data_6TOK # _model_server_result.job_id uvLEBZ1e9BqNRlSHlvR2Kw _model_server_result.datetime_utc '2024-11-04 20:12:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tok # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6TOK # _exptl.entry_id 6TOK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 455.941 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-[[5-chloranyl-2-(3,5-dimethylpyrazol-1-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOK _cell.length_a 68.594 _cell.length_b 68.594 _cell.length_c 168.727 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOK _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 34.297 -59.404147 28.121167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H26 Cl N7 O2' _chem_comp.formula_weight 455.941 _chem_comp.id NQT _chem_comp.mon_nstd_flag . _chem_comp.name 5-[[5-chloranyl-2-(3,5-dimethylpyrazol-1-yl)pyrimidin-4-yl]amino]-1-methyl-3-(3-methyl-3-oxidanyl-butyl)benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 NQT sing 255 n n C3 N NQT doub 256 n y C3 C2 NQT sing 257 n y N N1 NQT sing 258 n y N6 C21 NQT doub 259 n y N6 C5 NQT sing 260 n y C2 C1 NQT doub 261 n y N1 C5 NQT sing 262 n n N1 C1 NQT sing 263 n y C21 C20 NQT sing 264 n y C5 N2 NQT doub 265 n y C1 C NQT sing 266 n n C20 CL NQT sing 267 n n C20 C6 NQT doub 268 n y N2 C6 NQT sing 269 n y C6 N3 NQT sing 270 n n N3 C7 NQT sing 271 n n C7 C19 NQT doub 272 n y C7 C8 NQT sing 273 n y C19 C18 NQT sing 274 n y C8 C9 NQT doub 275 n y C13 C12 NQT sing 276 n n C18 C17 NQT doub 277 n y C14 C12 NQT sing 278 n n C11 C12 NQT sing 279 n n C11 C10 NQT sing 280 n n C9 C17 NQT sing 281 n y C9 N4 NQT sing 282 n n C12 O NQT sing 283 n n C17 N5 NQT sing 284 n n N4 C10 NQT sing 285 n n N4 C15 NQT sing 286 n n N5 C15 NQT sing 287 n n N5 C16 NQT sing 288 n n C15 O1 NQT doub 289 n n C11 H1 NQT sing 290 n n C11 H2 NQT sing 291 n n C14 H3 NQT sing 292 n n C14 H4 NQT sing 293 n n C14 H5 NQT sing 294 n n C21 H6 NQT sing 295 n n C4 H7 NQT sing 296 n n C4 H8 NQT sing 297 n n C4 H9 NQT sing 298 n n C2 H10 NQT sing 299 n n C H11 NQT sing 300 n n C H12 NQT sing 301 n n C H13 NQT sing 302 n n N3 H14 NQT sing 303 n n C19 H15 NQT sing 304 n n C18 H16 NQT sing 305 n n C8 H17 NQT sing 306 n n C16 H18 NQT sing 307 n n C16 H19 NQT sing 308 n n C16 H20 NQT sing 309 n n C10 H21 NQT sing 310 n n C10 H22 NQT sing 311 n n O H23 NQT sing 312 n n C13 H24 NQT sing 313 n n C13 H25 NQT sing 314 n n C13 H26 NQT sing 315 n n # _atom_sites.entry_id 6TOK _atom_sites.fract_transf_matrix[1][1] 0.014579 _atom_sites.fract_transf_matrix[1][2] 0.008417 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005927 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NQT A 1 201 200 NQT 257 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO A 1 203 3 EDO EDO . F 4 EDO A 1 204 4 EDO EDO . G 4 EDO A 1 205 5 EDO EDO . H 4 EDO A 1 206 6 EDO EDO . I 4 EDO A 1 207 7 EDO EDO . J 4 EDO A 1 208 8 EDO EDO . K 4 EDO A 1 209 9 EDO EDO . L 4 EDO A 1 210 11 EDO EDO . M 4 EDO A 1 211 12 EDO EDO . N 4 EDO A 1 212 13 EDO EDO . O 4 EDO A 1 213 14 EDO EDO . P 5 DMS A 1 214 2 DMS DMS . Q 5 DMS A 1 215 4 DMS DMS . R 5 DMS A 1 216 5 DMS DMS . S 5 DMS B 1 101 1 DMS DMS . T 6 HOH A 1 301 252 HOH HOH . T 6 HOH A 2 302 246 HOH HOH . T 6 HOH A 3 303 30 HOH HOH . T 6 HOH A 4 304 44 HOH HOH . T 6 HOH A 5 305 56 HOH HOH . T 6 HOH A 6 306 148 HOH HOH . T 6 HOH A 7 307 70 HOH HOH . T 6 HOH A 8 308 167 HOH HOH . T 6 HOH A 9 309 177 HOH HOH . T 6 HOH A 10 310 39 HOH HOH . T 6 HOH A 11 311 191 HOH HOH . T 6 HOH A 12 312 32 HOH HOH . T 6 HOH A 13 313 128 HOH HOH . T 6 HOH A 14 314 182 HOH HOH . T 6 HOH A 15 315 77 HOH HOH . T 6 HOH A 16 316 40 HOH HOH . T 6 HOH A 17 317 133 HOH HOH . T 6 HOH A 18 318 223 HOH HOH . T 6 HOH A 19 319 216 HOH HOH . T 6 HOH A 20 320 131 HOH HOH . T 6 HOH A 21 321 50 HOH HOH . T 6 HOH A 22 322 52 HOH HOH . T 6 HOH A 23 323 172 HOH HOH . T 6 HOH A 24 324 54 HOH HOH . T 6 HOH A 25 325 259 HOH HOH . T 6 HOH A 26 326 25 HOH HOH . T 6 HOH A 27 327 233 HOH HOH . T 6 HOH A 28 328 210 HOH HOH . T 6 HOH A 29 329 31 HOH HOH . T 6 HOH A 30 330 251 HOH HOH . T 6 HOH A 31 331 87 HOH HOH . T 6 HOH A 32 332 33 HOH HOH . T 6 HOH A 33 333 27 HOH HOH . T 6 HOH A 34 334 144 HOH HOH . T 6 HOH A 35 335 109 HOH HOH . T 6 HOH A 36 336 188 HOH HOH . T 6 HOH A 37 337 221 HOH HOH . T 6 HOH A 38 338 53 HOH HOH . T 6 HOH A 39 339 48 HOH HOH . T 6 HOH A 40 340 150 HOH HOH . T 6 HOH A 41 341 83 HOH HOH . T 6 HOH A 42 342 217 HOH HOH . T 6 HOH A 43 343 219 HOH HOH . T 6 HOH A 44 344 2 HOH HOH . T 6 HOH A 45 345 24 HOH HOH . T 6 HOH A 46 346 122 HOH HOH . T 6 HOH A 47 347 59 HOH HOH . T 6 HOH A 48 348 38 HOH HOH . T 6 HOH A 49 349 138 HOH HOH . T 6 HOH A 50 350 11 HOH HOH . T 6 HOH A 51 351 95 HOH HOH . T 6 HOH A 52 352 102 HOH HOH . T 6 HOH A 53 353 15 HOH HOH . T 6 HOH A 54 354 220 HOH HOH . T 6 HOH A 55 355 130 HOH HOH . T 6 HOH A 56 356 106 HOH HOH . T 6 HOH A 57 357 155 HOH HOH . T 6 HOH A 58 358 81 HOH HOH . T 6 HOH A 59 359 89 HOH HOH . T 6 HOH A 60 360 55 HOH HOH . T 6 HOH A 61 361 4 HOH HOH . T 6 HOH A 62 362 123 HOH HOH . T 6 HOH A 63 363 101 HOH HOH . T 6 HOH A 64 364 226 HOH HOH . T 6 HOH A 65 365 249 HOH HOH . T 6 HOH A 66 366 121 HOH HOH . T 6 HOH A 67 367 14 HOH HOH . T 6 HOH A 68 368 262 HOH HOH . T 6 HOH A 69 369 84 HOH HOH . T 6 HOH A 70 370 7 HOH HOH . T 6 HOH A 71 371 161 HOH HOH . T 6 HOH A 72 372 47 HOH HOH . T 6 HOH A 73 373 34 HOH HOH . T 6 HOH A 74 374 225 HOH HOH . T 6 HOH A 75 375 20 HOH HOH . T 6 HOH A 76 376 68 HOH HOH . T 6 HOH A 77 377 51 HOH HOH . T 6 HOH A 78 378 129 HOH HOH . T 6 HOH A 79 379 228 HOH HOH . T 6 HOH A 80 380 139 HOH HOH . T 6 HOH A 81 381 13 HOH HOH . T 6 HOH A 82 382 107 HOH HOH . T 6 HOH A 83 383 88 HOH HOH . T 6 HOH A 84 384 66 HOH HOH . T 6 HOH A 85 385 115 HOH HOH . T 6 HOH A 86 386 62 HOH HOH . T 6 HOH A 87 387 96 HOH HOH . T 6 HOH A 88 388 119 HOH HOH . T 6 HOH A 89 389 73 HOH HOH . T 6 HOH A 90 390 154 HOH HOH . T 6 HOH A 91 391 117 HOH HOH . T 6 HOH A 92 392 43 HOH HOH . T 6 HOH A 93 393 113 HOH HOH . T 6 HOH A 94 394 237 HOH HOH . T 6 HOH A 95 395 126 HOH HOH . T 6 HOH A 96 396 100 HOH HOH . T 6 HOH A 97 397 58 HOH HOH . T 6 HOH A 98 398 74 HOH HOH . T 6 HOH A 99 399 76 HOH HOH . T 6 HOH A 100 400 214 HOH HOH . T 6 HOH A 101 401 201 HOH HOH . T 6 HOH A 102 402 90 HOH HOH . T 6 HOH A 103 403 184 HOH HOH . T 6 HOH A 104 404 82 HOH HOH . T 6 HOH A 105 405 224 HOH HOH . T 6 HOH A 106 406 137 HOH HOH . T 6 HOH A 107 407 61 HOH HOH . T 6 HOH A 108 408 152 HOH HOH . T 6 HOH A 109 409 213 HOH HOH . T 6 HOH A 110 410 105 HOH HOH . T 6 HOH A 111 411 229 HOH HOH . T 6 HOH A 112 412 42 HOH HOH . T 6 HOH A 113 413 162 HOH HOH . T 6 HOH A 114 414 41 HOH HOH . T 6 HOH A 115 415 71 HOH HOH . T 6 HOH A 116 416 211 HOH HOH . T 6 HOH A 117 417 175 HOH HOH . T 6 HOH A 118 418 215 HOH HOH . T 6 HOH A 119 419 64 HOH HOH . T 6 HOH A 120 420 5 HOH HOH . T 6 HOH A 121 421 86 HOH HOH . T 6 HOH A 122 422 235 HOH HOH . T 6 HOH A 123 423 132 HOH HOH . T 6 HOH A 124 424 240 HOH HOH . T 6 HOH A 125 425 258 HOH HOH . T 6 HOH A 126 426 153 HOH HOH . T 6 HOH A 127 427 231 HOH HOH . T 6 HOH A 128 428 45 HOH HOH . T 6 HOH A 129 429 199 HOH HOH . T 6 HOH A 130 430 234 HOH HOH . T 6 HOH A 131 431 241 HOH HOH . T 6 HOH A 132 432 232 HOH HOH . T 6 HOH A 133 433 196 HOH HOH . T 6 HOH A 134 434 227 HOH HOH . T 6 HOH A 135 435 94 HOH HOH . T 6 HOH A 136 436 260 HOH HOH . T 6 HOH A 137 437 239 HOH HOH . T 6 HOH A 138 438 98 HOH HOH . T 6 HOH A 139 439 222 HOH HOH . T 6 HOH A 140 440 244 HOH HOH . T 6 HOH A 141 441 190 HOH HOH . T 6 HOH A 142 442 242 HOH HOH . T 6 HOH A 143 443 255 HOH HOH . T 6 HOH A 144 444 179 HOH HOH . T 6 HOH A 145 445 250 HOH HOH . T 6 HOH A 146 446 178 HOH HOH . T 6 HOH A 147 447 218 HOH HOH . T 6 HOH A 148 448 204 HOH HOH . T 6 HOH A 149 449 60 HOH HOH . T 6 HOH A 150 450 135 HOH HOH . T 6 HOH A 151 451 193 HOH HOH . T 6 HOH A 152 452 254 HOH HOH . T 6 HOH A 153 453 180 HOH HOH . T 6 HOH A 154 454 108 HOH HOH . T 6 HOH A 155 455 206 HOH HOH . T 6 HOH A 156 456 176 HOH HOH . T 6 HOH A 157 457 146 HOH HOH . T 6 HOH A 158 458 256 HOH HOH . T 6 HOH A 159 459 145 HOH HOH . T 6 HOH A 160 460 163 HOH HOH . T 6 HOH A 161 461 97 HOH HOH . T 6 HOH A 162 462 245 HOH HOH . T 6 HOH A 163 463 205 HOH HOH . T 6 HOH A 164 464 72 HOH HOH . T 6 HOH A 165 465 248 HOH HOH . T 6 HOH A 166 466 236 HOH HOH . T 6 HOH A 167 467 203 HOH HOH . T 6 HOH A 168 468 111 HOH HOH . T 6 HOH A 169 469 185 HOH HOH . T 6 HOH A 170 470 238 HOH HOH . T 6 HOH A 171 471 243 HOH HOH . U 6 HOH B 1 201 151 HOH HOH . U 6 HOH B 2 202 65 HOH HOH . U 6 HOH B 3 203 261 HOH HOH . U 6 HOH B 4 204 112 HOH HOH . U 6 HOH B 5 205 156 HOH HOH . U 6 HOH B 6 206 247 HOH HOH . U 6 HOH B 7 207 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 NQT . . . C 3 22.306 -13.724 18.36 1 24.75 ? C11 NQT 201 A 1 HETATM 2 C C14 NQT . . . C 3 23.338 -16.016 17.887 1 25.4 ? C14 NQT 201 A 1 HETATM 3 C C15 NQT . . . C 3 22.511 -10.921 19.986 1 27.86 ? C15 NQT 201 A 1 HETATM 4 C C20 NQT . . . C 3 27.605 -10.98 13.528 1 24.95 ? C20 NQT 201 A 1 HETATM 5 C C21 NQT . . . C 3 27.408 -10.767 12.187 1 25.67 ? C21 NQT 201 A 1 HETATM 6 CL CL NQT . . . C 3 29.076 -11.737 14.04 1 27.74 ? CL NQT 201 A 1 HETATM 7 N N6 NQT . . . C 3 26.301 -10.223 11.664 1 26.94 ? N6 NQT 201 A 1 HETATM 8 C C5 NQT . . . C 3 25.34 -9.897 12.555 1 28.15 ? C5 NQT 201 A 1 HETATM 9 N N1 NQT . . . C 3 24.106 -9.406 12.032 1 31.1 ? N1 NQT 201 A 1 HETATM 10 N N NQT . . . C 3 24.006 -9.046 10.736 1 31.29 ? N NQT 201 A 1 HETATM 11 C C3 NQT . . . C 3 22.749 -8.675 10.55 1 33.15 ? C3 NQT 201 A 1 HETATM 12 C C4 NQT . . . C 3 22.227 -8.216 9.245 1 33.46 ? C4 NQT 201 A 1 HETATM 13 C C2 NQT . . . C 3 22.008 -8.791 11.753 1 33.92 ? C2 NQT 201 A 1 HETATM 14 C C1 NQT . . . C 3 22.875 -9.259 12.694 1 34.51 ? C1 NQT 201 A 1 HETATM 15 C C NQT . . . C 3 22.604 -9.571 14.093 1 35.43 ? C NQT 201 A 1 HETATM 16 C C6 NQT . . . C 3 26.534 -10.549 14.378 1 24.71 ? C6 NQT 201 A 1 HETATM 17 N N2 NQT . . . C 3 25.411 -10.032 13.854 1 25.53 ? N2 NQT 201 A 1 HETATM 18 N N3 NQT . . . C 3 26.523 -10.367 15.662 1 24.3 ? N3 NQT 201 A 1 HETATM 19 C C7 NQT . . . C 3 25.731 -10.41 16.754 1 24.37 ? C7 NQT 201 A 1 HETATM 20 C C19 NQT . . . C 3 25.32 -9.074 16.942 1 26.53 ? C19 NQT 201 A 1 HETATM 21 C C18 NQT . . . C 3 24.316 -8.678 17.806 1 25.85 ? C18 NQT 201 A 1 HETATM 22 C C17 NQT . . . C 3 23.722 -9.655 18.54 1 26.04 ? C17 NQT 201 A 1 HETATM 23 C C9 NQT . . . C 3 24.116 -10.991 18.371 1 23.49 ? C9 NQT 201 A 1 HETATM 24 C C8 NQT . . . C 3 25.09 -11.361 17.477 1 23.07 ? C8 NQT 201 A 1 HETATM 25 N N5 NQT . . . C 3 22.73 -9.622 19.538 1 26.99 ? N5 NQT 201 A 1 HETATM 26 C C16 NQT . . . C 3 22.036 -8.452 20.016 1 28.1 ? C16 NQT 201 A 1 HETATM 27 O O1 NQT . . . C 3 21.736 -11.262 20.813 1 26.67 ? O1 NQT 201 A 1 HETATM 28 N N4 NQT . . . C 3 23.369 -11.752 19.251 1 25.19 ? N4 NQT 201 A 1 HETATM 29 C C10 NQT . . . C 3 23.342 -13.194 19.371 1 24.58 ? C10 NQT 201 A 1 HETATM 30 C C12 NQT . . . C 3 22.105 -15.249 18.387 1 25.08 ? C12 NQT 201 A 1 HETATM 31 O O NQT . . . C 3 21.829 -15.589 19.689 1 25.35 ? O NQT 201 A 1 HETATM 32 C C13 NQT . . . C 3 20.908 -15.578 17.5 1 27.93 ? C13 NQT 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #