data_6TO7
#
_model_server_result.job_id            Q7tZnQbH9evnQfmtgf7EXg 
_model_server_result.datetime_utc      '2024-11-05 05:02:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6to7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DB","auth_seq_id":427}' 
#
_entry.id    6TO7 
#
_exptl.entry_id    6TO7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.31 
_cell.angle_gamma         90 
_cell.entry_id            6TO7 
_cell.length_a            57.9 
_cell.length_b            158.47 
_cell.length_c            183.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TO7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,EB 1 1 
B,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,FB 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 CA N N 
? 7 DB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 CA NA NA . A NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? 
metalc ? metalc2 A OH TYR 255 A TYR 311 1_555 CA NA NA . A NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc3 B OD1 ASP 68 B ASP 92 1_555 DB NA NA . B NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 B OH TYR 255 B TYR 311 1_555 DB NA NA . B NA 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     6TO7 
_atom_sites.fract_transf_matrix[1][1]    0.017271 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001605 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00547 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SUV A 1 401 401 SUV SUV . 
D 3 PG4 A 1 402 2 PG4 PG4 . 
E 4 CIT A 1 403 1 CIT CIT . 
F 5 SOG A 1 404 4 SOG SOG . 
G 5 SOG A 1 405 6 SOG SOG . 
H 5 SOG A 1 406 23 SOG SOG . 
I 5 SOG A 1 407 24 SOG SOG . 
J 5 SOG A 1 408 25 SOG SOG . 
K 5 SOG A 1 409 28 SOG SOG . 
L 5 SOG A 1 410 30 SOG SOG . 
M 5 SOG A 1 411 34 SOG SOG . 
N 5 SOG A 1 412 36 SOG SOG . 
O 5 SOG A 1 413 38 SOG SOG . 
P 5 SOG A 1 414 43 SOG SOG . 
Q 5 SOG A 1 415 44 SOG SOG . 
R 5 SOG A 1 416 46 SOG SOG . 
S 5 SOG A 1 417 47 SOG SOG . 
T 5 SOG A 1 418 53 SOG SOG . 
U 5 SOG A 1 419 55 SOG SOG . 
V 5 SOG A 1 420 56 SOG SOG . 
W 5 SOG A 1 421 57 SOG SOG . 
X 5 SOG A 1 422 58 SOG SOG . 
Y 5 SOG A 1 423 59 SOG SOG . 
Z 5 SOG A 1 424 60 SOG SOG . 
AA 5 SOG A 1 425 62 SOG SOG . 
BA 6 PGW A 1 426 2 PGW PGW . 
CA 7 NA A 1 427 1 NA NA . 
DA 2 SUV B 1 401 401 SUV SUV . 
EA 3 PG4 B 1 402 1 PG4 PG4 . 
FA 3 PG4 B 1 403 3 PG4 PG4 . 
GA 3 PG4 B 1 404 4 PG4 PG4 . 
HA 5 SOG B 1 405 1 SOG SOG . 
IA 5 SOG B 1 406 2 SOG SOG . 
JA 5 SOG B 1 407 3 SOG SOG . 
KA 5 SOG B 1 408 7 SOG SOG . 
LA 5 SOG B 1 409 11 SOG SOG . 
MA 5 SOG B 1 410 12 SOG SOG . 
NA 5 SOG B 1 411 14 SOG SOG . 
OA 5 SOG B 1 412 26 SOG SOG . 
PA 5 SOG B 1 413 29 SOG SOG . 
QA 5 SOG B 1 414 31 SOG SOG . 
RA 5 SOG B 1 415 32 SOG SOG . 
SA 5 SOG B 1 416 33 SOG SOG . 
TA 5 SOG B 1 417 37 SOG SOG . 
UA 5 SOG B 1 418 39 SOG SOG . 
VA 5 SOG B 1 419 41 SOG SOG . 
WA 5 SOG B 1 420 42 SOG SOG . 
XA 5 SOG B 1 421 45 SOG SOG . 
YA 5 SOG B 1 422 48 SOG SOG . 
ZA 5 SOG B 1 423 49 SOG SOG . 
AB 5 SOG B 1 424 54 SOG SOG . 
BB 5 SOG B 1 425 61 SOG SOG . 
CB 6 PGW B 1 426 1 PGW PGW . 
DB 7 NA B 1 427 2 NA NA . 
EB 8 HOH A 1 501 57 HOH HOH . 
EB 8 HOH A 2 502 100 HOH HOH . 
EB 8 HOH A 3 503 60 HOH HOH . 
EB 8 HOH A 4 504 112 HOH HOH . 
EB 8 HOH A 5 505 58 HOH HOH . 
EB 8 HOH A 6 506 66 HOH HOH . 
EB 8 HOH A 7 507 83 HOH HOH . 
EB 8 HOH A 8 508 38 HOH HOH . 
EB 8 HOH A 9 509 34 HOH HOH . 
EB 8 HOH A 10 510 62 HOH HOH . 
EB 8 HOH A 11 511 35 HOH HOH . 
EB 8 HOH A 12 512 43 HOH HOH . 
EB 8 HOH A 13 513 65 HOH HOH . 
EB 8 HOH A 14 514 50 HOH HOH . 
EB 8 HOH A 15 515 54 HOH HOH . 
EB 8 HOH A 16 516 85 HOH HOH . 
EB 8 HOH A 17 517 69 HOH HOH . 
EB 8 HOH A 18 518 133 HOH HOH . 
EB 8 HOH A 19 519 61 HOH HOH . 
EB 8 HOH A 20 520 37 HOH HOH . 
EB 8 HOH A 21 521 49 HOH HOH . 
EB 8 HOH A 22 522 39 HOH HOH . 
EB 8 HOH A 23 523 64 HOH HOH . 
EB 8 HOH A 24 524 88 HOH HOH . 
EB 8 HOH A 25 525 46 HOH HOH . 
EB 8 HOH A 26 526 45 HOH HOH . 
EB 8 HOH A 27 527 99 HOH HOH . 
EB 8 HOH A 28 528 160 HOH HOH . 
EB 8 HOH A 29 529 48 HOH HOH . 
EB 8 HOH A 30 530 173 HOH HOH . 
EB 8 HOH A 31 531 121 HOH HOH . 
EB 8 HOH A 32 532 44 HOH HOH . 
EB 8 HOH A 33 533 68 HOH HOH . 
EB 8 HOH A 34 534 55 HOH HOH . 
EB 8 HOH A 35 535 53 HOH HOH . 
EB 8 HOH A 36 536 52 HOH HOH . 
EB 8 HOH A 37 537 59 HOH HOH . 
EB 8 HOH A 38 538 159 HOH HOH . 
EB 8 HOH A 39 539 51 HOH HOH . 
EB 8 HOH A 40 540 142 HOH HOH . 
EB 8 HOH A 41 541 89 HOH HOH . 
EB 8 HOH A 42 542 131 HOH HOH . 
EB 8 HOH A 43 543 115 HOH HOH . 
EB 8 HOH A 44 544 42 HOH HOH . 
EB 8 HOH A 45 545 47 HOH HOH . 
EB 8 HOH A 46 546 171 HOH HOH . 
EB 8 HOH A 47 547 86 HOH HOH . 
EB 8 HOH A 48 548 120 HOH HOH . 
EB 8 HOH A 49 549 166 HOH HOH . 
EB 8 HOH A 50 550 63 HOH HOH . 
EB 8 HOH A 51 551 79 HOH HOH . 
EB 8 HOH A 52 552 84 HOH HOH . 
EB 8 HOH A 53 553 114 HOH HOH . 
EB 8 HOH A 54 554 40 HOH HOH . 
EB 8 HOH A 55 555 155 HOH HOH . 
EB 8 HOH A 56 556 129 HOH HOH . 
EB 8 HOH A 57 557 170 HOH HOH . 
EB 8 HOH A 58 558 162 HOH HOH . 
EB 8 HOH A 59 559 91 HOH HOH . 
EB 8 HOH A 60 560 105 HOH HOH . 
EB 8 HOH A 61 561 113 HOH HOH . 
EB 8 HOH A 62 562 56 HOH HOH . 
EB 8 HOH A 63 563 152 HOH HOH . 
EB 8 HOH A 64 564 122 HOH HOH . 
EB 8 HOH A 65 565 94 HOH HOH . 
EB 8 HOH A 66 566 165 HOH HOH . 
EB 8 HOH A 67 567 156 HOH HOH . 
EB 8 HOH A 68 568 104 HOH HOH . 
EB 8 HOH A 69 569 98 HOH HOH . 
EB 8 HOH A 70 570 41 HOH HOH . 
EB 8 HOH A 71 571 150 HOH HOH . 
EB 8 HOH A 72 572 67 HOH HOH . 
EB 8 HOH A 73 573 167 HOH HOH . 
EB 8 HOH A 74 574 87 HOH HOH . 
EB 8 HOH A 75 575 161 HOH HOH . 
EB 8 HOH A 76 576 168 HOH HOH . 
EB 8 HOH A 77 577 164 HOH HOH . 
EB 8 HOH A 78 578 36 HOH HOH . 
EB 8 HOH A 79 579 134 HOH HOH . 
EB 8 HOH A 80 580 116 HOH HOH . 
EB 8 HOH A 81 581 169 HOH HOH . 
EB 8 HOH A 82 582 154 HOH HOH . 
EB 8 HOH A 83 583 78 HOH HOH . 
EB 8 HOH A 84 584 163 HOH HOH . 
FB 8 HOH B 1 501 72 HOH HOH . 
FB 8 HOH B 2 502 74 HOH HOH . 
FB 8 HOH B 3 503 18 HOH HOH . 
FB 8 HOH B 4 504 19 HOH HOH . 
FB 8 HOH B 5 505 77 HOH HOH . 
FB 8 HOH B 6 506 33 HOH HOH . 
FB 8 HOH B 7 507 20 HOH HOH . 
FB 8 HOH B 8 508 73 HOH HOH . 
FB 8 HOH B 9 509 111 HOH HOH . 
FB 8 HOH B 10 510 95 HOH HOH . 
FB 8 HOH B 11 511 31 HOH HOH . 
FB 8 HOH B 12 512 23 HOH HOH . 
FB 8 HOH B 13 513 6 HOH HOH . 
FB 8 HOH B 14 514 7 HOH HOH . 
FB 8 HOH B 15 515 8 HOH HOH . 
FB 8 HOH B 16 516 4 HOH HOH . 
FB 8 HOH B 17 517 75 HOH HOH . 
FB 8 HOH B 18 518 139 HOH HOH . 
FB 8 HOH B 19 519 140 HOH HOH . 
FB 8 HOH B 20 520 21 HOH HOH . 
FB 8 HOH B 21 521 110 HOH HOH . 
FB 8 HOH B 22 522 158 HOH HOH . 
FB 8 HOH B 23 523 71 HOH HOH . 
FB 8 HOH B 24 524 130 HOH HOH . 
FB 8 HOH B 25 525 32 HOH HOH . 
FB 8 HOH B 26 526 14 HOH HOH . 
FB 8 HOH B 27 527 15 HOH HOH . 
FB 8 HOH B 28 528 5 HOH HOH . 
FB 8 HOH B 29 529 102 HOH HOH . 
FB 8 HOH B 30 530 127 HOH HOH . 
FB 8 HOH B 31 531 26 HOH HOH . 
FB 8 HOH B 32 532 2 HOH HOH . 
FB 8 HOH B 33 533 172 HOH HOH . 
FB 8 HOH B 34 534 125 HOH HOH . 
FB 8 HOH B 35 535 3 HOH HOH . 
FB 8 HOH B 36 536 1 HOH HOH . 
FB 8 HOH B 37 537 29 HOH HOH . 
FB 8 HOH B 38 538 128 HOH HOH . 
FB 8 HOH B 39 539 144 HOH HOH . 
FB 8 HOH B 40 540 148 HOH HOH . 
FB 8 HOH B 41 541 12 HOH HOH . 
FB 8 HOH B 42 542 153 HOH HOH . 
FB 8 HOH B 43 543 10 HOH HOH . 
FB 8 HOH B 44 544 22 HOH HOH . 
FB 8 HOH B 45 545 70 HOH HOH . 
FB 8 HOH B 46 546 9 HOH HOH . 
FB 8 HOH B 47 547 174 HOH HOH . 
FB 8 HOH B 48 548 13 HOH HOH . 
FB 8 HOH B 49 549 157 HOH HOH . 
FB 8 HOH B 50 550 16 HOH HOH . 
FB 8 HOH B 51 551 30 HOH HOH . 
FB 8 HOH B 52 552 17 HOH HOH . 
FB 8 HOH B 53 553 25 HOH HOH . 
FB 8 HOH B 54 554 149 HOH HOH . 
FB 8 HOH B 55 555 92 HOH HOH . 
FB 8 HOH B 56 556 107 HOH HOH . 
FB 8 HOH B 57 557 76 HOH HOH . 
FB 8 HOH B 58 558 151 HOH HOH . 
FB 8 HOH B 59 559 24 HOH HOH . 
FB 8 HOH B 60 560 27 HOH HOH . 
FB 8 HOH B 61 561 81 HOH HOH . 
FB 8 HOH B 62 562 80 HOH HOH . 
FB 8 HOH B 63 563 108 HOH HOH . 
FB 8 HOH B 64 564 11 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         DB 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               -28.164 
_atom_site.Cartn_y               -29.829 
_atom_site.Cartn_z               -40.093 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.56 
_atom_site.pdbx_formal_charge    1 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           427 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#