data_6TOJ # _model_server_result.job_id LeVSnV81IQPei8Tp-W0-lg _model_server_result.datetime_utc '2025-01-25 08:02:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6toj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6TOJ # _exptl.entry_id 6TOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.847 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-4-[[1-methyl-3-(3-methyl-3-oxidanyl-butyl)-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOJ _cell.length_a 66.999 _cell.length_b 66.999 _cell.length_c 166.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_577 x,x-y+2,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -66.999 116.045672 361.248333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H20 Cl N5 O2' _chem_comp.formula_weight 385.847 _chem_comp.id NQQ _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-4-[[1-methyl-3-(3-methyl-3-oxidanyl-butyl)-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C15 NQQ sing 246 n n N3 C15 NQQ doub 247 n y N3 C14 NQQ sing 248 n y C15 C16 NQQ sing 249 n y C14 C13 NQQ doub 250 n y C16 C17 NQQ sing 251 n n C16 C12 NQQ doub 252 n y C17 N4 NQQ trip 253 n n C13 C12 NQQ sing 254 n y C12 N2 NQQ sing 255 n n N2 C11 NQQ sing 256 n n C11 C10 NQQ doub 257 n y C11 C18 NQQ sing 258 n y C10 C9 NQQ sing 259 n y C18 C7 NQQ doub 260 n y C6 C4 NQQ sing 261 n n C5 C4 NQQ sing 262 n n C9 C8 NQQ doub 263 n y C3 C4 NQQ sing 264 n n C3 C2 NQQ sing 265 n n C4 O1 NQQ sing 266 n n C7 C8 NQQ sing 267 n y C7 N1 NQQ sing 268 n n C8 N NQQ sing 269 n n N1 C2 NQQ sing 270 n n N1 C1 NQQ sing 271 n n N C1 NQQ sing 272 n n N C NQQ sing 273 n n C1 O NQQ doub 274 n n C6 H1 NQQ sing 275 n n C6 H2 NQQ sing 276 n n C6 H3 NQQ sing 277 n n C5 H4 NQQ sing 278 n n C5 H5 NQQ sing 279 n n C5 H6 NQQ sing 280 n n C2 H7 NQQ sing 281 n n C2 H8 NQQ sing 282 n n C14 H9 NQQ sing 283 n n C13 H10 NQQ sing 284 n n N2 H11 NQQ sing 285 n n C10 H12 NQQ sing 286 n n C9 H13 NQQ sing 287 n n C H14 NQQ sing 288 n n C H15 NQQ sing 289 n n C H16 NQQ sing 290 n n C18 H17 NQQ sing 291 n n C3 H18 NQQ sing 292 n n C3 H19 NQQ sing 293 n n O1 H20 NQQ sing 294 n n # _atom_sites.entry_id 6TOJ _atom_sites.fract_transf_matrix[1][1] 0.014926 _atom_sites.fract_transf_matrix[1][2] 0.008617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NQQ A 1 201 200 NQQ 039 . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 4 HOH A 1 301 117 HOH HOH . G 4 HOH A 2 302 23 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 116 HOH HOH . G 4 HOH A 5 305 96 HOH HOH . G 4 HOH A 6 306 118 HOH HOH . G 4 HOH A 7 307 64 HOH HOH . G 4 HOH A 8 308 7 HOH HOH . G 4 HOH A 9 309 124 HOH HOH . G 4 HOH A 10 310 33 HOH HOH . G 4 HOH A 11 311 125 HOH HOH . G 4 HOH A 12 312 39 HOH HOH . G 4 HOH A 13 313 57 HOH HOH . G 4 HOH A 14 314 10 HOH HOH . G 4 HOH A 15 315 22 HOH HOH . G 4 HOH A 16 316 19 HOH HOH . G 4 HOH A 17 317 84 HOH HOH . G 4 HOH A 18 318 86 HOH HOH . G 4 HOH A 19 319 128 HOH HOH . G 4 HOH A 20 320 99 HOH HOH . G 4 HOH A 21 321 63 HOH HOH . G 4 HOH A 22 322 65 HOH HOH . G 4 HOH A 23 323 31 HOH HOH . G 4 HOH A 24 324 61 HOH HOH . G 4 HOH A 25 325 55 HOH HOH . G 4 HOH A 26 326 71 HOH HOH . G 4 HOH A 27 327 38 HOH HOH . G 4 HOH A 28 328 20 HOH HOH . G 4 HOH A 29 329 37 HOH HOH . G 4 HOH A 30 330 114 HOH HOH . G 4 HOH A 31 331 9 HOH HOH . G 4 HOH A 32 332 69 HOH HOH . G 4 HOH A 33 333 2 HOH HOH . G 4 HOH A 34 334 100 HOH HOH . G 4 HOH A 35 335 122 HOH HOH . G 4 HOH A 36 336 24 HOH HOH . G 4 HOH A 37 337 60 HOH HOH . G 4 HOH A 38 338 52 HOH HOH . G 4 HOH A 39 339 11 HOH HOH . G 4 HOH A 40 340 66 HOH HOH . G 4 HOH A 41 341 29 HOH HOH . G 4 HOH A 42 342 30 HOH HOH . G 4 HOH A 43 343 16 HOH HOH . G 4 HOH A 44 344 120 HOH HOH . G 4 HOH A 45 345 5 HOH HOH . G 4 HOH A 46 346 113 HOH HOH . G 4 HOH A 47 347 13 HOH HOH . G 4 HOH A 48 348 103 HOH HOH . G 4 HOH A 49 349 34 HOH HOH . G 4 HOH A 50 350 15 HOH HOH . G 4 HOH A 51 351 93 HOH HOH . G 4 HOH A 52 352 70 HOH HOH . G 4 HOH A 53 353 126 HOH HOH . G 4 HOH A 54 354 47 HOH HOH . G 4 HOH A 55 355 123 HOH HOH . G 4 HOH A 56 356 21 HOH HOH . G 4 HOH A 57 357 59 HOH HOH . G 4 HOH A 58 358 94 HOH HOH . G 4 HOH A 59 359 4 HOH HOH . G 4 HOH A 60 360 26 HOH HOH . G 4 HOH A 61 361 72 HOH HOH . G 4 HOH A 62 362 58 HOH HOH . G 4 HOH A 63 363 115 HOH HOH . G 4 HOH A 64 364 17 HOH HOH . G 4 HOH A 65 365 50 HOH HOH . G 4 HOH A 66 366 74 HOH HOH . G 4 HOH A 67 367 41 HOH HOH . G 4 HOH A 68 368 27 HOH HOH . G 4 HOH A 69 369 79 HOH HOH . G 4 HOH A 70 370 92 HOH HOH . G 4 HOH A 71 371 82 HOH HOH . G 4 HOH A 72 372 14 HOH HOH . G 4 HOH A 73 373 112 HOH HOH . G 4 HOH A 74 374 87 HOH HOH . G 4 HOH A 75 375 32 HOH HOH . G 4 HOH A 76 376 18 HOH HOH . G 4 HOH A 77 377 85 HOH HOH . G 4 HOH A 78 378 131 HOH HOH . G 4 HOH A 79 379 28 HOH HOH . G 4 HOH A 80 380 25 HOH HOH . G 4 HOH A 81 381 46 HOH HOH . G 4 HOH A 82 382 6 HOH HOH . G 4 HOH A 83 383 40 HOH HOH . G 4 HOH A 84 384 49 HOH HOH . G 4 HOH A 85 385 48 HOH HOH . G 4 HOH A 86 386 54 HOH HOH . G 4 HOH A 87 387 77 HOH HOH . G 4 HOH A 88 388 78 HOH HOH . G 4 HOH A 89 389 83 HOH HOH . G 4 HOH A 90 390 73 HOH HOH . G 4 HOH A 91 391 97 HOH HOH . G 4 HOH A 92 392 80 HOH HOH . G 4 HOH A 93 393 127 HOH HOH . G 4 HOH A 94 394 44 HOH HOH . G 4 HOH A 95 395 130 HOH HOH . G 4 HOH A 96 396 67 HOH HOH . G 4 HOH A 97 397 101 HOH HOH . G 4 HOH A 98 398 88 HOH HOH . G 4 HOH A 99 399 95 HOH HOH . G 4 HOH A 100 400 105 HOH HOH . G 4 HOH A 101 401 36 HOH HOH . G 4 HOH A 102 402 75 HOH HOH . G 4 HOH A 103 403 129 HOH HOH . G 4 HOH A 104 404 90 HOH HOH . G 4 HOH A 105 405 68 HOH HOH . G 4 HOH A 106 406 121 HOH HOH . G 4 HOH A 107 407 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL NQQ . . . B 2 4.928 67.422 177.221 1 51.55 ? CL NQQ 201 A 1 HETATM 2 C C6 NQQ . . . B 2 12.422 72.685 183.688 1 31.11 ? C6 NQQ 201 A 1 HETATM 3 C C5 NQQ . . . B 2 9.986 72.983 184.16 1 29.5 ? C5 NQQ 201 A 1 HETATM 4 C C8 NQQ . . . B 2 9.634 66.609 184.903 1 35.5 ? C8 NQQ 201 A 1 HETATM 5 C C4 NQQ . . . B 2 11.252 72.241 184.548 1 30.47 ? C4 NQQ 201 A 1 HETATM 6 N N3 NQQ . . . B 2 7.277 66.566 177.919 1 41.54 ? N3 NQQ 201 A 1 HETATM 7 C C2 NQQ . . . B 2 10.11 70.18 185.513 1 30.39 ? C2 NQQ 201 A 1 HETATM 8 N N1 NQQ . . . B 2 10.068 68.719 185.489 1 35.32 ? N1 NQQ 201 A 1 HETATM 9 N N4 NQQ . . . B 2 3.933 68.876 180.485 1 27.26 ? N4 NQQ 201 A 1 HETATM 10 C C17 NQQ . . . B 2 4.835 68.286 180.108 1 30.36 ? C17 NQQ 201 A 1 HETATM 11 C C16 NQQ . . . B 2 5.993 67.551 179.689 1 32.47 ? C16 NQQ 201 A 1 HETATM 12 C C15 NQQ . . . B 2 6.195 67.17 178.37 1 40.78 ? C15 NQQ 201 A 1 HETATM 13 C C14 NQQ . . . B 2 8.231 66.288 178.815 1 41.47 ? C14 NQQ 201 A 1 HETATM 14 C C13 NQQ . . . B 2 8.142 66.588 180.159 1 38.09 ? C13 NQQ 201 A 1 HETATM 15 C C12 NQQ . . . B 2 6.998 67.23 180.626 1 33.26 ? C12 NQQ 201 A 1 HETATM 16 N N2 NQQ . . . B 2 6.828 67.506 181.965 1 30.96 ? N2 NQQ 201 A 1 HETATM 17 C C11 NQQ . . . B 2 7.752 67.21 182.975 1 33.91 ? C11 NQQ 201 A 1 HETATM 18 C C10 NQQ . . . B 2 8.094 65.884 183.239 1 34.53 ? C10 NQQ 201 A 1 HETATM 19 C C9 NQQ . . . B 2 9.037 65.572 184.204 1 35.66 ? C9 NQQ 201 A 1 HETATM 20 N N NQQ . . . B 2 10.602 66.622 185.901 1 35.12 ? N NQQ 201 A 1 HETATM 21 C C NQQ . . . B 2 11.261 65.456 186.476 1 37.22 ? C NQQ 201 A 1 HETATM 22 C C18 NQQ . . . B 2 8.349 68.248 183.684 1 32.42 ? C18 NQQ 201 A 1 HETATM 23 C C7 NQQ . . . B 2 9.293 67.928 184.645 1 34.99 ? C7 NQQ 201 A 1 HETATM 24 C C1 NQQ . . . B 2 10.874 67.919 186.273 1 36.24 ? C1 NQQ 201 A 1 HETATM 25 O O NQQ . . . B 2 11.662 68.286 187.122 1 35.94 ? O NQQ 201 A 1 HETATM 26 C C3 NQQ . . . B 2 11.056 70.735 184.457 1 33.59 ? C3 NQQ 201 A 1 HETATM 27 O O1 NQQ . . . B 2 11.545 72.561 185.918 1 30.21 ? O1 NQQ 201 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #