data_6TOH # _model_server_result.job_id 2E3yEGkSXIO1WDDVbgOHVw _model_server_result.datetime_utc '2024-11-14 03:46:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6toh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6TOH # _exptl.entry_id 6TOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 313.742 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-4-[(1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)amino]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOH _cell.length_a 67.785 _cell.length_b 67.785 _cell.length_c 165.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.8925 -58.703532 27.663833 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H12 Cl N5 O' _chem_comp.formula_weight 313.742 _chem_comp.id NQK _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-4-[(1,3-dimethyl-2-oxidanylidene-benzimidazol-5-yl)amino]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C5 NQK sing 246 n n N1 C5 NQK doub 247 n y N1 C4 NQK sing 248 n y C5 C1 NQK sing 249 n y C4 C3 NQK doub 250 n y C1 C NQK sing 251 n n C1 C2 NQK doub 252 n y C N NQK trip 253 n n C3 C2 NQK sing 254 n y C2 N2 NQK sing 255 n n N2 C6 NQK sing 256 n n C6 C7 NQK doub 257 n y C6 C12 NQK sing 258 n y C7 C8 NQK sing 259 n y C12 C11 NQK doub 260 n y C8 C9 NQK doub 261 n y C11 C9 NQK sing 262 n y C11 N4 NQK sing 263 n n C9 N3 NQK sing 264 n n N4 C13 NQK sing 265 n n N4 C10 NQK sing 266 n n N3 C10 NQK sing 267 n n N3 C14 NQK sing 268 n n C10 O NQK doub 269 n n C4 H1 NQK sing 270 n n C14 H2 NQK sing 271 n n C14 H3 NQK sing 272 n n C14 H4 NQK sing 273 n n C13 H5 NQK sing 274 n n C13 H6 NQK sing 275 n n C13 H7 NQK sing 276 n n C12 H8 NQK sing 277 n n N2 H9 NQK sing 278 n n C8 H10 NQK sing 279 n n C3 H11 NQK sing 280 n n C7 H12 NQK sing 281 n n # _atom_sites.entry_id 6TOH _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0.008517 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NQK A 1 201 200 NQK 386 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 4 EDO A 1 204 5 EDO EDO . G 4 EDO B 1 101 4 EDO EDO . H 5 HOH A 1 301 224 HOH HOH . H 5 HOH A 2 302 35 HOH HOH . H 5 HOH A 3 303 213 HOH HOH . H 5 HOH A 4 304 164 HOH HOH . H 5 HOH A 5 305 137 HOH HOH . H 5 HOH A 6 306 146 HOH HOH . H 5 HOH A 7 307 140 HOH HOH . H 5 HOH A 8 308 45 HOH HOH . H 5 HOH A 9 309 10 HOH HOH . H 5 HOH A 10 310 180 HOH HOH . H 5 HOH A 11 311 161 HOH HOH . H 5 HOH A 12 312 47 HOH HOH . H 5 HOH A 13 313 197 HOH HOH . H 5 HOH A 14 314 185 HOH HOH . H 5 HOH A 15 315 58 HOH HOH . H 5 HOH A 16 316 15 HOH HOH . H 5 HOH A 17 317 62 HOH HOH . H 5 HOH A 18 318 261 HOH HOH . H 5 HOH A 19 319 171 HOH HOH . H 5 HOH A 20 320 7 HOH HOH . H 5 HOH A 21 321 40 HOH HOH . H 5 HOH A 22 322 25 HOH HOH . H 5 HOH A 23 323 9 HOH HOH . H 5 HOH A 24 324 259 HOH HOH . H 5 HOH A 25 325 156 HOH HOH . H 5 HOH A 26 326 55 HOH HOH . H 5 HOH A 27 327 255 HOH HOH . H 5 HOH A 28 328 86 HOH HOH . H 5 HOH A 29 329 138 HOH HOH . H 5 HOH A 30 330 46 HOH HOH . H 5 HOH A 31 331 31 HOH HOH . H 5 HOH A 32 332 12 HOH HOH . H 5 HOH A 33 333 20 HOH HOH . H 5 HOH A 34 334 18 HOH HOH . H 5 HOH A 35 335 249 HOH HOH . H 5 HOH A 36 336 101 HOH HOH . H 5 HOH A 37 337 202 HOH HOH . H 5 HOH A 38 338 225 HOH HOH . H 5 HOH A 39 339 240 HOH HOH . H 5 HOH A 40 340 30 HOH HOH . H 5 HOH A 41 341 231 HOH HOH . H 5 HOH A 42 342 16 HOH HOH . H 5 HOH A 43 343 147 HOH HOH . H 5 HOH A 44 344 243 HOH HOH . H 5 HOH A 45 345 264 HOH HOH . H 5 HOH A 46 346 256 HOH HOH . H 5 HOH A 47 347 253 HOH HOH . H 5 HOH A 48 348 166 HOH HOH . H 5 HOH A 49 349 36 HOH HOH . H 5 HOH A 50 350 210 HOH HOH . H 5 HOH A 51 351 43 HOH HOH . H 5 HOH A 52 352 229 HOH HOH . H 5 HOH A 53 353 218 HOH HOH . H 5 HOH A 54 354 24 HOH HOH . H 5 HOH A 55 355 173 HOH HOH . H 5 HOH A 56 356 141 HOH HOH . H 5 HOH A 57 357 3 HOH HOH . H 5 HOH A 58 358 11 HOH HOH . H 5 HOH A 59 359 1 HOH HOH . H 5 HOH A 60 360 177 HOH HOH . H 5 HOH A 61 361 162 HOH HOH . H 5 HOH A 62 362 28 HOH HOH . H 5 HOH A 63 363 207 HOH HOH . H 5 HOH A 64 364 228 HOH HOH . H 5 HOH A 65 365 160 HOH HOH . H 5 HOH A 66 366 32 HOH HOH . H 5 HOH A 67 367 200 HOH HOH . H 5 HOH A 68 368 163 HOH HOH . H 5 HOH A 69 369 4 HOH HOH . H 5 HOH A 70 370 51 HOH HOH . H 5 HOH A 71 371 64 HOH HOH . H 5 HOH A 72 372 19 HOH HOH . H 5 HOH A 73 373 41 HOH HOH . H 5 HOH A 74 374 94 HOH HOH . H 5 HOH A 75 375 117 HOH HOH . H 5 HOH A 76 376 5 HOH HOH . H 5 HOH A 77 377 258 HOH HOH . H 5 HOH A 78 378 29 HOH HOH . H 5 HOH A 79 379 91 HOH HOH . H 5 HOH A 80 380 66 HOH HOH . H 5 HOH A 81 381 169 HOH HOH . H 5 HOH A 82 382 6 HOH HOH . H 5 HOH A 83 383 33 HOH HOH . H 5 HOH A 84 384 157 HOH HOH . H 5 HOH A 85 385 194 HOH HOH . H 5 HOH A 86 386 21 HOH HOH . H 5 HOH A 87 387 80 HOH HOH . H 5 HOH A 88 388 242 HOH HOH . H 5 HOH A 89 389 17 HOH HOH . H 5 HOH A 90 390 175 HOH HOH . H 5 HOH A 91 391 234 HOH HOH . H 5 HOH A 92 392 69 HOH HOH . H 5 HOH A 93 393 52 HOH HOH . H 5 HOH A 94 394 204 HOH HOH . H 5 HOH A 95 395 205 HOH HOH . H 5 HOH A 96 396 14 HOH HOH . H 5 HOH A 97 397 37 HOH HOH . H 5 HOH A 98 398 220 HOH HOH . H 5 HOH A 99 399 206 HOH HOH . H 5 HOH A 100 400 26 HOH HOH . H 5 HOH A 101 401 48 HOH HOH . H 5 HOH A 102 402 50 HOH HOH . H 5 HOH A 103 403 247 HOH HOH . H 5 HOH A 104 404 22 HOH HOH . H 5 HOH A 105 405 201 HOH HOH . H 5 HOH A 106 406 167 HOH HOH . H 5 HOH A 107 407 208 HOH HOH . H 5 HOH A 108 408 235 HOH HOH . H 5 HOH A 109 409 246 HOH HOH . H 5 HOH A 110 410 174 HOH HOH . H 5 HOH A 111 411 83 HOH HOH . H 5 HOH A 112 412 192 HOH HOH . H 5 HOH A 113 413 49 HOH HOH . H 5 HOH A 114 414 211 HOH HOH . H 5 HOH A 115 415 252 HOH HOH . H 5 HOH A 116 416 232 HOH HOH . H 5 HOH A 117 417 27 HOH HOH . H 5 HOH A 118 418 159 HOH HOH . H 5 HOH A 119 419 257 HOH HOH . H 5 HOH A 120 420 145 HOH HOH . H 5 HOH A 121 421 189 HOH HOH . H 5 HOH A 122 422 248 HOH HOH . H 5 HOH A 123 423 23 HOH HOH . H 5 HOH A 124 424 74 HOH HOH . H 5 HOH A 125 425 63 HOH HOH . H 5 HOH A 126 426 230 HOH HOH . H 5 HOH A 127 427 209 HOH HOH . H 5 HOH A 128 428 42 HOH HOH . H 5 HOH A 129 429 199 HOH HOH . H 5 HOH A 130 430 236 HOH HOH . H 5 HOH A 131 431 241 HOH HOH . H 5 HOH A 132 432 203 HOH HOH . H 5 HOH A 133 433 222 HOH HOH . H 5 HOH A 134 434 98 HOH HOH . H 5 HOH A 135 435 119 HOH HOH . H 5 HOH A 136 436 217 HOH HOH . H 5 HOH A 137 437 233 HOH HOH . H 5 HOH A 138 438 8 HOH HOH . H 5 HOH A 139 439 214 HOH HOH . H 5 HOH A 140 440 238 HOH HOH . H 5 HOH A 141 441 75 HOH HOH . H 5 HOH A 142 442 227 HOH HOH . H 5 HOH A 143 443 44 HOH HOH . H 5 HOH A 144 444 168 HOH HOH . H 5 HOH A 145 445 96 HOH HOH . H 5 HOH A 146 446 110 HOH HOH . H 5 HOH A 147 447 251 HOH HOH . H 5 HOH A 148 448 237 HOH HOH . H 5 HOH A 149 449 250 HOH HOH . H 5 HOH A 150 450 68 HOH HOH . H 5 HOH A 151 451 158 HOH HOH . H 5 HOH A 152 452 165 HOH HOH . H 5 HOH A 153 453 79 HOH HOH . H 5 HOH A 154 454 149 HOH HOH . H 5 HOH A 155 455 184 HOH HOH . H 5 HOH A 156 456 191 HOH HOH . H 5 HOH A 157 457 153 HOH HOH . H 5 HOH A 158 458 198 HOH HOH . H 5 HOH A 159 459 239 HOH HOH . H 5 HOH A 160 460 212 HOH HOH . H 5 HOH A 161 461 107 HOH HOH . H 5 HOH A 162 462 216 HOH HOH . H 5 HOH A 163 463 254 HOH HOH . H 5 HOH A 164 464 193 HOH HOH . I 5 HOH B 1 201 196 HOH HOH . I 5 HOH B 2 202 195 HOH HOH . I 5 HOH B 3 203 221 HOH HOH . I 5 HOH B 4 204 54 HOH HOH . I 5 HOH B 5 205 92 HOH HOH . I 5 HOH B 6 206 38 HOH HOH . I 5 HOH B 7 207 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NQK . . . C 3 25.817 -9.278 11.46 0.73 30.75 ? N1 NQK 201 A 1 HETATM 2 C C2 NQK . . . C 3 26.173 -9.909 14.155 0.73 28.96 ? C2 NQK 201 A 1 HETATM 3 N N3 NQK . . . C 3 22.503 -9.307 19.33 0.73 32.49 ? N3 NQK 201 A 1 HETATM 4 C C4 NQK . . . C 3 24.905 -8.956 12.38 0.73 31.56 ? C4 NQK 201 A 1 HETATM 5 N N4 NQK . . . C 3 23.136 -11.41 19.002 0.73 29.41 ? N4 NQK 201 A 1 HETATM 6 C C5 NQK . . . C 3 26.89 -9.909 11.884 0.73 30.24 ? C5 NQK 201 A 1 HETATM 7 C C6 NQK . . . C 3 25.435 -9.903 16.495 0.73 28.19 ? C6 NQK 201 A 1 HETATM 8 C C14 NQK . . . C 3 21.89 -8.112 19.902 0.73 33.87 ? C14 NQK 201 A 1 HETATM 9 C C13 NQK . . . C 3 23.236 -12.862 19.079 0.73 29.94 ? C13 NQK 201 A 1 HETATM 10 C C12 NQK . . . C 3 24.872 -10.939 17.233 0.73 26.95 ? C12 NQK 201 A 1 HETATM 11 C C10 NQK . . . C 3 22.264 -10.616 19.734 0.73 31.04 ? C10 NQK 201 A 1 HETATM 12 C C11 NQK . . . C 3 23.899 -10.615 18.159 0.73 27.84 ? C11 NQK 201 A 1 HETATM 13 N N2 NQK . . . C 3 26.358 -10.205 15.485 0.73 27.45 ? N2 NQK 201 A 1 HETATM 14 C C9 NQK . . . C 3 23.498 -9.3 18.363 0.73 31.13 ? C9 NQK 201 A 1 HETATM 15 C C8 NQK . . . C 3 24.065 -8.27 17.634 0.73 29.74 ? C8 NQK 201 A 1 HETATM 16 C C1 NQK . . . C 3 27.134 -10.27 13.206 0.73 26.28 ? C1 NQK 201 A 1 HETATM 17 C C3 NQK . . . C 3 25.032 -9.243 13.723 0.73 30.4 ? C3 NQK 201 A 1 HETATM 18 C C7 NQK . . . C 3 25.038 -8.582 16.701 0.73 29.75 ? C7 NQK 201 A 1 HETATM 19 O O NQK . . . C 3 21.446 -10.993 20.545 0.73 31.36 ? O NQK 201 A 1 HETATM 20 CL CL NQK . . . C 3 28.086 -10.275 10.692 0.28 32.56 ? CL NQK 201 A 1 HETATM 21 C C NQK . . . C 3 28.297 -11.004 13.607 0.73 25.07 ? C NQK 201 A 1 HETATM 22 N N NQK . . . C 3 29.237 -11.584 13.875 0.73 27.36 ? N NQK 201 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #