data_6TOF # _model_server_result.job_id rsKRBUtUthPiZI2KFSyC8g _model_server_result.datetime_utc '2024-11-14 04:54:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6TOF # _exptl.entry_id 6TOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 279.297 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)amino]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOF _cell.length_a 66.222 _cell.length_b 66.222 _cell.length_c 151.27 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_554 -y,-x,-z-1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 0 0 -25.211667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H13 N5 O' _chem_comp.formula_weight 279.297 _chem_comp.id NQE _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)amino]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 NQE doub 246 n y C11 C10 NQE sing 247 n y C12 C13 NQE sing 248 n y C10 N3 NQE doub 249 n y C13 C14 NQE sing 250 n n C13 C9 NQE doub 251 n y N3 C9 NQE sing 252 n y C14 N4 NQE trip 253 n n C9 N2 NQE sing 254 n n N2 C5 NQE sing 255 n n C5 C6 NQE doub 256 n y C5 C4 NQE sing 257 n y C6 C7 NQE sing 258 n y C4 C3 NQE doub 259 n y C7 C8 NQE doub 260 n y C3 C8 NQE sing 261 n y C3 N1 NQE sing 262 n n C8 N NQE sing 263 n n N1 C2 NQE sing 264 n n N1 C1 NQE sing 265 n n N C NQE sing 266 n n N C1 NQE sing 267 n n C1 O NQE doub 268 n n C2 H1 NQE sing 269 n n C2 H2 NQE sing 270 n n C2 H3 NQE sing 271 n n C4 H4 NQE sing 272 n n C6 H5 NQE sing 273 n n C7 H6 NQE sing 274 n n C10 H7 NQE sing 275 n n C12 H8 NQE sing 276 n n C11 H9 NQE sing 277 n n N2 H10 NQE sing 278 n n C H11 NQE sing 279 n n C H12 NQE sing 280 n n C H13 NQE sing 281 n n # _atom_sites.entry_id 6TOF _atom_sites.fract_transf_matrix[1][1] 0.015101 _atom_sites.fract_transf_matrix[1][2] 0.008718 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006611 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NQE A 1 201 200 NQE 795 . D 4 EDO A 1 202 1 EDO EDO . E 4 EDO A 1 203 4 EDO EDO . F 4 EDO A 1 204 5 EDO EDO . G 4 EDO A 1 205 6 EDO EDO . H 5 HOH A 1 301 109 HOH HOH . H 5 HOH A 2 302 151 HOH HOH . H 5 HOH A 3 303 142 HOH HOH . H 5 HOH A 4 304 106 HOH HOH . H 5 HOH A 5 305 105 HOH HOH . H 5 HOH A 6 306 107 HOH HOH . H 5 HOH A 7 307 86 HOH HOH . H 5 HOH A 8 308 122 HOH HOH . H 5 HOH A 9 309 73 HOH HOH . H 5 HOH A 10 310 20 HOH HOH . H 5 HOH A 11 311 99 HOH HOH . H 5 HOH A 12 312 54 HOH HOH . H 5 HOH A 13 313 40 HOH HOH . H 5 HOH A 14 314 16 HOH HOH . H 5 HOH A 15 315 59 HOH HOH . H 5 HOH A 16 316 136 HOH HOH . H 5 HOH A 17 317 96 HOH HOH . H 5 HOH A 18 318 39 HOH HOH . H 5 HOH A 19 319 90 HOH HOH . H 5 HOH A 20 320 57 HOH HOH . H 5 HOH A 21 321 48 HOH HOH . H 5 HOH A 22 322 32 HOH HOH . H 5 HOH A 23 323 17 HOH HOH . H 5 HOH A 24 324 42 HOH HOH . H 5 HOH A 25 325 97 HOH HOH . H 5 HOH A 26 326 74 HOH HOH . H 5 HOH A 27 327 165 HOH HOH . H 5 HOH A 28 328 27 HOH HOH . H 5 HOH A 29 329 134 HOH HOH . H 5 HOH A 30 330 125 HOH HOH . H 5 HOH A 31 331 5 HOH HOH . H 5 HOH A 32 332 80 HOH HOH . H 5 HOH A 33 333 139 HOH HOH . H 5 HOH A 34 334 103 HOH HOH . H 5 HOH A 35 335 123 HOH HOH . H 5 HOH A 36 336 72 HOH HOH . H 5 HOH A 37 337 126 HOH HOH . H 5 HOH A 38 338 33 HOH HOH . H 5 HOH A 39 339 79 HOH HOH . H 5 HOH A 40 340 36 HOH HOH . H 5 HOH A 41 341 23 HOH HOH . H 5 HOH A 42 342 26 HOH HOH . H 5 HOH A 43 343 56 HOH HOH . H 5 HOH A 44 344 104 HOH HOH . H 5 HOH A 45 345 144 HOH HOH . H 5 HOH A 46 346 170 HOH HOH . H 5 HOH A 47 347 9 HOH HOH . H 5 HOH A 48 348 158 HOH HOH . H 5 HOH A 49 349 65 HOH HOH . H 5 HOH A 50 350 111 HOH HOH . H 5 HOH A 51 351 10 HOH HOH . H 5 HOH A 52 352 124 HOH HOH . H 5 HOH A 53 353 166 HOH HOH . H 5 HOH A 54 354 66 HOH HOH . H 5 HOH A 55 355 62 HOH HOH . H 5 HOH A 56 356 135 HOH HOH . H 5 HOH A 57 357 21 HOH HOH . H 5 HOH A 58 358 118 HOH HOH . H 5 HOH A 59 359 77 HOH HOH . H 5 HOH A 60 360 69 HOH HOH . H 5 HOH A 61 361 37 HOH HOH . H 5 HOH A 62 362 41 HOH HOH . H 5 HOH A 63 363 2 HOH HOH . H 5 HOH A 64 364 169 HOH HOH . H 5 HOH A 65 365 12 HOH HOH . H 5 HOH A 66 366 115 HOH HOH . H 5 HOH A 67 367 31 HOH HOH . H 5 HOH A 68 368 116 HOH HOH . H 5 HOH A 69 369 140 HOH HOH . H 5 HOH A 70 370 64 HOH HOH . H 5 HOH A 71 371 35 HOH HOH . H 5 HOH A 72 372 120 HOH HOH . H 5 HOH A 73 373 100 HOH HOH . H 5 HOH A 74 374 43 HOH HOH . H 5 HOH A 75 375 28 HOH HOH . H 5 HOH A 76 376 98 HOH HOH . H 5 HOH A 77 377 50 HOH HOH . H 5 HOH A 78 378 60 HOH HOH . H 5 HOH A 79 379 63 HOH HOH . H 5 HOH A 80 380 149 HOH HOH . H 5 HOH A 81 381 25 HOH HOH . H 5 HOH A 82 382 70 HOH HOH . H 5 HOH A 83 383 52 HOH HOH . H 5 HOH A 84 384 155 HOH HOH . H 5 HOH A 85 385 127 HOH HOH . H 5 HOH A 86 386 129 HOH HOH . H 5 HOH A 87 387 117 HOH HOH . H 5 HOH A 88 388 154 HOH HOH . H 5 HOH A 89 389 138 HOH HOH . H 5 HOH A 90 390 137 HOH HOH . H 5 HOH A 91 391 157 HOH HOH . H 5 HOH A 92 392 163 HOH HOH . H 5 HOH A 93 393 147 HOH HOH . H 5 HOH A 94 394 130 HOH HOH . H 5 HOH A 95 395 145 HOH HOH . H 5 HOH A 96 396 14 HOH HOH . H 5 HOH A 97 397 76 HOH HOH . H 5 HOH A 98 398 112 HOH HOH . H 5 HOH A 99 399 164 HOH HOH . H 5 HOH A 100 400 87 HOH HOH . H 5 HOH A 101 401 133 HOH HOH . H 5 HOH A 102 402 131 HOH HOH . H 5 HOH A 103 403 68 HOH HOH . H 5 HOH A 104 404 168 HOH HOH . H 5 HOH A 105 405 75 HOH HOH . H 5 HOH A 106 406 143 HOH HOH . H 5 HOH A 107 407 141 HOH HOH . H 5 HOH A 108 408 94 HOH HOH . H 5 HOH A 109 409 110 HOH HOH . H 5 HOH A 110 410 161 HOH HOH . H 5 HOH A 111 411 132 HOH HOH . H 5 HOH A 112 412 167 HOH HOH . H 5 HOH A 113 413 150 HOH HOH . H 5 HOH A 114 414 146 HOH HOH . H 5 HOH A 115 415 148 HOH HOH . I 5 HOH B 1 101 128 HOH HOH . I 5 HOH B 2 102 95 HOH HOH . I 5 HOH B 3 103 121 HOH HOH . I 5 HOH B 4 104 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NQE . . . C 3 -28.07 32.449 -8.133 1 31.92 ? C1 NQE 201 A 1 HETATM 2 C C2 NQE . . . C 3 -29.71 30.566 -8.519 1 29.32 ? C2 NQE 201 A 1 HETATM 3 C C3 NQE . . . C 3 -27.478 30.858 -9.637 1 30.96 ? C3 NQE 201 A 1 HETATM 4 C C4 NQE . . . C 3 -27.395 29.757 -10.468 1 29.81 ? C4 NQE 201 A 1 HETATM 5 C C6 NQE . . . C 3 -25.189 30.502 -11.104 1 28.52 ? C6 NQE 201 A 1 HETATM 6 C C7 NQE . . . C 3 -25.298 31.619 -10.298 1 30.93 ? C7 NQE 201 A 1 HETATM 7 C C9 NQE . . . C 3 -26.046 28.811 -13.671 1 32.14 ? C9 NQE 201 A 1 HETATM 8 C C10 NQE . . . C 3 -26.034 29.993 -15.646 1 37.61 ? C10 NQE 201 A 1 HETATM 9 C C12 NQE . . . C 3 -25.83 27.646 -15.762 1 31.2 ? C12 NQE 201 A 1 HETATM 10 N N4 NQE . . . C 3 -25.901 25.212 -13.352 1 30.29 ? N4 NQE 201 A 1 HETATM 11 C C14 NQE . . . C 3 -25.904 26.263 -13.776 1 27.55 ? C14 NQE 201 A 1 HETATM 12 C C13 NQE . . . C 3 -25.915 27.569 -14.375 1 29.43 ? C13 NQE 201 A 1 HETATM 13 C C11 NQE . . . C 3 -25.883 28.867 -16.399 1 34.66 ? C11 NQE 201 A 1 HETATM 14 N N3 NQE . . . C 3 -26.123 29.982 -14.315 1 36.96 ? N3 NQE 201 A 1 HETATM 15 N N2 NQE . . . C 3 -25.963 28.849 -12.336 1 31.68 ? N2 NQE 201 A 1 HETATM 16 C C5 NQE . . . C 3 -26.235 29.585 -11.209 1 29.46 ? C5 NQE 201 A 1 HETATM 17 C C8 NQE . . . C 3 -26.451 31.788 -9.56 1 31.95 ? C8 NQE 201 A 1 HETATM 18 N N NQE . . . C 3 -26.827 32.76 -8.644 1 31.49 ? N NQE 201 A 1 HETATM 19 C C NQE . . . C 3 -26.036 33.937 -8.31 1 30.88 ? C NQE 201 A 1 HETATM 20 N N1 NQE . . . C 3 -28.459 31.273 -8.753 1 30.51 ? N1 NQE 201 A 1 HETATM 21 O O NQE . . . C 3 -28.7 33.085 -7.32 1 32.97 ? O NQE 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #