data_6TOT # _model_server_result.job_id MxMOuRdScpP1uHIkvflymA _model_server_result.datetime_utc '2024-11-22 12:18:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6TOT # _exptl.entry_id 6TOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 410.417 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1~{R},2~{S})-2-[(2,4-dimethylpyrimidin-5-yl)oxymethyl]-~{N}-(5-fluoranylpyridin-2-yl)-2-(3-fluorophenyl)cyclopropane-1-carboxamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.25 _cell.angle_gamma 90 _cell.entry_id 6TOT _cell.length_a 59.725 _cell.length_b 145.715 _cell.length_c 71.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,U 1 1 B,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C22 H20 F2 N4 O2' _chem_comp.formula_weight 410.417 _chem_comp.id NRK _chem_comp.mon_nstd_flag . _chem_comp.name (1~{R},2~{S})-2-[(2,4-dimethylpyrimidin-5-yl)oxymethyl]-~{N}-(5-fluoranylpyridin-2-yl)-2-(3-fluorophenyl)cyclopropane-1-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C01 NRK sing 237 n n C02 C03 NRK sing 238 n n C01 C05 NRK sing 239 n n C01 C03 NRK sing 240 n n O19 C05 NRK doub 241 n n C05 N20 NRK sing 242 n n N20 C21 NRK sing 243 n n C21 N26 NRK doub 244 n y C21 C22 NRK sing 245 n y N26 C25 NRK sing 246 n y C25 C24 NRK doub 247 n y C22 C23 NRK doub 248 n y C03 C06 NRK sing 249 n n C03 C04 NRK sing 250 n n C24 C23 NRK sing 251 n y C24 F29 NRK sing 252 n n C06 C11 NRK doub 253 n y C06 C07 NRK sing 254 n y C11 C10 NRK sing 255 n y C04 O12 NRK sing 256 n n C07 C08 NRK doub 257 n y C10 C09 NRK doub 258 n y C08 C09 NRK sing 259 n y C08 F30 NRK sing 260 n n O12 C13 NRK sing 261 n n C18 C13 NRK doub 262 n y C18 N17 NRK sing 263 n y C13 C14 NRK sing 264 n y N17 C16 NRK doub 265 n y C14 C28 NRK sing 266 n n C14 N15 NRK doub 267 n y C16 N15 NRK sing 268 n y C16 C27 NRK sing 269 n n C01 H011 NRK sing 270 n n C02 H021 NRK sing 271 n n C02 H022 NRK sing 272 n n C04 H041 NRK sing 273 n n C04 H042 NRK sing 274 n n C07 H071 NRK sing 275 n n C09 H091 NRK sing 276 n n C10 H101 NRK sing 277 n n C11 H111 NRK sing 278 n n C18 H181 NRK sing 279 n n N20 H201 NRK sing 280 n n C22 H221 NRK sing 281 n n C23 H231 NRK sing 282 n n C25 H251 NRK sing 283 n n C27 H271 NRK sing 284 n n C27 H273 NRK sing 285 n n C27 H272 NRK sing 286 n n C28 H282 NRK sing 287 n n C28 H281 NRK sing 288 n n C28 H283 NRK sing 289 n n # _atom_sites.entry_id 6TOT _atom_sites.fract_transf_matrix[1][1] 0.016743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NRK A 1 401 401 NRK UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 SO4 A 1 403 1 SO4 SO4 . F 4 SO4 A 1 404 3 SO4 SO4 . G 5 SOG A 1 405 2 SOG SOG . H 5 SOG A 1 406 3 SOG SOG . I 5 SOG A 1 407 13 SOG SOG . J 5 SOG A 1 408 14 SOG SOG . K 6 PGW A 1 409 1 PGW PGW . L 6 PGW A 1 410 2 PGW PGW . M 2 NRK B 1 401 401 NRK UNL . N 4 SO4 B 1 402 2 SO4 SO4 . O 4 SO4 B 1 403 4 SO4 SO4 . P 5 SOG B 1 404 1 SOG SOG . Q 5 SOG B 1 405 4 SOG SOG . R 5 SOG B 1 406 8 SOG SOG . S 5 SOG B 1 407 10 SOG SOG . T 5 SOG B 1 408 11 SOG SOG . U 7 HOH A 1 501 38 HOH HOH . U 7 HOH A 2 502 18 HOH HOH . U 7 HOH A 3 503 12 HOH HOH . U 7 HOH A 4 504 39 HOH HOH . U 7 HOH A 5 505 28 HOH HOH . U 7 HOH A 6 506 31 HOH HOH . U 7 HOH A 7 507 7 HOH HOH . U 7 HOH A 8 508 11 HOH HOH . U 7 HOH A 9 509 8 HOH HOH . U 7 HOH A 10 510 29 HOH HOH . U 7 HOH A 11 511 1 HOH HOH . U 7 HOH A 12 512 15 HOH HOH . U 7 HOH A 13 513 32 HOH HOH . U 7 HOH A 14 514 16 HOH HOH . U 7 HOH A 15 515 17 HOH HOH . U 7 HOH A 16 516 30 HOH HOH . U 7 HOH A 17 517 10 HOH HOH . U 7 HOH A 18 518 40 HOH HOH . V 7 HOH B 1 501 6 HOH HOH . V 7 HOH B 2 502 14 HOH HOH . V 7 HOH B 3 503 26 HOH HOH . V 7 HOH B 4 504 41 HOH HOH . V 7 HOH B 5 505 34 HOH HOH . V 7 HOH B 6 506 23 HOH HOH . V 7 HOH B 7 507 5 HOH HOH . V 7 HOH B 8 508 3 HOH HOH . V 7 HOH B 9 509 36 HOH HOH . V 7 HOH B 10 510 9 HOH HOH . V 7 HOH B 11 511 20 HOH HOH . V 7 HOH B 12 512 25 HOH HOH . V 7 HOH B 13 513 2 HOH HOH . V 7 HOH B 14 514 4 HOH HOH . V 7 HOH B 15 515 22 HOH HOH . V 7 HOH B 16 516 19 HOH HOH . V 7 HOH B 17 517 24 HOH HOH . V 7 HOH B 18 518 33 HOH HOH . V 7 HOH B 19 519 43 HOH HOH . V 7 HOH B 20 520 37 HOH HOH . V 7 HOH B 21 521 42 HOH HOH . V 7 HOH B 22 522 35 HOH HOH . V 7 HOH B 23 523 21 HOH HOH . V 7 HOH B 24 524 13 HOH HOH . V 7 HOH B 25 525 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NRK . . . C 2 24.354 -1.398 92.748 1 45.24 ? C01 NRK 401 A 1 HETATM 2 C C02 NRK . . . C 2 22.917 -1.904 92.637 1 45.24 ? C02 NRK 401 A 1 HETATM 3 C C03 NRK . . . C 2 23.604 -1.904 94.009 1 47.32 ? C03 NRK 401 A 1 HETATM 4 C C04 NRK . . . C 2 22.888 -1.015 95.085 1 45.19 ? C04 NRK 401 A 1 HETATM 5 C C05 NRK . . . C 2 24.899 0.037 92.919 1 53.96 ? C05 NRK 401 A 1 HETATM 6 C C06 NRK . . . C 2 24.244 -3.111 94.675 1 47.08 ? C06 NRK 401 A 1 HETATM 7 C C07 NRK . . . C 2 25.534 -2.965 95.186 1 45.23 ? C07 NRK 401 A 1 HETATM 8 C C08 NRK . . . C 2 26.145 -4.039 95.808 1 48.46 ? C08 NRK 401 A 1 HETATM 9 C C09 NRK . . . C 2 25.478 -5.244 95.956 1 45.24 ? C09 NRK 401 A 1 HETATM 10 C C10 NRK . . . C 2 24.165 -5.386 95.493 1 45.2 ? C10 NRK 401 A 1 HETATM 11 C C11 NRK . . . C 2 23.554 -4.316 94.84 1 45.22 ? C11 NRK 401 A 1 HETATM 12 O O12 NRK . . . C 2 23.841 -0.294 95.889 1 45.95 ? O12 NRK 401 A 1 HETATM 13 C C13 NRK . . . C 2 23.63 1.02 96.297 1 46.64 ? C13 NRK 401 A 1 HETATM 14 C C14 NRK . . . C 2 24.692 1.71 96.924 1 47.06 ? C14 NRK 401 A 1 HETATM 15 N N15 NRK . . . C 2 24.554 2.994 97.357 1 49.23 ? N15 NRK 401 A 1 HETATM 16 C C16 NRK . . . C 2 23.38 3.647 97.125 1 47.6 ? C16 NRK 401 A 1 HETATM 17 N N17 NRK . . . C 2 22.304 3.097 96.518 1 44.56 ? N17 NRK 401 A 1 HETATM 18 C C18 NRK . . . C 2 22.447 1.798 96.115 1 45.14 ? C18 NRK 401 A 1 HETATM 19 O O19 NRK . . . C 2 26.124 0.052 92.837 1 66.87 ? O19 NRK 401 A 1 HETATM 20 N N20 NRK . . . C 2 24.194 1.157 93.189 1 45.21 ? N20 NRK 401 A 1 HETATM 21 C C21 NRK . . . C 2 24.714 2.45 93.493 1 48.36 ? C21 NRK 401 A 1 HETATM 22 C C22 NRK . . . C 2 26.032 2.722 93.979 1 45.2 ? C22 NRK 401 A 1 HETATM 23 C C23 NRK . . . C 2 26.38 4.015 94.413 1 45.15 ? C23 NRK 401 A 1 HETATM 24 C C24 NRK . . . C 2 25.418 5.04 94.361 1 48.95 ? C24 NRK 401 A 1 HETATM 25 C C25 NRK . . . C 2 24.128 4.716 93.917 1 45.22 ? C25 NRK 401 A 1 HETATM 26 N N26 NRK . . . C 2 23.771 3.454 93.531 1 48.49 ? N26 NRK 401 A 1 HETATM 27 C C27 NRK . . . C 2 23.277 5.089 97.607 1 45.16 ? C27 NRK 401 A 1 HETATM 28 C C28 NRK . . . C 2 26.044 1.09 97.25 1 45.16 ? C28 NRK 401 A 1 HETATM 29 F F29 NRK . . . C 2 25.708 6.316 94.729 1 51.4 ? F29 NRK 401 A 1 HETATM 30 F F30 NRK . . . C 2 27.383 -3.891 96.307 1 56.48 ? F30 NRK 401 A 1 HETATM 31 H H011 NRK . . . C 2 25.031 -1.984 92.373 1 45.15 ? H011 NRK 401 A 1 HETATM 32 H H021 NRK . . . C 2 22.773 -2.747 92.181 1 45.15 ? H021 NRK 401 A 1 HETATM 33 H H022 NRK . . . C 2 22.184 -1.294 92.458 1 45.15 ? H022 NRK 401 A 1 HETATM 34 H H041 NRK . . . C 2 22.348 -1.572 95.668 1 45.15 ? H041 NRK 401 A 1 HETATM 35 H H042 NRK . . . C 2 22.256 -0.436 94.638 1 45.15 ? H042 NRK 401 A 1 HETATM 36 H H071 NRK . . . C 2 25.99 -2.164 95.101 1 45.15 ? H071 NRK 401 A 1 HETATM 37 H H091 NRK . . . C 2 25.895 -5.948 96.399 1 45.15 ? H091 NRK 401 A 1 HETATM 38 H H101 NRK . . . C 2 23.722 -6.2 95.577 1 45.15 ? H101 NRK 401 A 1 HETATM 39 H H111 NRK . . . C 2 22.69 -4.414 94.509 1 45.15 ? H111 NRK 401 A 1 HETATM 40 H H181 NRK . . . C 2 21.695 1.443 95.701 1 45.15 ? H181 NRK 401 A 1 HETATM 41 H H201 NRK . . . C 2 23.344 1.076 93.287 1 45.15 ? H201 NRK 401 A 1 HETATM 42 H H221 NRK . . . C 2 26.668 2.061 94.065 1 45.15 ? H221 NRK 401 A 1 HETATM 43 H H231 NRK . . . C 2 27.248 4.204 94.69 1 45.15 ? H231 NRK 401 A 1 HETATM 44 H H251 NRK . . . C 2 23.474 5.376 93.875 1 45.15 ? H251 NRK 401 A 1 HETATM 45 H H271 NRK . . . C 2 22.369 5.424 97.552 1 45.15 ? H271 NRK 401 A 1 HETATM 46 H H273 NRK . . . C 2 23.843 5.666 97.07 1 45.15 ? H273 NRK 401 A 1 HETATM 47 H H272 NRK . . . C 2 23.568 5.151 98.531 1 45.15 ? H272 NRK 401 A 1 HETATM 48 H H282 NRK . . . C 2 25.994 0.126 97.353 1 45.15 ? H282 NRK 401 A 1 HETATM 49 H H281 NRK . . . C 2 26.398 1.451 98.077 1 45.15 ? H281 NRK 401 A 1 HETATM 50 H H283 NRK . . . C 2 26.676 1.281 96.539 1 45.15 ? H283 NRK 401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 50 #