data_6TOO # _model_server_result.job_id ODQTzsj1Ogc9KJ8-bUQFrA _model_server_result.datetime_utc '2025-01-10 08:38:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6too # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6TOO # _exptl.entry_id 6TOO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 371.821 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-chloranyl-4-[[1-methyl-3-[(2~{S})-2-oxidanylbutyl]-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6TOO _cell.length_a 67.775 _cell.length_b 67.775 _cell.length_c 165.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOO _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 33.8875 -58.694872 27.548 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H18 Cl N5 O2' _chem_comp.formula_weight 371.821 _chem_comp.id NR8 _chem_comp.mon_nstd_flag . _chem_comp.name 2-chloranyl-4-[[1-methyl-3-[(2~{S})-2-oxidanylbutyl]-2-oxidanylidene-benzimidazol-5-yl]amino]pyridine-3-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C NR8 sing 246 n n N C NR8 doub 247 n y N C1 NR8 sing 248 n y C C4 NR8 sing 249 n y C1 C2 NR8 doub 250 n y C4 C5 NR8 sing 251 n n C4 C3 NR8 doub 252 n y C5 N1 NR8 trip 253 n n C2 C3 NR8 sing 254 n y C3 N2 NR8 sing 255 n n N2 C6 NR8 sing 256 n n C6 C12 NR8 doub 257 n y C6 C7 NR8 sing 258 n y O1 C15 NR8 sing 259 n n C12 C11 NR8 sing 260 n y C7 C8 NR8 doub 261 n y C17 C16 NR8 sing 262 n n C11 C10 NR8 doub 263 n y C15 C16 NR8 sing 264 n n C15 C14 NR8 sing 265 n n C8 C10 NR8 sing 266 n y C8 N3 NR8 sing 267 n n C10 N4 NR8 sing 268 n n N3 C14 NR8 sing 269 n n N3 C9 NR8 sing 270 n n N4 C9 NR8 sing 271 n n N4 C13 NR8 sing 272 n n C9 O NR8 doub 273 n n C1 H1 NR8 sing 274 n n C2 H2 NR8 sing 275 n n C7 H3 NR8 sing 276 n n C11 H4 NR8 sing 277 n n C12 H5 NR8 sing 278 n n C13 H6 NR8 sing 279 n n C13 H7 NR8 sing 280 n n C13 H8 NR8 sing 281 n n C14 H9 NR8 sing 282 n n C14 H10 NR8 sing 283 n n C15 H11 NR8 sing 284 n n C16 H12 NR8 sing 285 n n C16 H13 NR8 sing 286 n n C17 H14 NR8 sing 287 n n C17 H15 NR8 sing 288 n n C17 H16 NR8 sing 289 n n O1 H17 NR8 sing 290 n n N2 H18 NR8 sing 291 n n # _atom_sites.entry_id 6TOO _atom_sites.fract_transf_matrix[1][1] 0.014755 _atom_sites.fract_transf_matrix[1][2] 0.008519 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00605 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NR8 A 1 201 200 NR8 604 . D 4 EDO A 1 202 3 EDO EDO . E 4 EDO A 1 203 6 EDO EDO . F 4 EDO B 1 101 1 EDO EDO . G 5 HOH A 1 301 195 HOH HOH . G 5 HOH A 2 302 62 HOH HOH . G 5 HOH A 3 303 215 HOH HOH . G 5 HOH A 4 304 159 HOH HOH . G 5 HOH A 5 305 71 HOH HOH . G 5 HOH A 6 306 183 HOH HOH . G 5 HOH A 7 307 134 HOH HOH . G 5 HOH A 8 308 15 HOH HOH . G 5 HOH A 9 309 13 HOH HOH . G 5 HOH A 10 310 67 HOH HOH . G 5 HOH A 11 311 19 HOH HOH . G 5 HOH A 12 312 25 HOH HOH . G 5 HOH A 13 313 32 HOH HOH . G 5 HOH A 14 314 10 HOH HOH . G 5 HOH A 15 315 98 HOH HOH . G 5 HOH A 16 316 57 HOH HOH . G 5 HOH A 17 317 177 HOH HOH . G 5 HOH A 18 318 51 HOH HOH . G 5 HOH A 19 319 53 HOH HOH . G 5 HOH A 20 320 46 HOH HOH . G 5 HOH A 21 321 36 HOH HOH . G 5 HOH A 22 322 35 HOH HOH . G 5 HOH A 23 323 69 HOH HOH . G 5 HOH A 24 324 176 HOH HOH . G 5 HOH A 25 325 68 HOH HOH . G 5 HOH A 26 326 23 HOH HOH . G 5 HOH A 27 327 64 HOH HOH . G 5 HOH A 28 328 21 HOH HOH . G 5 HOH A 29 329 3 HOH HOH . G 5 HOH A 30 330 70 HOH HOH . G 5 HOH A 31 331 199 HOH HOH . G 5 HOH A 32 332 163 HOH HOH . G 5 HOH A 33 333 106 HOH HOH . G 5 HOH A 34 334 154 HOH HOH . G 5 HOH A 35 335 99 HOH HOH . G 5 HOH A 36 336 132 HOH HOH . G 5 HOH A 37 337 33 HOH HOH . G 5 HOH A 38 338 173 HOH HOH . G 5 HOH A 39 339 162 HOH HOH . G 5 HOH A 40 340 194 HOH HOH . G 5 HOH A 41 341 189 HOH HOH . G 5 HOH A 42 342 148 HOH HOH . G 5 HOH A 43 343 193 HOH HOH . G 5 HOH A 44 344 48 HOH HOH . G 5 HOH A 45 345 121 HOH HOH . G 5 HOH A 46 346 207 HOH HOH . G 5 HOH A 47 347 8 HOH HOH . G 5 HOH A 48 348 111 HOH HOH . G 5 HOH A 49 349 115 HOH HOH . G 5 HOH A 50 350 31 HOH HOH . G 5 HOH A 51 351 167 HOH HOH . G 5 HOH A 52 352 60 HOH HOH . G 5 HOH A 53 353 17 HOH HOH . G 5 HOH A 54 354 213 HOH HOH . G 5 HOH A 55 355 208 HOH HOH . G 5 HOH A 56 356 214 HOH HOH . G 5 HOH A 57 357 7 HOH HOH . G 5 HOH A 58 358 52 HOH HOH . G 5 HOH A 59 359 26 HOH HOH . G 5 HOH A 60 360 73 HOH HOH . G 5 HOH A 61 361 160 HOH HOH . G 5 HOH A 62 362 44 HOH HOH . G 5 HOH A 63 363 185 HOH HOH . G 5 HOH A 64 364 42 HOH HOH . G 5 HOH A 65 365 172 HOH HOH . G 5 HOH A 66 366 20 HOH HOH . G 5 HOH A 67 367 91 HOH HOH . G 5 HOH A 68 368 101 HOH HOH . G 5 HOH A 69 369 109 HOH HOH . G 5 HOH A 70 370 16 HOH HOH . G 5 HOH A 71 371 179 HOH HOH . G 5 HOH A 72 372 63 HOH HOH . G 5 HOH A 73 373 6 HOH HOH . G 5 HOH A 74 374 211 HOH HOH . G 5 HOH A 75 375 2 HOH HOH . G 5 HOH A 76 376 4 HOH HOH . G 5 HOH A 77 377 204 HOH HOH . G 5 HOH A 78 378 202 HOH HOH . G 5 HOH A 79 379 45 HOH HOH . G 5 HOH A 80 380 201 HOH HOH . G 5 HOH A 81 381 14 HOH HOH . G 5 HOH A 82 382 75 HOH HOH . G 5 HOH A 83 383 96 HOH HOH . G 5 HOH A 84 384 30 HOH HOH . G 5 HOH A 85 385 72 HOH HOH . G 5 HOH A 86 386 37 HOH HOH . G 5 HOH A 87 387 105 HOH HOH . G 5 HOH A 88 388 5 HOH HOH . G 5 HOH A 89 389 78 HOH HOH . G 5 HOH A 90 390 49 HOH HOH . G 5 HOH A 91 391 12 HOH HOH . G 5 HOH A 92 392 209 HOH HOH . G 5 HOH A 93 393 100 HOH HOH . G 5 HOH A 94 394 77 HOH HOH . G 5 HOH A 95 395 18 HOH HOH . G 5 HOH A 96 396 93 HOH HOH . G 5 HOH A 97 397 205 HOH HOH . G 5 HOH A 98 398 137 HOH HOH . G 5 HOH A 99 399 50 HOH HOH . G 5 HOH A 100 400 28 HOH HOH . G 5 HOH A 101 401 126 HOH HOH . G 5 HOH A 102 402 171 HOH HOH . G 5 HOH A 103 403 34 HOH HOH . G 5 HOH A 104 404 197 HOH HOH . G 5 HOH A 105 405 85 HOH HOH . G 5 HOH A 106 406 55 HOH HOH . G 5 HOH A 107 407 104 HOH HOH . G 5 HOH A 108 408 118 HOH HOH . G 5 HOH A 109 409 65 HOH HOH . G 5 HOH A 110 410 112 HOH HOH . G 5 HOH A 111 411 135 HOH HOH . G 5 HOH A 112 412 180 HOH HOH . G 5 HOH A 113 413 191 HOH HOH . G 5 HOH A 114 414 119 HOH HOH . G 5 HOH A 115 415 22 HOH HOH . G 5 HOH A 116 416 54 HOH HOH . G 5 HOH A 117 417 136 HOH HOH . G 5 HOH A 118 418 43 HOH HOH . G 5 HOH A 119 419 198 HOH HOH . G 5 HOH A 120 420 40 HOH HOH . G 5 HOH A 121 421 147 HOH HOH . G 5 HOH A 122 422 84 HOH HOH . G 5 HOH A 123 423 94 HOH HOH . G 5 HOH A 124 424 61 HOH HOH . G 5 HOH A 125 425 175 HOH HOH . G 5 HOH A 126 426 143 HOH HOH . G 5 HOH A 127 427 79 HOH HOH . G 5 HOH A 128 428 24 HOH HOH . G 5 HOH A 129 429 11 HOH HOH . G 5 HOH A 130 430 58 HOH HOH . G 5 HOH A 131 431 83 HOH HOH . G 5 HOH A 132 432 117 HOH HOH . G 5 HOH A 133 433 108 HOH HOH . G 5 HOH A 134 434 157 HOH HOH . G 5 HOH A 135 435 139 HOH HOH . G 5 HOH A 136 436 97 HOH HOH . G 5 HOH A 137 437 39 HOH HOH . G 5 HOH A 138 438 133 HOH HOH . G 5 HOH A 139 439 168 HOH HOH . G 5 HOH A 140 440 89 HOH HOH . G 5 HOH A 141 441 107 HOH HOH . G 5 HOH A 142 442 110 HOH HOH . G 5 HOH A 143 443 152 HOH HOH . G 5 HOH A 144 444 80 HOH HOH . G 5 HOH A 145 445 196 HOH HOH . G 5 HOH A 146 446 187 HOH HOH . G 5 HOH A 147 447 130 HOH HOH . G 5 HOH A 148 448 1 HOH HOH . G 5 HOH A 149 449 88 HOH HOH . G 5 HOH A 150 450 74 HOH HOH . G 5 HOH A 151 451 38 HOH HOH . G 5 HOH A 152 452 138 HOH HOH . G 5 HOH A 153 453 81 HOH HOH . G 5 HOH A 154 454 158 HOH HOH . G 5 HOH A 155 455 123 HOH HOH . G 5 HOH A 156 456 66 HOH HOH . G 5 HOH A 157 457 59 HOH HOH . G 5 HOH A 158 458 164 HOH HOH . G 5 HOH A 159 459 188 HOH HOH . G 5 HOH A 160 460 131 HOH HOH . G 5 HOH A 161 461 90 HOH HOH . G 5 HOH A 162 462 116 HOH HOH . G 5 HOH A 163 463 181 HOH HOH . G 5 HOH A 164 464 129 HOH HOH . G 5 HOH A 165 465 203 HOH HOH . G 5 HOH A 166 466 165 HOH HOH . G 5 HOH A 167 467 184 HOH HOH . G 5 HOH A 168 468 114 HOH HOH . G 5 HOH A 169 469 120 HOH HOH . G 5 HOH A 170 470 102 HOH HOH . G 5 HOH A 171 471 124 HOH HOH . G 5 HOH A 172 472 186 HOH HOH . G 5 HOH A 173 473 182 HOH HOH . G 5 HOH A 174 474 122 HOH HOH . G 5 HOH A 175 475 192 HOH HOH . G 5 HOH A 176 476 87 HOH HOH . G 5 HOH A 177 477 174 HOH HOH . G 5 HOH A 178 478 151 HOH HOH . H 5 HOH B 1 201 86 HOH HOH . H 5 HOH B 2 202 27 HOH HOH . H 5 HOH B 3 203 82 HOH HOH . H 5 HOH B 4 204 29 HOH HOH . H 5 HOH B 5 205 170 HOH HOH . H 5 HOH B 6 206 95 HOH HOH . H 5 HOH B 7 207 153 HOH HOH . H 5 HOH B 8 208 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NR8 . . . C 3 25.08 -8.99 12.197 0.87 24.13 ? C1 NR8 201 A 1 HETATM 2 C C2 NR8 . . . C 3 25.22 -9.323 13.524 0.87 21.24 ? C2 NR8 201 A 1 HETATM 3 C C3 NR8 . . . C 3 26.406 -9.911 13.941 0.87 18.57 ? C3 NR8 201 A 1 HETATM 4 C C4 NR8 . . . C 3 27.404 -10.157 12.977 0.87 17.71 ? C4 NR8 201 A 1 HETATM 5 C C5 NR8 . . . C 3 28.613 -10.837 13.341 0.87 14.68 ? C5 NR8 201 A 1 HETATM 6 C C6 NR8 . . . C 3 25.655 -9.895 16.224 0.87 17.28 ? C6 NR8 201 A 1 HETATM 7 C C7 NR8 . . . C 3 25.114 -10.961 16.926 0.87 15.4 ? C7 NR8 201 A 1 HETATM 8 C C8 NR8 . . . C 3 24.11 -10.703 17.834 0.87 16.39 ? C8 NR8 201 A 1 HETATM 9 C C9 NR8 . . . C 3 22.4 -10.792 19.399 0.87 20.59 ? C9 NR8 201 A 1 HETATM 10 C C10 NR8 . . . C 3 23.651 -9.423 18.055 0.87 17.97 ? C10 NR8 201 A 1 HETATM 11 C C11 NR8 . . . C 3 24.194 -8.351 17.366 0.87 17.71 ? C11 NR8 201 A 1 HETATM 12 C C12 NR8 . . . C 3 25.201 -8.599 16.451 0.87 17.3 ? C12 NR8 201 A 1 HETATM 13 C C13 NR8 . . . C 3 21.854 -8.354 19.515 0.87 20.57 ? C13 NR8 201 A 1 HETATM 14 C C14 NR8 . A . C 3 23.43 -13.15 18.685 0.46 20.3 ? C14 NR8 201 A 1 HETATM 15 C C14 NR8 . B . C 3 23.444 -13.142 18.69 0.53 21.39 ? C14 NR8 201 A 1 HETATM 16 C C15 NR8 . A . C 3 22.442 -13.776 17.717 0.46 19.35 ? C15 NR8 201 A 1 HETATM 17 C C15 NR8 . B . C 3 22.652 -13.758 17.551 0.53 22.04 ? C15 NR8 201 A 1 HETATM 18 C C16 NR8 . A . C 3 22.5 -15.285 17.725 0.46 19.54 ? C16 NR8 201 A 1 HETATM 19 C C16 NR8 . B . C 3 22.556 -15.255 17.689 0.53 23.63 ? C16 NR8 201 A 1 HETATM 20 C C17 NR8 . A . C 3 23.806 -15.894 17.293 0.46 17.9 ? C17 NR8 201 A 1 HETATM 21 C C17 NR8 . B . C 3 23.821 -15.97 17.318 0.53 22.48 ? C17 NR8 201 A 1 HETATM 22 O O NR8 . . . C 3 21.568 -11.19 20.18 0.87 20.96 ? O NR8 201 A 1 HETATM 23 N N3 NR8 . . . C 3 23.323 -11.582 18.683 0.87 18.26 ? N3 NR8 201 A 1 HETATM 24 O O1 NR8 . A . C 3 22.701 -13.298 16.4 0.46 21.44 ? O1 NR8 201 A 1 HETATM 25 O O1 NR8 . B . C 3 21.344 -13.198 17.529 0.53 24 ? O1 NR8 201 A 1 HETATM 26 N N4 NR8 . . . C 3 22.615 -9.488 19.007 0.87 19.67 ? N4 NR8 201 A 1 HETATM 27 N N2 NR8 . . . C 3 26.614 -10.181 15.253 0.87 16.35 ? N2 NR8 201 A 1 HETATM 28 N N NR8 . . . C 3 26.023 -9.186 11.275 0.87 25.26 ? N NR8 201 A 1 HETATM 29 C C NR8 . . . C 3 27.142 -9.747 11.68 0.87 25.23 ? C NR8 201 A 1 HETATM 30 CL CL NR8 . . . C 3 28.371 -9.913 10.496 0.87 39.34 ? CL NR8 201 A 1 HETATM 31 N N1 NR8 . . . C 3 29.58 -11.371 13.6 0.87 16.38 ? N1 NR8 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #