data_6TOI
#
_model_server_result.job_id            003XUrPDLm0ti0s_2seIGw 
_model_server_result.datetime_utc      '2025-01-10 01:25:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6toi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    6TOI 
#
_exptl.entry_id    6TOI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              371.821 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-chloranyl-4-[[1-methyl-3-[(3~{R})-3-oxidanylbutyl]-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6TOI 
_cell.length_a            67.66 
_cell.length_b            67.66 
_cell.length_c            166.64 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TOI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.83 -58.595279 27.773333 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H18 Cl N5 O2' 
_chem_comp.formula_weight    371.821 
_chem_comp.id                NQN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-chloranyl-4-[[1-methyl-3-[(3~{R})-3-oxidanylbutyl]-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C1 NQN sing 255 n n 
N C1 NQN doub 256 n y 
N C NQN sing 257 n y 
C1 C2 NQN sing 258 n y 
C C4 NQN doub 259 n y 
C2 C17 NQN sing 260 n n 
C2 C3 NQN doub 261 n y 
C17 N4 NQN trip 262 n n 
C4 C3 NQN sing 263 n y 
C3 N1 NQN sing 264 n n 
N1 C5 NQN sing 265 n n 
C5 C6 NQN doub 266 n y 
C5 C10 NQN sing 267 n y 
C6 C7 NQN sing 268 n y 
C10 C9 NQN doub 269 n y 
C7 C8 NQN doub 270 n y 
C16 C15 NQN sing 271 n n 
C14 C15 NQN sing 272 n n 
C14 C13 NQN sing 273 n n 
C15 O1 NQN sing 274 n n 
C9 C8 NQN sing 275 n y 
C9 N2 NQN sing 276 n n 
C8 N3 NQN sing 277 n n 
C13 N2 NQN sing 278 n n 
N2 C11 NQN sing 279 n n 
N3 C11 NQN sing 280 n n 
N3 C12 NQN sing 281 n n 
C11 O NQN doub 282 n n 
C4 H1 NQN sing 283 n n 
C10 H2 NQN sing 284 n n 
C6 H3 NQN sing 285 n n 
C7 H4 NQN sing 286 n n 
N1 H5 NQN sing 287 n n 
C H6 NQN sing 288 n n 
C13 H7 NQN sing 289 n n 
C13 H8 NQN sing 290 n n 
C14 H9 NQN sing 291 n n 
C14 H10 NQN sing 292 n n 
C15 H11 NQN sing 293 n n 
O1 H12 NQN sing 294 n n 
C16 H13 NQN sing 295 n n 
C16 H14 NQN sing 296 n n 
C16 H15 NQN sing 297 n n 
C12 H16 NQN sing 298 n n 
C12 H17 NQN sing 299 n n 
C12 H18 NQN sing 300 n n 
#
_atom_sites.entry_id                     6TOI 
_atom_sites.fract_transf_matrix[1][1]    0.01478 
_atom_sites.fract_transf_matrix[1][2]    0.008533 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006001 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NQN A 1 201 200 NQN 357 . 
D 4 EDO A 1 202 1 EDO EDO . 
E 4 EDO A 1 203 3 EDO EDO . 
F 4 EDO A 1 204 4 EDO EDO . 
G 4 EDO A 1 205 5 EDO EDO . 
H 5 DMS A 1 206 1 DMS DMS . 
I 5 DMS A 1 207 2 DMS DMS . 
J 4 EDO B 1 101 2 EDO EDO . 
K 6 HOH A 1 301 156 HOH HOH . 
K 6 HOH A 2 302 79 HOH HOH . 
K 6 HOH A 3 303 13 HOH HOH . 
K 6 HOH A 4 304 22 HOH HOH . 
K 6 HOH A 5 305 142 HOH HOH . 
K 6 HOH A 6 306 146 HOH HOH . 
K 6 HOH A 7 307 6 HOH HOH . 
K 6 HOH A 8 308 122 HOH HOH . 
K 6 HOH A 9 309 144 HOH HOH . 
K 6 HOH A 10 310 160 HOH HOH . 
K 6 HOH A 11 311 40 HOH HOH . 
K 6 HOH A 12 312 151 HOH HOH . 
K 6 HOH A 13 313 30 HOH HOH . 
K 6 HOH A 14 314 165 HOH HOH . 
K 6 HOH A 15 315 27 HOH HOH . 
K 6 HOH A 16 316 58 HOH HOH . 
K 6 HOH A 17 317 166 HOH HOH . 
K 6 HOH A 18 318 89 HOH HOH . 
K 6 HOH A 19 319 96 HOH HOH . 
K 6 HOH A 20 320 143 HOH HOH . 
K 6 HOH A 21 321 102 HOH HOH . 
K 6 HOH A 22 322 83 HOH HOH . 
K 6 HOH A 23 323 138 HOH HOH . 
K 6 HOH A 24 324 21 HOH HOH . 
K 6 HOH A 25 325 25 HOH HOH . 
K 6 HOH A 26 326 152 HOH HOH . 
K 6 HOH A 27 327 95 HOH HOH . 
K 6 HOH A 28 328 55 HOH HOH . 
K 6 HOH A 29 329 50 HOH HOH . 
K 6 HOH A 30 330 15 HOH HOH . 
K 6 HOH A 31 331 33 HOH HOH . 
K 6 HOH A 32 332 16 HOH HOH . 
K 6 HOH A 33 333 168 HOH HOH . 
K 6 HOH A 34 334 191 HOH HOH . 
K 6 HOH A 35 335 12 HOH HOH . 
K 6 HOH A 36 336 148 HOH HOH . 
K 6 HOH A 37 337 119 HOH HOH . 
K 6 HOH A 38 338 1 HOH HOH . 
K 6 HOH A 39 339 149 HOH HOH . 
K 6 HOH A 40 340 23 HOH HOH . 
K 6 HOH A 41 341 92 HOH HOH . 
K 6 HOH A 42 342 3 HOH HOH . 
K 6 HOH A 43 343 24 HOH HOH . 
K 6 HOH A 44 344 5 HOH HOH . 
K 6 HOH A 45 345 2 HOH HOH . 
K 6 HOH A 46 346 67 HOH HOH . 
K 6 HOH A 47 347 38 HOH HOH . 
K 6 HOH A 48 348 94 HOH HOH . 
K 6 HOH A 49 349 93 HOH HOH . 
K 6 HOH A 50 350 14 HOH HOH . 
K 6 HOH A 51 351 129 HOH HOH . 
K 6 HOH A 52 352 73 HOH HOH . 
K 6 HOH A 53 353 141 HOH HOH . 
K 6 HOH A 54 354 52 HOH HOH . 
K 6 HOH A 55 355 4 HOH HOH . 
K 6 HOH A 56 356 91 HOH HOH . 
K 6 HOH A 57 357 37 HOH HOH . 
K 6 HOH A 58 358 64 HOH HOH . 
K 6 HOH A 59 359 188 HOH HOH . 
K 6 HOH A 60 360 20 HOH HOH . 
K 6 HOH A 61 361 9 HOH HOH . 
K 6 HOH A 62 362 11 HOH HOH . 
K 6 HOH A 63 363 70 HOH HOH . 
K 6 HOH A 64 364 90 HOH HOH . 
K 6 HOH A 65 365 56 HOH HOH . 
K 6 HOH A 66 366 42 HOH HOH . 
K 6 HOH A 67 367 192 HOH HOH . 
K 6 HOH A 68 368 153 HOH HOH . 
K 6 HOH A 69 369 147 HOH HOH . 
K 6 HOH A 70 370 34 HOH HOH . 
K 6 HOH A 71 371 28 HOH HOH . 
K 6 HOH A 72 372 161 HOH HOH . 
K 6 HOH A 73 373 74 HOH HOH . 
K 6 HOH A 74 374 162 HOH HOH . 
K 6 HOH A 75 375 35 HOH HOH . 
K 6 HOH A 76 376 195 HOH HOH . 
K 6 HOH A 77 377 7 HOH HOH . 
K 6 HOH A 78 378 65 HOH HOH . 
K 6 HOH A 79 379 145 HOH HOH . 
K 6 HOH A 80 380 97 HOH HOH . 
K 6 HOH A 81 381 61 HOH HOH . 
K 6 HOH A 82 382 32 HOH HOH . 
K 6 HOH A 83 383 36 HOH HOH . 
K 6 HOH A 84 384 19 HOH HOH . 
K 6 HOH A 85 385 48 HOH HOH . 
K 6 HOH A 86 386 154 HOH HOH . 
K 6 HOH A 87 387 72 HOH HOH . 
K 6 HOH A 88 388 134 HOH HOH . 
K 6 HOH A 89 389 41 HOH HOH . 
K 6 HOH A 90 390 197 HOH HOH . 
K 6 HOH A 91 391 8 HOH HOH . 
K 6 HOH A 92 392 17 HOH HOH . 
K 6 HOH A 93 393 169 HOH HOH . 
K 6 HOH A 94 394 51 HOH HOH . 
K 6 HOH A 95 395 45 HOH HOH . 
K 6 HOH A 96 396 77 HOH HOH . 
K 6 HOH A 97 397 71 HOH HOH . 
K 6 HOH A 98 398 201 HOH HOH . 
K 6 HOH A 99 399 200 HOH HOH . 
K 6 HOH A 100 400 18 HOH HOH . 
K 6 HOH A 101 401 63 HOH HOH . 
K 6 HOH A 102 402 26 HOH HOH . 
K 6 HOH A 103 403 86 HOH HOH . 
K 6 HOH A 104 404 46 HOH HOH . 
K 6 HOH A 105 405 106 HOH HOH . 
K 6 HOH A 106 406 31 HOH HOH . 
K 6 HOH A 107 407 180 HOH HOH . 
K 6 HOH A 108 408 49 HOH HOH . 
K 6 HOH A 109 409 183 HOH HOH . 
K 6 HOH A 110 410 10 HOH HOH . 
K 6 HOH A 111 411 100 HOH HOH . 
K 6 HOH A 112 412 190 HOH HOH . 
K 6 HOH A 113 413 47 HOH HOH . 
K 6 HOH A 114 414 163 HOH HOH . 
K 6 HOH A 115 415 126 HOH HOH . 
K 6 HOH A 116 416 39 HOH HOH . 
K 6 HOH A 117 417 120 HOH HOH . 
K 6 HOH A 118 418 60 HOH HOH . 
K 6 HOH A 119 419 85 HOH HOH . 
K 6 HOH A 120 420 178 HOH HOH . 
K 6 HOH A 121 421 182 HOH HOH . 
K 6 HOH A 122 422 198 HOH HOH . 
K 6 HOH A 123 423 98 HOH HOH . 
K 6 HOH A 124 424 196 HOH HOH . 
K 6 HOH A 125 425 171 HOH HOH . 
K 6 HOH A 126 426 181 HOH HOH . 
K 6 HOH A 127 427 170 HOH HOH . 
K 6 HOH A 128 428 99 HOH HOH . 
K 6 HOH A 129 429 111 HOH HOH . 
K 6 HOH A 130 430 174 HOH HOH . 
K 6 HOH A 131 431 59 HOH HOH . 
K 6 HOH A 132 432 193 HOH HOH . 
K 6 HOH A 133 433 157 HOH HOH . 
K 6 HOH A 134 434 76 HOH HOH . 
K 6 HOH A 135 435 179 HOH HOH . 
K 6 HOH A 136 436 82 HOH HOH . 
K 6 HOH A 137 437 68 HOH HOH . 
K 6 HOH A 138 438 66 HOH HOH . 
K 6 HOH A 139 439 155 HOH HOH . 
K 6 HOH A 140 440 184 HOH HOH . 
K 6 HOH A 141 441 189 HOH HOH . 
K 6 HOH A 142 442 199 HOH HOH . 
K 6 HOH A 143 443 185 HOH HOH . 
K 6 HOH A 144 444 187 HOH HOH . 
K 6 HOH A 145 445 186 HOH HOH . 
K 6 HOH A 146 446 176 HOH HOH . 
K 6 HOH A 147 447 172 HOH HOH . 
K 6 HOH A 148 448 177 HOH HOH . 
L 6 HOH B 1 201 103 HOH HOH . 
L 6 HOH B 2 202 44 HOH HOH . 
L 6 HOH B 3 203 175 HOH HOH . 
L 6 HOH B 4 204 54 HOH HOH . 
L 6 HOH B 5 205 80 HOH HOH . 
L 6 HOH B 6 206 69 HOH HOH . 
L 6 HOH B 7 207 173 HOH HOH . 
L 6 HOH B 8 208 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 NQN . . . C 3 27.234 -10.257 13.181 1 18.7 ? C2 NQN 201 A 1 
HETATM 2 C C3 NQN . . . C 3 26.276 -9.899 14.133 1 19.52 ? C3 NQN 201 A 1 
HETATM 3 C C4 NQN . . . C 3 25.153 -9.208 13.71 1 21.66 ? C4 NQN 201 A 1 
HETATM 4 C C5 NQN . . . C 3 25.455 -9.926 16.428 1 18.41 ? C5 NQN 201 A 1 
HETATM 5 C C10 NQN . . . C 3 24.934 -10.975 17.172 1 16.69 ? C10 NQN 201 A 1 
HETATM 6 C C11 NQN . . . C 3 22.39 -10.737 19.725 1 21.54 ? C11 NQN 201 A 1 
HETATM 7 C C6 NQN . . . C 3 25.014 -8.62 16.634 1 19.87 ? C6 NQN 201 A 1 
HETATM 8 C C7 NQN . . . C 3 24.044 -8.339 17.579 1 19.37 ? C7 NQN 201 A 1 
HETATM 9 N N1 NQN . . . C 3 26.426 -10.209 15.458 1 18.01 ? N1 NQN 201 A 1 
HETATM 10 CL CL NQN . . . C 3 28.157 -10.295 10.658 0.21 22.24 ? CL NQN 201 A 1 
HETATM 11 C C1 NQN . . . C 3 26.99 -9.886 11.863 1 23.42 ? C1 NQN 201 A 1 
HETATM 12 N N NQN . . . C 3 25.933 -9.233 11.449 1 24.15 ? N NQN 201 A 1 
HETATM 13 C C17 NQN . . . C 3 28.408 -10.981 13.559 1 16.53 ? C17 NQN 201 A 1 
HETATM 14 N N4 NQN . . . C 3 29.323 -11.555 13.896 1 16.21 ? N4 NQN 201 A 1 
HETATM 15 C C NQN . . . C 3 25.031 -8.904 12.372 1 22.43 ? C NQN 201 A 1 
HETATM 16 C C9 NQN . . . C 3 23.967 -10.683 18.11 1 17.33 ? C9 NQN 201 A 1 
HETATM 17 N N2 NQN . . . C 3 23.266 -11.496 18.98 1 18.11 ? N2 NQN 201 A 1 
HETATM 18 C C13 NQN . . . C 3 23.273 -12.952 18.971 1 16.74 ? C13 NQN 201 A 1 
HETATM 19 C C14 NQN . . . C 3 22.303 -13.522 17.949 1 18.55 ? C14 NQN 201 A 1 
HETATM 20 C C15 NQN . . . C 3 22.202 -15.03 18.011 1 21.86 ? C15 NQN 201 A 1 
HETATM 21 O O1 NQN . . . C 3 21.805 -15.432 19.322 1 25.18 ? O1 NQN 201 A 1 
HETATM 22 C C16 NQN . . . C 3 23.48 -15.734 17.618 1 20.52 ? C16 NQN 201 A 1 
HETATM 23 O O NQN . . . C 3 21.629 -11.136 20.568 1 21.82 ? O NQN 201 A 1 
HETATM 24 N N3 NQN . . . C 3 22.554 -9.432 19.311 1 21.32 ? N3 NQN 201 A 1 
HETATM 25 C C12 NQN . . . C 3 21.82 -8.291 19.842 1 19.61 ? C12 NQN 201 A 1 
HETATM 26 C C8 NQN . . . C 3 23.522 -9.385 18.316 1 20.34 ? C8 NQN 201 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           26 
#