data_6TOT
#
_model_server_result.job_id            K5ZkGyDoQJIXFQ0lKqoQGg 
_model_server_result.datetime_utc      '2024-11-05 04:14:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6tot 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":408}' 
#
_entry.id    6TOT 
#
_exptl.entry_id    6TOT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.434 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'octyl 1-thio-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.25 
_cell.angle_gamma         90 
_cell.entry_id            6TOT 
_cell.length_a            59.725 
_cell.length_b            145.715 
_cell.length_c            71.703 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6TOT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,U 1 1 
B,M,N,O,P,Q,R,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
? 5 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
#
_chem_comp.formula           'C14 H28 O5 S' 
_chem_comp.formula_weight    308.434 
_chem_comp.id                SOG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'octyl 1-thio-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     '2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL;1-S-OCTYL-BETA-D-THIOGLUCOSIDE;octyl 1-thio-beta-D-glucoside;octyl 1-thio-D-glucoside;octyl 1-thio-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 SOG sing 504 n n 
C1 S1 SOG sing 505 n n 
C1 O5 SOG sing 506 n n 
C1 H1 SOG sing 507 n n 
C2 C3 SOG sing 508 n n 
C2 O2 SOG sing 509 n n 
C2 H2 SOG sing 510 n n 
C3 C4 SOG sing 511 n n 
C3 O3 SOG sing 512 n n 
C3 H3 SOG sing 513 n n 
C4 C5 SOG sing 514 n n 
C4 O4 SOG sing 515 n n 
C4 H4 SOG sing 516 n n 
C5 C6 SOG sing 517 n n 
C5 O5 SOG sing 518 n n 
C5 H5 SOG sing 519 n n 
C6 O6 SOG sing 520 n n 
C6 H61 SOG sing 521 n n 
C6 H62 SOG sing 522 n n 
C1' C2' SOG sing 523 n n 
C1' S1 SOG sing 524 n n 
C1' "H1'1" SOG sing 525 n n 
C1' "H1'2" SOG sing 526 n n 
C2' C3' SOG sing 527 n n 
C2' "H2'1" SOG sing 528 n n 
C2' "H2'2" SOG sing 529 n n 
C3' C4' SOG sing 530 n n 
C3' "H3'1" SOG sing 531 n n 
C3' "H3'2" SOG sing 532 n n 
C4' C5' SOG sing 533 n n 
C4' "H4'1" SOG sing 534 n n 
C4' "H4'2" SOG sing 535 n n 
C5' C6' SOG sing 536 n n 
C5' "H5'1" SOG sing 537 n n 
C5' "H5'2" SOG sing 538 n n 
C6' C7' SOG sing 539 n n 
C6' "H6'1" SOG sing 540 n n 
C6' "H6'2" SOG sing 541 n n 
C7' C8' SOG sing 542 n n 
C7' "H7'1" SOG sing 543 n n 
C7' "H7'2" SOG sing 544 n n 
C8' "H8'1" SOG sing 545 n n 
C8' "H8'2" SOG sing 546 n n 
C8' "H8'3" SOG sing 547 n n 
O2 HO2 SOG sing 548 n n 
O3 HO3 SOG sing 549 n n 
O4 HO4 SOG sing 550 n n 
O6 HO6 SOG sing 551 n n 
#
_atom_sites.entry_id                     6TOT 
_atom_sites.fract_transf_matrix[1][1]    0.016743 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00685 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006863 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NRK A 1 401 401 NRK UNL . 
D 3 PG4 A 1 402 501 PG4 PG4 . 
E 4 SO4 A 1 403 1 SO4 SO4 . 
F 4 SO4 A 1 404 3 SO4 SO4 . 
G 5 SOG A 1 405 2 SOG SOG . 
H 5 SOG A 1 406 3 SOG SOG . 
I 5 SOG A 1 407 13 SOG SOG . 
J 5 SOG A 1 408 14 SOG SOG . 
K 6 PGW A 1 409 1 PGW PGW . 
L 6 PGW A 1 410 2 PGW PGW . 
M 2 NRK B 1 401 401 NRK UNL . 
N 4 SO4 B 1 402 2 SO4 SO4 . 
O 4 SO4 B 1 403 4 SO4 SO4 . 
P 5 SOG B 1 404 1 SOG SOG . 
Q 5 SOG B 1 405 4 SOG SOG . 
R 5 SOG B 1 406 8 SOG SOG . 
S 5 SOG B 1 407 10 SOG SOG . 
T 5 SOG B 1 408 11 SOG SOG . 
U 7 HOH A 1 501 38 HOH HOH . 
U 7 HOH A 2 502 18 HOH HOH . 
U 7 HOH A 3 503 12 HOH HOH . 
U 7 HOH A 4 504 39 HOH HOH . 
U 7 HOH A 5 505 28 HOH HOH . 
U 7 HOH A 6 506 31 HOH HOH . 
U 7 HOH A 7 507 7 HOH HOH . 
U 7 HOH A 8 508 11 HOH HOH . 
U 7 HOH A 9 509 8 HOH HOH . 
U 7 HOH A 10 510 29 HOH HOH . 
U 7 HOH A 11 511 1 HOH HOH . 
U 7 HOH A 12 512 15 HOH HOH . 
U 7 HOH A 13 513 32 HOH HOH . 
U 7 HOH A 14 514 16 HOH HOH . 
U 7 HOH A 15 515 17 HOH HOH . 
U 7 HOH A 16 516 30 HOH HOH . 
U 7 HOH A 17 517 10 HOH HOH . 
U 7 HOH A 18 518 40 HOH HOH . 
V 7 HOH B 1 501 6 HOH HOH . 
V 7 HOH B 2 502 14 HOH HOH . 
V 7 HOH B 3 503 26 HOH HOH . 
V 7 HOH B 4 504 41 HOH HOH . 
V 7 HOH B 5 505 34 HOH HOH . 
V 7 HOH B 6 506 23 HOH HOH . 
V 7 HOH B 7 507 5 HOH HOH . 
V 7 HOH B 8 508 3 HOH HOH . 
V 7 HOH B 9 509 36 HOH HOH . 
V 7 HOH B 10 510 9 HOH HOH . 
V 7 HOH B 11 511 20 HOH HOH . 
V 7 HOH B 12 512 25 HOH HOH . 
V 7 HOH B 13 513 2 HOH HOH . 
V 7 HOH B 14 514 4 HOH HOH . 
V 7 HOH B 15 515 22 HOH HOH . 
V 7 HOH B 16 516 19 HOH HOH . 
V 7 HOH B 17 517 24 HOH HOH . 
V 7 HOH B 18 518 33 HOH HOH . 
V 7 HOH B 19 519 43 HOH HOH . 
V 7 HOH B 20 520 37 HOH HOH . 
V 7 HOH B 21 521 42 HOH HOH . 
V 7 HOH B 22 522 35 HOH HOH . 
V 7 HOH B 23 523 21 HOH HOH . 
V 7 HOH B 24 524 13 HOH HOH . 
V 7 HOH B 25 525 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 SOG . . . J 5 14.269 -3.074 79.589 1 117.75 ? C1 SOG 408 A 1 
HETATM 2 C C2 SOG . . . J 5 13.815 -2.439 80.909 1 116.76 ? C2 SOG 408 A 1 
HETATM 3 C C3 SOG . . . J 5 13.638 -0.944 80.631 1 118.71 ? C3 SOG 408 A 1 
HETATM 4 C C4 SOG . . . J 5 14.972 -0.319 80.219 1 120.57 ? C4 SOG 408 A 1 
HETATM 5 C C5 SOG . . . J 5 15.417 -1.019 78.919 1 120.28 ? C5 SOG 408 A 1 
HETATM 6 C C6 SOG . . . J 5 16.727 -0.481 78.339 1 120.5 ? C6 SOG 408 A 1 
HETATM 7 C C1' SOG . . . J 5 14.729 -5.329 78.073 1 113.11 ? C1' SOG 408 A 1 
HETATM 8 C C2' SOG . . . J 5 14.881 -6.846 78.025 1 108.93 ? C2' SOG 408 A 1 
HETATM 9 C C3' SOG . . . J 5 16.173 -7.241 77.321 1 105.77 ? C3' SOG 408 A 1 
HETATM 10 C C4' SOG . . . J 5 16.687 -8.574 77.843 1 102.53 ? C4' SOG 408 A 1 
HETATM 11 C C5' SOG . . . J 5 17.701 -9.179 76.885 1 99.96 ? C5' SOG 408 A 1 
HETATM 12 C C6' SOG . . . J 5 18.191 -10.517 77.417 1 98.53 ? C6' SOG 408 A 1 
HETATM 13 C C7' SOG . . . J 5 17.923 -11.618 76.405 1 98.2 ? C7' SOG 408 A 1 
HETATM 14 C C8' SOG . . . J 5 17.806 -12.956 77.101 1 98.93 ? C8' SOG 408 A 1 
HETATM 15 S S1 SOG . . . J 5 14.371 -4.837 79.731 1 117.53 ? S1 SOG 408 A 1 
HETATM 16 O O2 SOG . . . J 5 12.6 -3.039 81.373 1 115.04 ? O2 SOG 408 A 1 
HETATM 17 O O3 SOG . . . J 5 13.014 -0.226 81.69 1 118.79 ? O3 SOG 408 A 1 
HETATM 18 O O4 SOG . . . J 5 14.832 1.106 80.08 1 121.84 ? O4 SOG 408 A 1 
HETATM 19 O O5 SOG . . . J 5 15.492 -2.453 79.125 1 118.67 ? O5 SOG 408 A 1 
HETATM 20 O O6 SOG . . . J 5 16.528 0.74 77.609 1 120.27 ? O6 SOG 408 A 1 
#
_model_server_stats.io_time_ms              135 
_model_server_stats.parse_time_ms           142 
_model_server_stats.create_model_time_ms    94 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#