data_6TOH # _model_server_result.job_id Sw6tXFaBZSxQ2zsKrSZUmw _model_server_result.datetime_utc '2024-11-14 03:51:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6toh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 6TOH # _exptl.entry_id 6TOH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOH _cell.length_a 67.785 _cell.length_b 67.785 _cell.length_c 165.983 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOH _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.8925 -58.703532 27.663833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6TOH _atom_sites.fract_transf_matrix[1][1] 0.014753 _atom_sites.fract_transf_matrix[1][2] 0.008517 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017035 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NQK A 1 201 200 NQK 386 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 4 EDO A 1 204 5 EDO EDO . G 4 EDO B 1 101 4 EDO EDO . H 5 HOH A 1 301 224 HOH HOH . H 5 HOH A 2 302 35 HOH HOH . H 5 HOH A 3 303 213 HOH HOH . H 5 HOH A 4 304 164 HOH HOH . H 5 HOH A 5 305 137 HOH HOH . H 5 HOH A 6 306 146 HOH HOH . H 5 HOH A 7 307 140 HOH HOH . H 5 HOH A 8 308 45 HOH HOH . H 5 HOH A 9 309 10 HOH HOH . H 5 HOH A 10 310 180 HOH HOH . H 5 HOH A 11 311 161 HOH HOH . H 5 HOH A 12 312 47 HOH HOH . H 5 HOH A 13 313 197 HOH HOH . H 5 HOH A 14 314 185 HOH HOH . H 5 HOH A 15 315 58 HOH HOH . H 5 HOH A 16 316 15 HOH HOH . H 5 HOH A 17 317 62 HOH HOH . H 5 HOH A 18 318 261 HOH HOH . H 5 HOH A 19 319 171 HOH HOH . H 5 HOH A 20 320 7 HOH HOH . H 5 HOH A 21 321 40 HOH HOH . H 5 HOH A 22 322 25 HOH HOH . H 5 HOH A 23 323 9 HOH HOH . H 5 HOH A 24 324 259 HOH HOH . H 5 HOH A 25 325 156 HOH HOH . H 5 HOH A 26 326 55 HOH HOH . H 5 HOH A 27 327 255 HOH HOH . H 5 HOH A 28 328 86 HOH HOH . H 5 HOH A 29 329 138 HOH HOH . H 5 HOH A 30 330 46 HOH HOH . H 5 HOH A 31 331 31 HOH HOH . H 5 HOH A 32 332 12 HOH HOH . H 5 HOH A 33 333 20 HOH HOH . H 5 HOH A 34 334 18 HOH HOH . H 5 HOH A 35 335 249 HOH HOH . H 5 HOH A 36 336 101 HOH HOH . H 5 HOH A 37 337 202 HOH HOH . H 5 HOH A 38 338 225 HOH HOH . H 5 HOH A 39 339 240 HOH HOH . H 5 HOH A 40 340 30 HOH HOH . H 5 HOH A 41 341 231 HOH HOH . H 5 HOH A 42 342 16 HOH HOH . H 5 HOH A 43 343 147 HOH HOH . H 5 HOH A 44 344 243 HOH HOH . H 5 HOH A 45 345 264 HOH HOH . H 5 HOH A 46 346 256 HOH HOH . H 5 HOH A 47 347 253 HOH HOH . H 5 HOH A 48 348 166 HOH HOH . H 5 HOH A 49 349 36 HOH HOH . H 5 HOH A 50 350 210 HOH HOH . H 5 HOH A 51 351 43 HOH HOH . H 5 HOH A 52 352 229 HOH HOH . H 5 HOH A 53 353 218 HOH HOH . H 5 HOH A 54 354 24 HOH HOH . H 5 HOH A 55 355 173 HOH HOH . H 5 HOH A 56 356 141 HOH HOH . H 5 HOH A 57 357 3 HOH HOH . H 5 HOH A 58 358 11 HOH HOH . H 5 HOH A 59 359 1 HOH HOH . H 5 HOH A 60 360 177 HOH HOH . H 5 HOH A 61 361 162 HOH HOH . H 5 HOH A 62 362 28 HOH HOH . H 5 HOH A 63 363 207 HOH HOH . H 5 HOH A 64 364 228 HOH HOH . H 5 HOH A 65 365 160 HOH HOH . H 5 HOH A 66 366 32 HOH HOH . H 5 HOH A 67 367 200 HOH HOH . H 5 HOH A 68 368 163 HOH HOH . H 5 HOH A 69 369 4 HOH HOH . H 5 HOH A 70 370 51 HOH HOH . H 5 HOH A 71 371 64 HOH HOH . H 5 HOH A 72 372 19 HOH HOH . H 5 HOH A 73 373 41 HOH HOH . H 5 HOH A 74 374 94 HOH HOH . H 5 HOH A 75 375 117 HOH HOH . H 5 HOH A 76 376 5 HOH HOH . H 5 HOH A 77 377 258 HOH HOH . H 5 HOH A 78 378 29 HOH HOH . H 5 HOH A 79 379 91 HOH HOH . H 5 HOH A 80 380 66 HOH HOH . H 5 HOH A 81 381 169 HOH HOH . H 5 HOH A 82 382 6 HOH HOH . H 5 HOH A 83 383 33 HOH HOH . H 5 HOH A 84 384 157 HOH HOH . H 5 HOH A 85 385 194 HOH HOH . H 5 HOH A 86 386 21 HOH HOH . H 5 HOH A 87 387 80 HOH HOH . H 5 HOH A 88 388 242 HOH HOH . H 5 HOH A 89 389 17 HOH HOH . H 5 HOH A 90 390 175 HOH HOH . H 5 HOH A 91 391 234 HOH HOH . H 5 HOH A 92 392 69 HOH HOH . H 5 HOH A 93 393 52 HOH HOH . H 5 HOH A 94 394 204 HOH HOH . H 5 HOH A 95 395 205 HOH HOH . H 5 HOH A 96 396 14 HOH HOH . H 5 HOH A 97 397 37 HOH HOH . H 5 HOH A 98 398 220 HOH HOH . H 5 HOH A 99 399 206 HOH HOH . H 5 HOH A 100 400 26 HOH HOH . H 5 HOH A 101 401 48 HOH HOH . H 5 HOH A 102 402 50 HOH HOH . H 5 HOH A 103 403 247 HOH HOH . H 5 HOH A 104 404 22 HOH HOH . H 5 HOH A 105 405 201 HOH HOH . H 5 HOH A 106 406 167 HOH HOH . H 5 HOH A 107 407 208 HOH HOH . H 5 HOH A 108 408 235 HOH HOH . H 5 HOH A 109 409 246 HOH HOH . H 5 HOH A 110 410 174 HOH HOH . H 5 HOH A 111 411 83 HOH HOH . H 5 HOH A 112 412 192 HOH HOH . H 5 HOH A 113 413 49 HOH HOH . H 5 HOH A 114 414 211 HOH HOH . H 5 HOH A 115 415 252 HOH HOH . H 5 HOH A 116 416 232 HOH HOH . H 5 HOH A 117 417 27 HOH HOH . H 5 HOH A 118 418 159 HOH HOH . H 5 HOH A 119 419 257 HOH HOH . H 5 HOH A 120 420 145 HOH HOH . H 5 HOH A 121 421 189 HOH HOH . H 5 HOH A 122 422 248 HOH HOH . H 5 HOH A 123 423 23 HOH HOH . H 5 HOH A 124 424 74 HOH HOH . H 5 HOH A 125 425 63 HOH HOH . H 5 HOH A 126 426 230 HOH HOH . H 5 HOH A 127 427 209 HOH HOH . H 5 HOH A 128 428 42 HOH HOH . H 5 HOH A 129 429 199 HOH HOH . H 5 HOH A 130 430 236 HOH HOH . H 5 HOH A 131 431 241 HOH HOH . H 5 HOH A 132 432 203 HOH HOH . H 5 HOH A 133 433 222 HOH HOH . H 5 HOH A 134 434 98 HOH HOH . H 5 HOH A 135 435 119 HOH HOH . H 5 HOH A 136 436 217 HOH HOH . H 5 HOH A 137 437 233 HOH HOH . H 5 HOH A 138 438 8 HOH HOH . H 5 HOH A 139 439 214 HOH HOH . H 5 HOH A 140 440 238 HOH HOH . H 5 HOH A 141 441 75 HOH HOH . H 5 HOH A 142 442 227 HOH HOH . H 5 HOH A 143 443 44 HOH HOH . H 5 HOH A 144 444 168 HOH HOH . H 5 HOH A 145 445 96 HOH HOH . H 5 HOH A 146 446 110 HOH HOH . H 5 HOH A 147 447 251 HOH HOH . H 5 HOH A 148 448 237 HOH HOH . H 5 HOH A 149 449 250 HOH HOH . H 5 HOH A 150 450 68 HOH HOH . H 5 HOH A 151 451 158 HOH HOH . H 5 HOH A 152 452 165 HOH HOH . H 5 HOH A 153 453 79 HOH HOH . H 5 HOH A 154 454 149 HOH HOH . H 5 HOH A 155 455 184 HOH HOH . H 5 HOH A 156 456 191 HOH HOH . H 5 HOH A 157 457 153 HOH HOH . H 5 HOH A 158 458 198 HOH HOH . H 5 HOH A 159 459 239 HOH HOH . H 5 HOH A 160 460 212 HOH HOH . H 5 HOH A 161 461 107 HOH HOH . H 5 HOH A 162 462 216 HOH HOH . H 5 HOH A 163 463 254 HOH HOH . H 5 HOH A 164 464 193 HOH HOH . I 5 HOH B 1 201 196 HOH HOH . I 5 HOH B 2 202 195 HOH HOH . I 5 HOH B 3 203 221 HOH HOH . I 5 HOH B 4 204 54 HOH HOH . I 5 HOH B 5 205 92 HOH HOH . I 5 HOH B 6 206 38 HOH HOH . I 5 HOH B 7 207 182 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 4 39.196 -2.343 26.788 0.89 44.29 ? C1 EDO 203 A 1 HETATM 2 O O1 EDO . . . E 4 40.103 -3.351 27.21 0.89 42.01 ? O1 EDO 203 A 1 HETATM 3 C C2 EDO . . . E 4 39.516 -1.026 27.531 0.89 49.81 ? C2 EDO 203 A 1 HETATM 4 O O2 EDO . . . E 4 40.92 -0.779 27.455 0.89 53.92 ? O2 EDO 203 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #