11 SOG SOG . MA 5 SOG B 1 410 12 SOG SOG . NA 5 SOG B 1 411 14 SOG SOG . OA 5 SOG B 1 412 26 SOG SOG . PA 5 SOG B 1 413 29 SOG SOG . QA 5 SOG B 1 414 31 SOG SOG . RA 5 SOG B 1 415 32 SOG SOG . SA 5 SOG B 1 416 33 SOG SOG . TA 5 SOG B 1 417 37 SOG SOG . UA 5 SOG B 1 418 39 SOG SOG . VA 5 SOG B 1 419 41 SOG SOG . WA 5 SOG B 1 420 42 SOG SOG . XA 5 SOG B 1 421 45 SOG SOG . YA 5 SOG B 1 422 48 SOG SOG . ZA 5 SOG B 1 423 49 SOG SOG . AB 5 SOG B 1 424 54 SOG SOG . BB 5 SOG B 1 425 61 SOG SOG . CB 6 PGW B 1 426 1 PGW PGW . DB 7 NA B 1 427 2 NA NA . EB 8 HOH A 1 501 57 HOH HOH . EB 8 HOH A 2 502 100 HOH HOH . EB 8 HOH A 3 503 60 HOH HOH . EB 8 HOH A 4 504 112 HOH HOH . EB 8 HOH A 5 505 58 HOH HOH . EB 8 HOH A 6 506 66 HOH HOH . EB 8 HOH A 7 507 83 HOH HOH . EB 8 HOH A 8 508 38 HOH HOH . EB 8 HOH A 9 509 34 HOH HOH . EB 8 HOH A 10 510 62 HOH HOH . EB 8 HOH A 11 511 35 HOH HOH . EB 8 HOH A 12 512 43 HOH HOH . EB 8 HOH A 13 513 65 HOH HOH . EB 8 HOH A 14 514 50 HOH HOH . EB 8 HOH A 15 515 54 HOH HOH . EB 8 HOH A 16 516 85 HOH HOH . EB 8 HOH A 17 517 69 HOH HOH . EB 8 HOH A 18 518 133 HOH HOH . EB 8 HOH A 19 519 61 HOH HOH . EB 8 HOH A 20 520 37 HOH HOH . EB 8 HOH A 21 521 49 HOH HOH . EB 8 HOH A 22 522 39 HOH HOH . EB 8 HOH A 23 523 64 HOH HOH . EB 8 HOH A 24 524 88 HOH HOH . EB 8 HOH A 25 525 46 HOH HOH . EB 8 HOH A 26 526 45 HOH HOH . EB 8 HOH A 27 527 99 HOH HOH . EB 8 HOH A 28 528 160 HOH HOH . EB 8 HOH A 29 529 48 HOH HOH . EB 8 HOH A 30 530 173 HOH HOH . EB 8 HOH A 31 531 121 HOH HOH . EB 8 HOH A 32 532 44 HOH HOH . EB 8 HOH A 33 533 68 HOH HOH . EB 8 HOH A 34 534 55 HOH HOH . EB 8 HOH A 35 535 53 HOH HOH . EB 8 HOH A 36 536 52 HOH HOH . EB 8 HOH A 37 537 59 HOH HOH . EB 8 HOH A 38 538 159 HOH HOH . EB 8 HOH A 39 539 51 HOH HOH . EB 8 HOH A 40 540 142 HOH HOH . EB 8 HOH A 41 541 89 HOH HOH . EB 8 HOH A 42 542 131 HOH HOH . EB 8 HOH A 43 543 115 HOH HOH . EB 8 HOH A 44 544 42 HOH HOH . EB 8 HOH A 45 545 47 HOH HOH . EB 8 HOH A 46 546 171 HOH HOH . EB 8 HOH A 47 547 86 HOH HOH . EB 8 HOH A 48 548 120 HOH HOH . EB 8 HOH A 49 549 166 HOH HOH . EB 8 HOH A 50 550 63 HOH HOH . EB 8 HOH A 51 551 79 HOH HOH . EB 8 HOH A 52 552 84 HOH HOH . EB 8 HOH A 53 553 114 HOH HOH . EB 8 HOH A 54 554 40 HOH HOH . EB 8 HOH A 55 555 155 HOH HOH . EB 8 HOH A 56 556 129 HOH HOH . EB 8 HOH A 57 557 170 HOH HOH . EB 8 HOH A 58 558 162 HOH HOH . EB 8 HOH A 59 559 91 HOH HOH . EB 8 HOH A 60 560 105 HOH HOH . EB 8 HOH A 61 561 113 HOH HOH . EB 8 HOH A 62 562 56 HOH HOH . EB 8 HOH A 63 563 152 HOH HOH . EB 8 HOH A 64 564 122 HOH HOH . EB 8 HOH A 65 565 94 HOH HOH . EB 8 HOH A 66 566 165 HOH HOH . EB 8 HOH A 67 567 156 HOH HOH . EB 8 HOH A 68 568 104 HOH HOH . EB 8 HOH A 69 569 98 HOH HOH . EB 8 HOH A 70 570 41 HOH HOH . EB 8 HOH A 71 571 150 HOH HOH . EB 8 HOH A 72 572 67 HOH HOH . EB 8 HOH A 73 573 167 HOH HOH . EB 8 HOH A 74 574 87 HOH HOH . EB 8 HOH A 75 575 161 HOH HOH . EB 8 HOH A 76 576 168 HOH HOH . EB 8 HOH A 77 577 164 HOH HOH . EB 8 HOH A 78 578 36 HOH HOH . EB 8 HOH A 79 579 134 HOH HOH . EB 8 HOH A 80 580 116 HOH HOH . EB 8 HOH A 81 581 169 HOH HOH . EB 8 HOH A 82 582 154 HOH HOH . EB 8 HOH A 83 583 78 HOH HOH . EB 8 HOH A 84 584 163 HOH HOH . FB 8 HOH B 1 501 72 HOH HOH . FB 8 HOH B 2 502 74 HOH HOH . FB 8 HOH B 3 503 18 HOH HOH . FB 8 HOH B 4 504 19 HOH HOH . FB 8 HOH B 5 505 77 HOH HOH . FB 8 HOH B 6 506 33 HOH HOH . FB 8 HOH B 7 507 20 HOH HOH . FB 8 HOH B 8 508 73 HOH HOH . FB 8 HOH B 9 509 111 HOH HOH . FB 8 HOH B 10 510 95 HOH HOH . FB 8 HOH B 11 511 31 HOH HOH . FB 8 HOH B 12 512 23 HOH HOH . FB 8 HOH B 13 513 6 HOH HOH . FB 8 HOH B 14 514 7 HOH HOH . FB 8 HOH B 15 515 8 HOH HOH . FB 8 HOH B 16 516 4 HOH HOH . FB 8 HOH B 17 517 75 HOH HOH . FB 8 HOH B 18 518 139 HOH HOH . FB 8 HOH B 19 519 140 HOH HOH . FB 8 HOH B 20 520 21 HOH HOH . FB 8 HOH B 21 521 110 HOH HOH . FB 8 HOH B 22 522 158 HOH HOH . FB 8 HOH B 23 523 71 HOH HOH . FB 8 HOH B 24 524 130 HOH HOH . FB 8 HOH B 25 525 32 HOH HOH . FB 8 HOH B 26 526 14 HOH HOH . FB 8 HOH B 27 527 15 HOH HOH . FB 8 HOH B 28 528 5 HOH HOH . FB 8 HOH B 29 529 102 HOH HOH . FB 8 HOH B 30 530 127 HOH HOH . FB 8 HOH B 31 531 26 HOH HOH . FB 8 HOH B 32 532 2 HOH HOH . FB 8 HOH B 33 533 172 HOH HOH . FB 8 HOH B 34 534 125 HOH HOH . FB 8 HOH B 35 535 3 HOH HOH . FB 8 HOH B 36 536 1 HOH HOH . FB 8 HOH B 37 537 29 HOH HOH . FB 8 HOH B 38 538 128 HOH HOH . FB 8 HOH B 39 539 144 HOH HOH . FB 8 HOH B 40 540 148 HOH HOH . FB 8 HOH B 41 541 12 HOH HOH . FB 8 HOH B 42 542 153 HOH HOH . FB 8 HOH B 43 543 10 HOH HOH . FB 8 HOH B 44 544 22 HOH HOH . FB 8 HOH B 45 545 70 HOH HOH . FB 8 HOH B 46 546 9 HOH HOH . FB 8 HOH B 47 547 174 HOH HOH . FB 8 HOH B 48 548 13 HOH HOH . FB 8 HOH B 49 549 157 HOH HOH . FB 8 HOH B 50 550 16 HOH HOH . FB 8 HOH B 51 551 30 HOH HOH . FB 8 HOH B 52 552 17 HOH HOH . FB 8 HOH B 53 553 25 HOH HOH . FB 8 HOH B 54 554 149 HOH HOH . FB 8 HOH B 55 555 92 HOH HOH . FB 8 HOH B 56 556 107 HOH HOH . FB 8 HOH B 57 557 76 HOH HOH . FB 8 HOH B 58 558 151 HOH HOH . FB 8 HOH B 59 559 24 HOH HOH . FB 8 HOH B 60 560 27 HOH HOH . FB 8 HOH B 61 561 81 HOH HOH . FB 8 HOH B 62 562 80 HOH HOH . FB 8 HOH B 63 563 108 HOH HOH . FB 8 HOH B 64 564 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' SOG . . . W 5 0.269 -57.421 -30.571 1 74.38 ? C1' SOG 421 A 1 HETATM 2 C C2' SOG . . . W 5 1.102 -56.158 -30.382 1 72.09 ? C2' SOG 421 A 1 HETATM 3 C C3' SOG . . . W 5 0.235 -54.916 -30.198 1 70.61 ? C3' SOG 421 A 1 HETATM 4 C C4' SOG . . . W 5 0.944 -53.861 -29.349 1 68.63 ? C4' SOG 421 A 1 HETATM 5 C C5' SOG . . . W 5 0.18 -53.547 -28.065 1 66.02 ? C5' SOG 421 A 1 HETATM 6 S S1 SOG . . . W 5 0.636 -58.606 -29.313 1 77.19 ? S1 SOG 421 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #