data_6TOJ # _model_server_result.job_id IyI3tV_UoINPDug_NbuhMA _model_server_result.datetime_utc '2025-01-10 08:13:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6toj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 6TOJ # _exptl.entry_id 6TOJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOJ _cell.length_a 66.999 _cell.length_b 66.999 _cell.length_c 166.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_577 x,x-y+2,-z+13/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -66.999 116.045672 361.248333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6TOJ _atom_sites.fract_transf_matrix[1][1] 0.014926 _atom_sites.fract_transf_matrix[1][2] 0.008617 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017235 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005998 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NQQ A 1 201 200 NQQ 039 . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 3 EDO A 1 204 3 EDO EDO . F 3 EDO A 1 205 4 EDO EDO . G 4 HOH A 1 301 117 HOH HOH . G 4 HOH A 2 302 23 HOH HOH . G 4 HOH A 3 303 3 HOH HOH . G 4 HOH A 4 304 116 HOH HOH . G 4 HOH A 5 305 96 HOH HOH . G 4 HOH A 6 306 118 HOH HOH . G 4 HOH A 7 307 64 HOH HOH . G 4 HOH A 8 308 7 HOH HOH . G 4 HOH A 9 309 124 HOH HOH . G 4 HOH A 10 310 33 HOH HOH . G 4 HOH A 11 311 125 HOH HOH . G 4 HOH A 12 312 39 HOH HOH . G 4 HOH A 13 313 57 HOH HOH . G 4 HOH A 14 314 10 HOH HOH . G 4 HOH A 15 315 22 HOH HOH . G 4 HOH A 16 316 19 HOH HOH . G 4 HOH A 17 317 84 HOH HOH . G 4 HOH A 18 318 86 HOH HOH . G 4 HOH A 19 319 128 HOH HOH . G 4 HOH A 20 320 99 HOH HOH . G 4 HOH A 21 321 63 HOH HOH . G 4 HOH A 22 322 65 HOH HOH . G 4 HOH A 23 323 31 HOH HOH . G 4 HOH A 24 324 61 HOH HOH . G 4 HOH A 25 325 55 HOH HOH . G 4 HOH A 26 326 71 HOH HOH . G 4 HOH A 27 327 38 HOH HOH . G 4 HOH A 28 328 20 HOH HOH . G 4 HOH A 29 329 37 HOH HOH . G 4 HOH A 30 330 114 HOH HOH . G 4 HOH A 31 331 9 HOH HOH . G 4 HOH A 32 332 69 HOH HOH . G 4 HOH A 33 333 2 HOH HOH . G 4 HOH A 34 334 100 HOH HOH . G 4 HOH A 35 335 122 HOH HOH . G 4 HOH A 36 336 24 HOH HOH . G 4 HOH A 37 337 60 HOH HOH . G 4 HOH A 38 338 52 HOH HOH . G 4 HOH A 39 339 11 HOH HOH . G 4 HOH A 40 340 66 HOH HOH . G 4 HOH A 41 341 29 HOH HOH . G 4 HOH A 42 342 30 HOH HOH . G 4 HOH A 43 343 16 HOH HOH . G 4 HOH A 44 344 120 HOH HOH . G 4 HOH A 45 345 5 HOH HOH . G 4 HOH A 46 346 113 HOH HOH . G 4 HOH A 47 347 13 HOH HOH . G 4 HOH A 48 348 103 HOH HOH . G 4 HOH A 49 349 34 HOH HOH . G 4 HOH A 50 350 15 HOH HOH . G 4 HOH A 51 351 93 HOH HOH . G 4 HOH A 52 352 70 HOH HOH . G 4 HOH A 53 353 126 HOH HOH . G 4 HOH A 54 354 47 HOH HOH . G 4 HOH A 55 355 123 HOH HOH . G 4 HOH A 56 356 21 HOH HOH . G 4 HOH A 57 357 59 HOH HOH . G 4 HOH A 58 358 94 HOH HOH . G 4 HOH A 59 359 4 HOH HOH . G 4 HOH A 60 360 26 HOH HOH . G 4 HOH A 61 361 72 HOH HOH . G 4 HOH A 62 362 58 HOH HOH . G 4 HOH A 63 363 115 HOH HOH . G 4 HOH A 64 364 17 HOH HOH . G 4 HOH A 65 365 50 HOH HOH . G 4 HOH A 66 366 74 HOH HOH . G 4 HOH A 67 367 41 HOH HOH . G 4 HOH A 68 368 27 HOH HOH . G 4 HOH A 69 369 79 HOH HOH . G 4 HOH A 70 370 92 HOH HOH . G 4 HOH A 71 371 82 HOH HOH . G 4 HOH A 72 372 14 HOH HOH . G 4 HOH A 73 373 112 HOH HOH . G 4 HOH A 74 374 87 HOH HOH . G 4 HOH A 75 375 32 HOH HOH . G 4 HOH A 76 376 18 HOH HOH . G 4 HOH A 77 377 85 HOH HOH . G 4 HOH A 78 378 131 HOH HOH . G 4 HOH A 79 379 28 HOH HOH . G 4 HOH A 80 380 25 HOH HOH . G 4 HOH A 81 381 46 HOH HOH . G 4 HOH A 82 382 6 HOH HOH . G 4 HOH A 83 383 40 HOH HOH . G 4 HOH A 84 384 49 HOH HOH . G 4 HOH A 85 385 48 HOH HOH . G 4 HOH A 86 386 54 HOH HOH . G 4 HOH A 87 387 77 HOH HOH . G 4 HOH A 88 388 78 HOH HOH . G 4 HOH A 89 389 83 HOH HOH . G 4 HOH A 90 390 73 HOH HOH . G 4 HOH A 91 391 97 HOH HOH . G 4 HOH A 92 392 80 HOH HOH . G 4 HOH A 93 393 127 HOH HOH . G 4 HOH A 94 394 44 HOH HOH . G 4 HOH A 95 395 130 HOH HOH . G 4 HOH A 96 396 67 HOH HOH . G 4 HOH A 97 397 101 HOH HOH . G 4 HOH A 98 398 88 HOH HOH . G 4 HOH A 99 399 95 HOH HOH . G 4 HOH A 100 400 105 HOH HOH . G 4 HOH A 101 401 36 HOH HOH . G 4 HOH A 102 402 75 HOH HOH . G 4 HOH A 103 403 129 HOH HOH . G 4 HOH A 104 404 90 HOH HOH . G 4 HOH A 105 405 68 HOH HOH . G 4 HOH A 106 406 121 HOH HOH . G 4 HOH A 107 407 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -2.739 75.872 203.589 1 77.02 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 3 -3.929 75.679 202.833 1 76.79 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 3 -1.636 76.474 202.694 1 76.45 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 3 -0.491 76.728 203.485 1 76.65 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #