data_6TON # _model_server_result.job_id hIQP4A875gGY2Zu5HhWAxA _model_server_result.datetime_utc '2025-01-10 07:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ton # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":101}' # _entry.id 6TON # _exptl.entry_id 6TON _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TON _cell.length_a 67.503 _cell.length_b 67.503 _cell.length_c 170.053 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TON _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1,4 B,E,G 1 2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 x-y,x,z+1/6 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 0 0 28.342167 3 'crystal symmetry operation' 8_545 x-y,-y-1,-z 1 0 0 0 -1 0 0 0 -1 33.7515 -58.459313 0 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.7515 -58.459313 28.342167 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 6TON _atom_sites.fract_transf_matrix[1][1] 0.014814 _atom_sites.fract_transf_matrix[1][2] 0.008553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NR5 A 1 201 200 NR5 400 . D 4 EDO A 1 202 2 EDO EDO . E 4 EDO B 1 101 1 EDO EDO . F 5 HOH A 1 301 111 HOH HOH . F 5 HOH A 2 302 90 HOH HOH . F 5 HOH A 3 303 39 HOH HOH . F 5 HOH A 4 304 102 HOH HOH . F 5 HOH A 5 305 95 HOH HOH . F 5 HOH A 6 306 71 HOH HOH . F 5 HOH A 7 307 2 HOH HOH . F 5 HOH A 8 308 5 HOH HOH . F 5 HOH A 9 309 114 HOH HOH . F 5 HOH A 10 310 21 HOH HOH . F 5 HOH A 11 311 100 HOH HOH . F 5 HOH A 12 312 1 HOH HOH . F 5 HOH A 13 313 81 HOH HOH . F 5 HOH A 14 314 107 HOH HOH . F 5 HOH A 15 315 10 HOH HOH . F 5 HOH A 16 316 3 HOH HOH . F 5 HOH A 17 317 34 HOH HOH . F 5 HOH A 18 318 105 HOH HOH . F 5 HOH A 19 319 109 HOH HOH . F 5 HOH A 20 320 15 HOH HOH . F 5 HOH A 21 321 22 HOH HOH . F 5 HOH A 22 322 6 HOH HOH . F 5 HOH A 23 323 48 HOH HOH . F 5 HOH A 24 324 8 HOH HOH . F 5 HOH A 25 325 51 HOH HOH . F 5 HOH A 26 326 25 HOH HOH . F 5 HOH A 27 327 32 HOH HOH . F 5 HOH A 28 328 12 HOH HOH . F 5 HOH A 29 329 4 HOH HOH . F 5 HOH A 30 330 53 HOH HOH . F 5 HOH A 31 331 11 HOH HOH . F 5 HOH A 32 332 52 HOH HOH . F 5 HOH A 33 333 36 HOH HOH . F 5 HOH A 34 334 7 HOH HOH . F 5 HOH A 35 335 19 HOH HOH . F 5 HOH A 36 336 113 HOH HOH . F 5 HOH A 37 337 28 HOH HOH . F 5 HOH A 38 338 64 HOH HOH . F 5 HOH A 39 339 96 HOH HOH . F 5 HOH A 40 340 89 HOH HOH . F 5 HOH A 41 341 44 HOH HOH . F 5 HOH A 42 342 27 HOH HOH . F 5 HOH A 43 343 9 HOH HOH . F 5 HOH A 44 344 33 HOH HOH . F 5 HOH A 45 345 24 HOH HOH . F 5 HOH A 46 346 20 HOH HOH . F 5 HOH A 47 347 38 HOH HOH . F 5 HOH A 48 348 23 HOH HOH . F 5 HOH A 49 349 108 HOH HOH . F 5 HOH A 50 350 13 HOH HOH . F 5 HOH A 51 351 83 HOH HOH . F 5 HOH A 52 352 50 HOH HOH . F 5 HOH A 53 353 79 HOH HOH . F 5 HOH A 54 354 56 HOH HOH . F 5 HOH A 55 355 37 HOH HOH . F 5 HOH A 56 356 26 HOH HOH . F 5 HOH A 57 357 88 HOH HOH . F 5 HOH A 58 358 17 HOH HOH . F 5 HOH A 59 359 14 HOH HOH . F 5 HOH A 60 360 18 HOH HOH . F 5 HOH A 61 361 94 HOH HOH . F 5 HOH A 62 362 55 HOH HOH . F 5 HOH A 63 363 112 HOH HOH . F 5 HOH A 64 364 86 HOH HOH . F 5 HOH A 65 365 91 HOH HOH . F 5 HOH A 66 366 85 HOH HOH . F 5 HOH A 67 367 29 HOH HOH . F 5 HOH A 68 368 45 HOH HOH . F 5 HOH A 69 369 110 HOH HOH . F 5 HOH A 70 370 30 HOH HOH . F 5 HOH A 71 371 31 HOH HOH . F 5 HOH A 72 372 80 HOH HOH . F 5 HOH A 73 373 106 HOH HOH . F 5 HOH A 74 374 99 HOH HOH . F 5 HOH A 75 375 103 HOH HOH . F 5 HOH A 76 376 63 HOH HOH . F 5 HOH A 77 377 69 HOH HOH . F 5 HOH A 78 378 62 HOH HOH . F 5 HOH A 79 379 77 HOH HOH . F 5 HOH A 80 380 35 HOH HOH . F 5 HOH A 81 381 74 HOH HOH . F 5 HOH A 82 382 70 HOH HOH . F 5 HOH A 83 383 67 HOH HOH . G 5 HOH B 1 201 101 HOH HOH . G 5 HOH B 2 202 72 HOH HOH . G 5 HOH B 3 203 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . A . E 4 16.146 -35.305 -1.157 0.47 46.46 ? C1 EDO 101 B 1 HETATM 2 O O1 EDO . A . E 4 16.036 -36.055 0.04 0.47 44.16 ? O1 EDO 101 B 1 HETATM 3 C C2 EDO . A . E 4 17.562 -34.692 -1.25 0.47 48.64 ? C2 EDO 101 B 1 HETATM 4 O O2 EDO . A . E 4 18.547 -35.696 -1.031 0.47 49.59 ? O2 EDO 101 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #