data_6TOD # _model_server_result.job_id 9bj0y7q6vQZcq2wnGw-wFw _model_server_result.datetime_utc '2024-10-10 05:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LB","auth_seq_id":432}' # _entry.id 6TOD # _exptl.entry_id 6TOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.77 _cell.angle_gamma 90 _cell.entry_id 6TOD _cell.length_a 57.907 _cell.length_b 158.891 _cell.length_c 182.354 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,MB 1 1 B,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,NB 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 FA N N ? 8 LB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 FA NA NA . A NA 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc2 A OH TYR 255 A TYR 311 1_555 FA NA NA . A NA 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc3 A OD1 ASN 294 A ASN 350 1_555 FA NA NA . A NA 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc4 B OD1 ASP 68 B ASP 92 1_555 LB NA NA . B NA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.626 ? metalc ? metalc5 B OH TYR 255 B TYR 311 1_555 LB NA NA . B NA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc6 B OD1 ASN 294 B ASN 350 1_555 LB NA NA . B NA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6TOD _atom_sites.fract_transf_matrix[1][1] 0.017269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006294 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005512 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 7MA A 1 401 401 7MA 7MA . D 3 SO4 A 1 402 2 SO4 SO4 . E 4 PG4 A 1 403 2 PG4 PG4 . F 4 PG4 A 1 404 3 PG4 PG4 . G 4 PG4 A 1 405 4 PG4 PG4 . H 5 CIT A 1 406 1 CIT CIT . I 6 SOG A 1 407 4 SOG SOG . J 6 SOG A 1 408 5 SOG SOG . K 6 SOG A 1 409 6 SOG SOG . L 6 SOG A 1 410 7 SOG SOG . M 6 SOG A 1 411 8 SOG SOG . N 6 SOG A 1 412 13 SOG SOG . O 6 SOG A 1 413 15 SOG SOG . P 6 SOG A 1 414 16 SOG SOG . Q 6 SOG A 1 415 18 SOG SOG . R 6 SOG A 1 416 19 SOG SOG . S 6 SOG A 1 417 21 SOG SOG . T 6 SOG A 1 418 22 SOG SOG . U 6 SOG A 1 419 40 SOG SOG . V 6 SOG A 1 420 41 SOG SOG . W 6 SOG A 1 421 43 SOG SOG . X 6 SOG A 1 422 44 SOG SOG . Y 6 SOG A 1 423 45 SOG SOG . Z 6 SOG A 1 424 46 SOG SOG . AA 6 SOG A 1 425 47 SOG SOG . BA 6 SOG A 1 426 48 SOG SOG . CA 6 SOG A 1 427 52 SOG SOG . DA 6 SOG A 1 428 53 SOG SOG . EA 7 PGW A 1 429 2 PGW PGW . FA 8 NA A 1 430 1 NA NA . GA 2 7MA B 1 401 401 7MA 7MA . HA 3 SO4 B 1 402 3 SO4 SO4 . IA 3 SO4 B 1 403 4 SO4 SO4 . JA 4 PG4 B 1 404 1 PG4 PG4 . KA 4 PG4 B 1 405 5 PG4 PG4 . LA 6 SOG B 1 406 1 SOG SOG . MA 6 SOG B 1 407 2 SOG SOG . NA 6 SOG B 1 408 3 SOG SOG . OA 6 SOG B 1 409 9 SOG SOG . PA 6 SOG B 1 410 11 SOG SOG . QA 6 SOG B 1 411 12 SOG SOG . RA 6 SOG B 1 412 14 SOG SOG . SA 6 SOG B 1 413 17 SOG SOG . TA 6 SOG B 1 414 20 SOG SOG . UA 6 SOG B 1 415 23 SOG SOG . VA 6 SOG B 1 416 24 SOG SOG . WA 6 SOG B 1 417 25 SOG SOG . XA 6 SOG B 1 418 26 SOG SOG . YA 6 SOG B 1 419 29 SOG SOG . ZA 6 SOG B 1 420 30 SOG SOG . AB 6 SOG B 1 421 31 SOG SOG . BB 6 SOG B 1 422 32 SOG SOG . CB 6 SOG B 1 423 33 SOG SOG . DB 6 SOG B 1 424 34 SOG SOG . EB 6 SOG B 1 425 35 SOG SOG . FB 6 SOG B 1 426 36 SOG SOG . GB 6 SOG B 1 427 38 SOG SOG . HB 6 SOG B 1 428 39 SOG SOG . IB 6 SOG B 1 429 42 SOG SOG . JB 6 SOG B 1 430 51 SOG SOG . KB 7 PGW B 1 431 1 PGW PGW . LB 8 NA B 1 432 2 NA NA . MB 9 HOH A 1 501 103 HOH HOH . MB 9 HOH A 2 502 53 HOH HOH . MB 9 HOH A 3 503 50 HOH HOH . MB 9 HOH A 4 504 63 HOH HOH . MB 9 HOH A 5 505 45 HOH HOH . MB 9 HOH A 6 506 80 HOH HOH . MB 9 HOH A 7 507 6 HOH HOH . MB 9 HOH A 8 508 134 HOH HOH . MB 9 HOH A 9 509 16 HOH HOH . MB 9 HOH A 10 510 74 HOH HOH . MB 9 HOH A 11 511 3 HOH HOH . MB 9 HOH A 12 512 43 HOH HOH . MB 9 HOH A 13 513 57 HOH HOH . MB 9 HOH A 14 514 143 HOH HOH . MB 9 HOH A 15 515 11 HOH HOH . MB 9 HOH A 16 516 42 HOH HOH . MB 9 HOH A 17 517 14 HOH HOH . MB 9 HOH A 18 518 119 HOH HOH . MB 9 HOH A 19 519 210 HOH HOH . MB 9 HOH A 20 520 52 HOH HOH . MB 9 HOH A 21 521 12 HOH HOH . MB 9 HOH A 22 522 75 HOH HOH . MB 9 HOH A 23 523 153 HOH HOH . MB 9 HOH A 24 524 46 HOH HOH . MB 9 HOH A 25 525 15 HOH HOH . MB 9 HOH A 26 526 198 HOH HOH . MB 9 HOH A 27 527 151 HOH HOH . MB 9 HOH A 28 528 41 HOH HOH . MB 9 HOH A 29 529 19 HOH HOH . MB 9 HOH A 30 530 88 HOH HOH . MB 9 HOH A 31 531 55 HOH HOH . MB 9 HOH A 32 532 13 HOH HOH . MB 9 HOH A 33 533 194 HOH HOH . MB 9 HOH A 34 534 73 HOH HOH . MB 9 HOH A 35 535 66 HOH HOH . MB 9 HOH A 36 536 106 HOH HOH . MB 9 HOH A 37 537 112 HOH HOH . MB 9 HOH A 38 538 167 HOH HOH . MB 9 HOH A 39 539 20 HOH HOH . MB 9 HOH A 40 540 168 HOH HOH . MB 9 HOH A 41 541 56 HOH HOH . MB 9 HOH A 42 542 18 HOH HOH . MB 9 HOH A 43 543 47 HOH HOH . MB 9 HOH A 44 544 142 HOH HOH . MB 9 HOH A 45 545 122 HOH HOH . MB 9 HOH A 46 546 111 HOH HOH . MB 9 HOH A 47 547 31 HOH HOH . MB 9 HOH A 48 548 105 HOH HOH . MB 9 HOH A 49 549 59 HOH HOH . MB 9 HOH A 50 550 78 HOH HOH . MB 9 HOH A 51 551 49 HOH HOH . MB 9 HOH A 52 552 171 HOH HOH . MB 9 HOH A 53 553 133 HOH HOH . MB 9 HOH A 54 554 36 HOH HOH . MB 9 HOH A 55 555 220 HOH HOH . MB 9 HOH A 56 556 199 HOH HOH . MB 9 HOH A 57 557 116 HOH HOH . MB 9 HOH A 58 558 150 HOH HOH . MB 9 HOH A 59 559 145 HOH HOH . MB 9 HOH A 60 560 200 HOH HOH . MB 9 HOH A 61 561 22 HOH HOH . MB 9 HOH A 62 562 70 HOH HOH . MB 9 HOH A 63 563 8 HOH HOH . MB 9 HOH A 64 564 91 HOH HOH . MB 9 HOH A 65 565 17 HOH HOH . MB 9 HOH A 66 566 120 HOH HOH . MB 9 HOH A 67 567 164 HOH HOH . MB 9 HOH A 68 568 154 HOH HOH . MB 9 HOH A 69 569 188 HOH HOH . MB 9 HOH A 70 570 71 HOH HOH . MB 9 HOH A 71 571 1 HOH HOH . MB 9 HOH A 72 572 90 HOH HOH . MB 9 HOH A 73 573 191 HOH HOH . MB 9 HOH A 74 574 108 HOH HOH . MB 9 HOH A 75 575 121 HOH HOH . MB 9 HOH A 76 576 147 HOH HOH . MB 9 HOH A 77 577 185 HOH HOH . MB 9 HOH A 78 578 149 HOH HOH . MB 9 HOH A 79 579 192 HOH HOH . MB 9 HOH A 80 580 5 HOH HOH . MB 9 HOH A 81 581 186 HOH HOH . MB 9 HOH A 82 582 219 HOH HOH . MB 9 HOH A 83 583 144 HOH HOH . MB 9 HOH A 84 584 118 HOH HOH . MB 9 HOH A 85 585 165 HOH HOH . MB 9 HOH A 86 586 177 HOH HOH . MB 9 HOH A 87 587 193 HOH HOH . MB 9 HOH A 88 588 135 HOH HOH . MB 9 HOH A 89 589 187 HOH HOH . MB 9 HOH A 90 590 146 HOH HOH . MB 9 HOH A 91 591 221 HOH HOH . MB 9 HOH A 92 592 54 HOH HOH . MB 9 HOH A 93 593 104 HOH HOH . MB 9 HOH A 94 594 170 HOH HOH . MB 9 HOH A 95 595 173 HOH HOH . MB 9 HOH A 96 596 166 HOH HOH . MB 9 HOH A 97 597 201 HOH HOH . MB 9 HOH A 98 598 152 HOH HOH . MB 9 HOH A 99 599 189 HOH HOH . MB 9 HOH A 100 600 172 HOH HOH . MB 9 HOH A 101 601 155 HOH HOH . MB 9 HOH A 102 602 76 HOH HOH . MB 9 HOH A 103 603 132 HOH HOH . MB 9 HOH A 104 604 190 HOH HOH . MB 9 HOH A 105 605 39 HOH HOH . MB 9 HOH A 106 606 169 HOH HOH . MB 9 HOH A 107 607 197 HOH HOH . MB 9 HOH A 108 608 196 HOH HOH . MB 9 HOH A 109 609 148 HOH HOH . MB 9 HOH A 110 610 216 HOH HOH . NB 9 HOH B 1 501 44 HOH HOH . NB 9 HOH B 2 502 61 HOH HOH . NB 9 HOH B 3 503 4 HOH HOH . NB 9 HOH B 4 504 100 HOH HOH . NB 9 HOH B 5 505 28 HOH HOH . NB 9 HOH B 6 506 94 HOH HOH . NB 9 HOH B 7 507 2 HOH HOH . NB 9 HOH B 8 508 37 HOH HOH . NB 9 HOH B 9 509 131 HOH HOH . NB 9 HOH B 10 510 69 HOH HOH . NB 9 HOH B 11 511 82 HOH HOH . NB 9 HOH B 12 512 23 HOH HOH . NB 9 HOH B 13 513 30 HOH HOH . NB 9 HOH B 14 514 101 HOH HOH . NB 9 HOH B 15 515 98 HOH HOH . NB 9 HOH B 16 516 174 HOH HOH . NB 9 HOH B 17 517 60 HOH HOH . NB 9 HOH B 18 518 125 HOH HOH . NB 9 HOH B 19 519 65 HOH HOH . NB 9 HOH B 20 520 7 HOH HOH . NB 9 HOH B 21 521 163 HOH HOH . NB 9 HOH B 22 522 113 HOH HOH . NB 9 HOH B 23 523 85 HOH HOH . NB 9 HOH B 24 524 87 HOH HOH . NB 9 HOH B 25 525 26 HOH HOH . NB 9 HOH B 26 526 48 HOH HOH . NB 9 HOH B 27 527 162 HOH HOH . NB 9 HOH B 28 528 115 HOH HOH . NB 9 HOH B 29 529 139 HOH HOH . NB 9 HOH B 30 530 213 HOH HOH . NB 9 HOH B 31 531 93 HOH HOH . NB 9 HOH B 32 532 180 HOH HOH . NB 9 HOH B 33 533 127 HOH HOH . NB 9 HOH B 34 534 62 HOH HOH . NB 9 HOH B 35 535 207 HOH HOH . NB 9 HOH B 36 536 81 HOH HOH . NB 9 HOH B 37 537 109 HOH HOH . NB 9 HOH B 38 538 176 HOH HOH . NB 9 HOH B 39 539 25 HOH HOH . NB 9 HOH B 40 540 181 HOH HOH . NB 9 HOH B 41 541 84 HOH HOH . NB 9 HOH B 42 542 102 HOH HOH . NB 9 HOH B 43 543 10 HOH HOH . NB 9 HOH B 44 544 27 HOH HOH . NB 9 HOH B 45 545 136 HOH HOH . NB 9 HOH B 46 546 95 HOH HOH . NB 9 HOH B 47 547 24 HOH HOH . NB 9 HOH B 48 548 129 HOH HOH . NB 9 HOH B 49 549 38 HOH HOH . NB 9 HOH B 50 550 51 HOH HOH . NB 9 HOH B 51 551 178 HOH HOH . NB 9 HOH B 52 552 205 HOH HOH . NB 9 HOH B 53 553 35 HOH HOH . NB 9 HOH B 54 554 58 HOH HOH . NB 9 HOH B 55 555 92 HOH HOH . NB 9 HOH B 56 556 96 HOH HOH . NB 9 HOH B 57 557 34 HOH HOH . NB 9 HOH B 58 558 64 HOH HOH . NB 9 HOH B 59 559 202 HOH HOH . NB 9 HOH B 60 560 179 HOH HOH . NB 9 HOH B 61 561 21 HOH HOH . NB 9 HOH B 62 562 124 HOH HOH . NB 9 HOH B 63 563 117 HOH HOH . NB 9 HOH B 64 564 32 HOH HOH . NB 9 HOH B 65 565 83 HOH HOH . NB 9 HOH B 66 566 138 HOH HOH . NB 9 HOH B 67 567 40 HOH HOH . NB 9 HOH B 68 568 212 HOH HOH . NB 9 HOH B 69 569 195 HOH HOH . NB 9 HOH B 70 570 9 HOH HOH . NB 9 HOH B 71 571 79 HOH HOH . NB 9 HOH B 72 572 203 HOH HOH . NB 9 HOH B 73 573 160 HOH HOH . NB 9 HOH B 74 574 211 HOH HOH . NB 9 HOH B 75 575 140 HOH HOH . NB 9 HOH B 76 576 183 HOH HOH . NB 9 HOH B 77 577 182 HOH HOH . NB 9 HOH B 78 578 114 HOH HOH . NB 9 HOH B 79 579 110 HOH HOH . NB 9 HOH B 80 580 208 HOH HOH . NB 9 HOH B 81 581 209 HOH HOH . NB 9 HOH B 82 582 137 HOH HOH . NB 9 HOH B 83 583 67 HOH HOH . NB 9 HOH B 84 584 175 HOH HOH . NB 9 HOH B 85 585 158 HOH HOH . NB 9 HOH B 86 586 97 HOH HOH . NB 9 HOH B 87 587 161 HOH HOH . NB 9 HOH B 88 588 77 HOH HOH . NB 9 HOH B 89 589 126 HOH HOH . NB 9 HOH B 90 590 72 HOH HOH . NB 9 HOH B 91 591 159 HOH HOH . NB 9 HOH B 92 592 33 HOH HOH . NB 9 HOH B 93 593 29 HOH HOH . NB 9 HOH B 94 594 184 HOH HOH . NB 9 HOH B 95 595 141 HOH HOH . NB 9 HOH B 96 596 86 HOH HOH . NB 9 HOH B 97 597 89 HOH HOH . NB 9 HOH B 98 598 68 HOH HOH . NB 9 HOH B 99 599 99 HOH HOH . NB 9 HOH B 100 600 107 HOH HOH . NB 9 HOH B 101 601 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id LB _atom_site.label_entity_id 8 _atom_site.Cartn_x 28.128 _atom_site.Cartn_y 30.176 _atom_site.Cartn_z 39.985 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 45.25 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 432 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #