data_6TOS # _model_server_result.job_id Nd-ZGtvNDQDyoW4mfFCakQ _model_server_result.datetime_utc '2024-11-05 08:07:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tos # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":406}' # _entry.id 6TOS # _exptl.entry_id 6TOS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 308.434 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl 1-thio-beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 27 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.43 _cell.angle_gamma 90 _cell.entry_id 6TOS _cell.length_a 59.692 _cell.length_b 146.19 _cell.length_c 71.508 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,PA 1 1 B,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,QA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N ? 6 N N N ? 6 O N N ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 AA N N ? 6 BA N N ? 6 CA N N ? 6 DA N N ? 6 EA N N ? 6 FA N N ? 6 GA N N ? 6 HA N N ? 6 IA N N ? 6 JA N N ? 6 KA N N ? 6 LA N N ? 6 MA N N ? 6 NA N N ? 6 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A OD1 ASP 68 A ASP 92 1_555 U NA NA . A NA 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc2 A OH TYR 255 A TYR 311 1_555 U NA NA . A NA 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? # _chem_comp.formula 'C14 H28 O5 S' _chem_comp.formula_weight 308.434 _chem_comp.id SOG _chem_comp.mon_nstd_flag . _chem_comp.name 'octyl 1-thio-beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SOG sing 523 n n C1 S1 SOG sing 524 n n C1 O5 SOG sing 525 n n C1 H1 SOG sing 526 n n C2 C3 SOG sing 527 n n C2 O2 SOG sing 528 n n C2 H2 SOG sing 529 n n C3 C4 SOG sing 530 n n C3 O3 SOG sing 531 n n C3 H3 SOG sing 532 n n C4 C5 SOG sing 533 n n C4 O4 SOG sing 534 n n C4 H4 SOG sing 535 n n C5 C6 SOG sing 536 n n C5 O5 SOG sing 537 n n C5 H5 SOG sing 538 n n C6 O6 SOG sing 539 n n C6 H61 SOG sing 540 n n C6 H62 SOG sing 541 n n C1' C2' SOG sing 542 n n C1' S1 SOG sing 543 n n C1' "H1'1" SOG sing 544 n n C1' "H1'2" SOG sing 545 n n C2' C3' SOG sing 546 n n C2' "H2'1" SOG sing 547 n n C2' "H2'2" SOG sing 548 n n C3' C4' SOG sing 549 n n C3' "H3'1" SOG sing 550 n n C3' "H3'2" SOG sing 551 n n C4' C5' SOG sing 552 n n C4' "H4'1" SOG sing 553 n n C4' "H4'2" SOG sing 554 n n C5' C6' SOG sing 555 n n C5' "H5'1" SOG sing 556 n n C5' "H5'2" SOG sing 557 n n C6' C7' SOG sing 558 n n C6' "H6'1" SOG sing 559 n n C6' "H6'2" SOG sing 560 n n C7' C8' SOG sing 561 n n C7' "H7'1" SOG sing 562 n n C7' "H7'2" SOG sing 563 n n C8' "H8'1" SOG sing 564 n n C8' "H8'2" SOG sing 565 n n C8' "H8'3" SOG sing 566 n n O2 HO2 SOG sing 567 n n O3 HO3 SOG sing 568 n n O4 HO4 SOG sing 569 n n O6 HO6 SOG sing 570 n n # _atom_sites.entry_id 6TOS _atom_sites.fract_transf_matrix[1][1] 0.016753 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006915 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00684 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NRE A 1 401 401 NRE UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 CIT A 1 403 601 CIT CIT . F 4 CIT A 1 404 701 CIT CIT . G 5 SO4 A 1 405 3 SO4 SO4 . H 5 SO4 A 1 406 4 SO4 SO4 . I 6 SOG A 1 407 3 SOG SOG . J 6 SOG A 1 408 6 SOG SOG . K 6 SOG A 1 409 16 SOG SOG . L 6 SOG A 1 410 17 SOG SOG . M 6 SOG A 1 411 19 SOG SOG . N 6 SOG A 1 412 24 SOG SOG . O 6 SOG A 1 413 26 SOG SOG . P 6 SOG A 1 414 29 SOG SOG . Q 6 SOG A 1 415 31 SOG SOG . R 6 SOG A 1 416 33 SOG SOG . S 6 SOG A 1 417 34 SOG SOG . T 6 SOG A 1 418 35 SOG SOG . U 7 NA A 1 419 1 NA NA . V 2 NRE B 1 401 401 NRE UNL . W 5 SO4 B 1 402 1 SO4 SO4 . X 5 SO4 B 1 403 2 SO4 SO4 . Y 8 PGW B 1 404 1 PGW PGW . Z 8 PGW B 1 405 2 PGW PGW . AA 6 SOG B 1 406 1 SOG SOG . BA 6 SOG B 1 407 2 SOG SOG . CA 6 SOG B 1 408 4 SOG SOG . DA 6 SOG B 1 409 5 SOG SOG . EA 6 SOG B 1 410 9 SOG SOG . FA 6 SOG B 1 411 10 SOG SOG . GA 6 SOG B 1 412 14 SOG SOG . HA 6 SOG B 1 413 22 SOG SOG . IA 6 SOG B 1 414 27 SOG SOG . JA 6 SOG B 1 415 28 SOG SOG . KA 6 SOG B 1 416 30 SOG SOG . LA 6 SOG B 1 417 32 SOG SOG . MA 6 SOG B 1 418 36 SOG SOG . NA 6 SOG B 1 419 37 SOG SOG . OA 6 SOG B 1 420 38 SOG SOG . PA 9 HOH A 1 501 3 HOH HOH . PA 9 HOH A 2 502 38 HOH HOH . PA 9 HOH A 3 503 12 HOH HOH . PA 9 HOH A 4 504 62 HOH HOH . PA 9 HOH A 5 505 11 HOH HOH . PA 9 HOH A 6 506 35 HOH HOH . PA 9 HOH A 7 507 51 HOH HOH . PA 9 HOH A 8 508 77 HOH HOH . PA 9 HOH A 9 509 83 HOH HOH . PA 9 HOH A 10 510 61 HOH HOH . PA 9 HOH A 11 511 84 HOH HOH . PA 9 HOH A 12 512 8 HOH HOH . PA 9 HOH A 13 513 29 HOH HOH . PA 9 HOH A 14 514 131 HOH HOH . PA 9 HOH A 15 515 63 HOH HOH . PA 9 HOH A 16 516 60 HOH HOH . PA 9 HOH A 17 517 7 HOH HOH . PA 9 HOH A 18 518 151 HOH HOH . PA 9 HOH A 19 519 79 HOH HOH . PA 9 HOH A 20 520 6 HOH HOH . PA 9 HOH A 21 521 2 HOH HOH . PA 9 HOH A 22 522 116 HOH HOH . PA 9 HOH A 23 523 9 HOH HOH . PA 9 HOH A 24 524 130 HOH HOH . PA 9 HOH A 25 525 34 HOH HOH . PA 9 HOH A 26 526 119 HOH HOH . PA 9 HOH A 27 527 133 HOH HOH . PA 9 HOH A 28 528 118 HOH HOH . PA 9 HOH A 29 529 99 HOH HOH . PA 9 HOH A 30 530 47 HOH HOH . PA 9 HOH A 31 531 107 HOH HOH . PA 9 HOH A 32 532 128 HOH HOH . PA 9 HOH A 33 533 80 HOH HOH . PA 9 HOH A 34 534 134 HOH HOH . PA 9 HOH A 35 535 36 HOH HOH . PA 9 HOH A 36 536 10 HOH HOH . PA 9 HOH A 37 537 124 HOH HOH . PA 9 HOH A 38 538 1 HOH HOH . PA 9 HOH A 39 539 5 HOH HOH . PA 9 HOH A 40 540 135 HOH HOH . PA 9 HOH A 41 541 101 HOH HOH . PA 9 HOH A 42 542 86 HOH HOH . PA 9 HOH A 43 543 37 HOH HOH . PA 9 HOH A 44 544 32 HOH HOH . PA 9 HOH A 45 545 121 HOH HOH . PA 9 HOH A 46 546 115 HOH HOH . PA 9 HOH A 47 547 82 HOH HOH . PA 9 HOH A 48 548 48 HOH HOH . PA 9 HOH A 49 549 4 HOH HOH . PA 9 HOH A 50 550 132 HOH HOH . PA 9 HOH A 51 551 78 HOH HOH . PA 9 HOH A 52 552 50 HOH HOH . PA 9 HOH A 53 553 28 HOH HOH . PA 9 HOH A 54 554 85 HOH HOH . PA 9 HOH A 55 555 81 HOH HOH . PA 9 HOH A 56 556 117 HOH HOH . PA 9 HOH A 57 557 141 HOH HOH . PA 9 HOH A 58 558 120 HOH HOH . PA 9 HOH A 59 559 129 HOH HOH . PA 9 HOH A 60 560 49 HOH HOH . PA 9 HOH A 61 561 123 HOH HOH . PA 9 HOH A 62 562 102 HOH HOH . PA 9 HOH A 63 563 106 HOH HOH . PA 9 HOH A 64 564 125 HOH HOH . PA 9 HOH A 65 565 140 HOH HOH . PA 9 HOH A 66 566 144 HOH HOH . PA 9 HOH A 67 567 145 HOH HOH . QA 9 HOH B 1 501 27 HOH HOH . QA 9 HOH B 2 502 66 HOH HOH . QA 9 HOH B 3 503 33 HOH HOH . QA 9 HOH B 4 504 109 HOH HOH . QA 9 HOH B 5 505 87 HOH HOH . QA 9 HOH B 6 506 65 HOH HOH . QA 9 HOH B 7 507 55 HOH HOH . QA 9 HOH B 8 508 20 HOH HOH . QA 9 HOH B 9 509 24 HOH HOH . QA 9 HOH B 10 510 26 HOH HOH . QA 9 HOH B 11 511 71 HOH HOH . QA 9 HOH B 12 512 96 HOH HOH . QA 9 HOH B 13 513 75 HOH HOH . QA 9 HOH B 14 514 22 HOH HOH . QA 9 HOH B 15 515 17 HOH HOH . QA 9 HOH B 16 516 40 HOH HOH . QA 9 HOH B 17 517 59 HOH HOH . QA 9 HOH B 18 518 58 HOH HOH . QA 9 HOH B 19 519 54 HOH HOH . QA 9 HOH B 20 520 95 HOH HOH . QA 9 HOH B 21 521 72 HOH HOH . QA 9 HOH B 22 522 25 HOH HOH . QA 9 HOH B 23 523 21 HOH HOH . QA 9 HOH B 24 524 31 HOH HOH . QA 9 HOH B 25 525 16 HOH HOH . QA 9 HOH B 26 526 91 HOH HOH . QA 9 HOH B 27 527 89 HOH HOH . QA 9 HOH B 28 528 94 HOH HOH . QA 9 HOH B 29 529 43 HOH HOH . QA 9 HOH B 30 530 137 HOH HOH . QA 9 HOH B 31 531 15 HOH HOH . QA 9 HOH B 32 532 44 HOH HOH . QA 9 HOH B 33 533 76 HOH HOH . QA 9 HOH B 34 534 18 HOH HOH . QA 9 HOH B 35 535 100 HOH HOH . QA 9 HOH B 36 536 74 HOH HOH . QA 9 HOH B 37 537 136 HOH HOH . QA 9 HOH B 38 538 64 HOH HOH . QA 9 HOH B 39 539 41 HOH HOH . QA 9 HOH B 40 540 111 HOH HOH . QA 9 HOH B 41 541 52 HOH HOH . QA 9 HOH B 42 542 93 HOH HOH . QA 9 HOH B 43 543 104 HOH HOH . QA 9 HOH B 44 544 122 HOH HOH . QA 9 HOH B 45 545 88 HOH HOH . QA 9 HOH B 46 546 67 HOH HOH . QA 9 HOH B 47 547 42 HOH HOH . QA 9 HOH B 48 548 70 HOH HOH . QA 9 HOH B 49 549 68 HOH HOH . QA 9 HOH B 50 550 46 HOH HOH . QA 9 HOH B 51 551 23 HOH HOH . QA 9 HOH B 52 552 53 HOH HOH . QA 9 HOH B 53 553 148 HOH HOH . QA 9 HOH B 54 554 14 HOH HOH . QA 9 HOH B 55 555 73 HOH HOH . QA 9 HOH B 56 556 45 HOH HOH . QA 9 HOH B 57 557 19 HOH HOH . QA 9 HOH B 58 558 114 HOH HOH . QA 9 HOH B 59 559 13 HOH HOH . QA 9 HOH B 60 560 112 HOH HOH . QA 9 HOH B 61 561 39 HOH HOH . QA 9 HOH B 62 562 30 HOH HOH . QA 9 HOH B 63 563 150 HOH HOH . QA 9 HOH B 64 564 98 HOH HOH . QA 9 HOH B 65 565 127 HOH HOH . QA 9 HOH B 66 566 147 HOH HOH . QA 9 HOH B 67 567 57 HOH HOH . QA 9 HOH B 68 568 138 HOH HOH . QA 9 HOH B 69 569 105 HOH HOH . QA 9 HOH B 70 570 126 HOH HOH . QA 9 HOH B 71 571 108 HOH HOH . QA 9 HOH B 72 572 90 HOH HOH . QA 9 HOH B 73 573 92 HOH HOH . QA 9 HOH B 74 574 56 HOH HOH . QA 9 HOH B 75 575 113 HOH HOH . QA 9 HOH B 76 576 143 HOH HOH . QA 9 HOH B 77 577 97 HOH HOH . QA 9 HOH B 78 578 142 HOH HOH . QA 9 HOH B 79 579 149 HOH HOH . QA 9 HOH B 80 580 110 HOH HOH . QA 9 HOH B 81 581 103 HOH HOH . QA 9 HOH B 82 582 146 HOH HOH . QA 9 HOH B 83 583 69 HOH HOH . QA 9 HOH B 84 584 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SOG . . . AA 6 -34.103 -62.402 85.243 1 51.16 ? C1 SOG 406 B 1 HETATM 2 C C2 SOG . . . AA 6 -34.185 -60.96 85.75 1 49.34 ? C2 SOG 406 B 1 HETATM 3 C C3 SOG . . . AA 6 -32.81 -60.301 85.631 1 50.7 ? C3 SOG 406 B 1 HETATM 4 C C4 SOG . . . AA 6 -31.72 -61.149 86.283 1 52.21 ? C4 SOG 406 B 1 HETATM 5 C C5 SOG . . . AA 6 -31.803 -62.632 85.869 1 51.75 ? C5 SOG 406 B 1 HETATM 6 C C6 SOG . . . AA 6 -30.95 -63.524 86.749 1 51.33 ? C6 SOG 406 B 1 HETATM 7 C C1' SOG . . . AA 6 -36.153 -63.118 87.041 1 45.87 ? C1' SOG 406 B 1 HETATM 8 C C2' SOG . . . AA 6 -37.385 -63.959 87.296 1 47.64 ? C2' SOG 406 B 1 HETATM 9 C C3' SOG . . . AA 6 -38.094 -63.574 88.567 1 47 ? C3' SOG 406 B 1 HETATM 10 C C4' SOG . . . AA 6 -39.409 -62.88 88.325 1 45.44 ? C4' SOG 406 B 1 HETATM 11 C C5' SOG . . . AA 6 -40.003 -62.274 89.566 1 42.87 ? C5' SOG 406 B 1 HETATM 12 C C6' SOG . . . AA 6 -41.173 -61.375 89.301 1 45.88 ? C6' SOG 406 B 1 HETATM 13 C C7' SOG . . . AA 6 -42.499 -61.991 89.639 1 50.23 ? C7' SOG 406 B 1 HETATM 14 C C8' SOG . . . AA 6 -42.962 -61.711 91.042 1 50.02 ? C8' SOG 406 B 1 HETATM 15 S S1 SOG . . . AA 6 -35.678 -63.286 85.29 1 51.81 ? S1 SOG 406 B 1 HETATM 16 O O2 SOG . . . AA 6 -35.154 -60.241 84.996 1 44.39 ? O2 SOG 406 B 1 HETATM 17 O O3 SOG . . . AA 6 -32.82 -59 86.215 1 49.04 ? O3 SOG 406 B 1 HETATM 18 O O4 SOG . . . AA 6 -30.434 -60.641 85.927 1 55.65 ? O4 SOG 406 B 1 HETATM 19 O O5 SOG . . . AA 6 -33.148 -63.124 86.005 1 54 ? O5 SOG 406 B 1 HETATM 20 O O6 SOG . . . AA 6 -29.571 -63.326 86.477 1 56.23 ? O6 SOG 406 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #