data_6TOT # _model_server_result.job_id ztfzJG2XNNWQyA56eR-hbQ _model_server_result.datetime_utc '2024-11-22 12:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":410}' # _entry.id 6TOT # _exptl.entry_id 6TOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.007 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.25 _cell.angle_gamma 90 _cell.entry_id 6TOT _cell.length_a 59.725 _cell.length_b 145.715 _cell.length_c 71.703 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,U 1 1 B,M,N,O,P,Q,R,S,T,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGW _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Palmitoyl-2-Oleoyl-sn-Glycero-3-[Phospho-(1-glycerol)];PHOSPHATIDYLGLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAD C05 PGW sing 320 n n CAD HAD PGW sing 321 n n CAD HADA PGW sing 322 n n OAE CAD PGW sing 323 n n OAE HOAE PGW sing 324 n n OAF C05 PGW sing 325 n n OAF HOAF PGW sing 326 n n P O13 PGW sing 327 n n P O11 PGW sing 328 n n C01 O03 PGW sing 329 n n C01 C02 PGW sing 330 n n C01 H01 PGW sing 331 n n C01 H01A PGW sing 332 n n C1 C2 PGW sing 333 n n O01 C1 PGW sing 334 n n C02 O01 PGW sing 335 n n C02 H02 PGW sing 336 n n C2 C3 PGW sing 337 n n C2 H2 PGW sing 338 n n C2 H2A PGW sing 339 n n O02 C1 PGW doub 340 n n C03 C02 PGW sing 341 n n C03 H03 PGW sing 342 n n C03 H03A PGW sing 343 n n C3 C4 PGW sing 344 n n C3 H3 PGW sing 345 n n C3 H3A PGW sing 346 n n C04 C05 PGW sing 347 n n C04 O12 PGW sing 348 n n C04 H04 PGW sing 349 n n C04 H04A PGW sing 350 n n C4 C5 PGW sing 351 n n C4 H4 PGW sing 352 n n C4 H4A PGW sing 353 n n O04 C19 PGW doub 354 n n C05 H05 PGW sing 355 n n C5 C6 PGW sing 356 n n C5 H5 PGW sing 357 n n C5 H5A PGW sing 358 n n C06 C07 PGW sing 359 n n C06 H06 PGW sing 360 n n C06 H06A PGW sing 361 n n C6 C7 PGW sing 362 n n C6 H6 PGW sing 363 n n C6 H6A PGW sing 364 n n C07 H07 PGW sing 365 n n C07 H07A PGW sing 366 n n C7 C8 PGW sing 367 n n C7 H7 PGW sing 368 n n C7 H7A PGW sing 369 n n C08 C07 PGW sing 370 n n C08 H08 PGW sing 371 n n C08 H08A PGW sing 372 n n C8 C9 PGW sing 373 n n C8 H8 PGW sing 374 n n C8 H8A PGW sing 375 n n C09 C08 PGW sing 376 n n C09 C11 PGW sing 377 n n C09 H09 PGW sing 378 n n C09 H09A PGW sing 379 n n C9 C10 PGW doub 380 z n C10 C06 PGW sing 381 n n C11 H11 PGW sing 382 n n C11 H11A PGW sing 383 n n O11 C03 PGW sing 384 n n C12 C11 PGW sing 385 n n C12 H12 PGW sing 386 n n C12 H12A PGW sing 387 n n O12 P PGW sing 388 n n C13 C12 PGW sing 389 n n C13 C14 PGW sing 390 n n C13 H13 PGW sing 391 n n C13 H13A PGW sing 392 n n O13 HO13 PGW sing 393 n n C14 H14 PGW sing 394 n n C14 H14A PGW sing 395 n n C14 H14B PGW sing 396 n n O14 P PGW doub 397 n n C15 C16 PGW sing 398 n n C15 H15 PGW sing 399 n n C15 H15A PGW sing 400 n n C16 H16 PGW sing 401 n n C16 H16A PGW sing 402 n n C17 C16 PGW sing 403 n n C17 C18 PGW sing 404 n n C17 H17 PGW sing 405 n n C17 H17A PGW sing 406 n n C18 C28 PGW sing 407 n n C18 H18 PGW sing 408 n n C18 H18A PGW sing 409 n n C19 O03 PGW sing 410 n n C19 C20 PGW sing 411 n n C20 C21 PGW sing 412 n n C20 H20 PGW sing 413 n n C20 H20A PGW sing 414 n n C21 C22 PGW sing 415 n n C21 H21 PGW sing 416 n n C21 H21A PGW sing 417 n n C22 C23 PGW sing 418 n n C22 H22 PGW sing 419 n n C22 H22A PGW sing 420 n n C23 C24 PGW sing 421 n n C23 H23 PGW sing 422 n n C23 H23A PGW sing 423 n n C24 C25 PGW sing 424 n n C24 H24 PGW sing 425 n n C24 H24A PGW sing 426 n n C25 C26 PGW sing 427 n n C25 H25 PGW sing 428 n n C25 H25A PGW sing 429 n n C26 C27 PGW sing 430 n n C26 H26 PGW sing 431 n n C26 H26A PGW sing 432 n n C27 C15 PGW sing 433 n n C27 H27 PGW sing 434 n n C27 H27A PGW sing 435 n n C28 H28 PGW sing 436 n n C28 H28A PGW sing 437 n n C29 H29 PGW sing 438 n n C29 H29A PGW sing 439 n n C29 H29B PGW sing 440 n n C30 C28 PGW sing 441 n n C30 C29 PGW sing 442 n n C30 H30 PGW sing 443 n n C30 H30A PGW sing 444 n n C9 H9 PGW sing 445 n n C10 H10 PGW sing 446 n n # _atom_sites.entry_id 6TOT _atom_sites.fract_transf_matrix[1][1] 0.016743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00685 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NRK A 1 401 401 NRK UNL . D 3 PG4 A 1 402 501 PG4 PG4 . E 4 SO4 A 1 403 1 SO4 SO4 . F 4 SO4 A 1 404 3 SO4 SO4 . G 5 SOG A 1 405 2 SOG SOG . H 5 SOG A 1 406 3 SOG SOG . I 5 SOG A 1 407 13 SOG SOG . J 5 SOG A 1 408 14 SOG SOG . K 6 PGW A 1 409 1 PGW PGW . L 6 PGW A 1 410 2 PGW PGW . M 2 NRK B 1 401 401 NRK UNL . N 4 SO4 B 1 402 2 SO4 SO4 . O 4 SO4 B 1 403 4 SO4 SO4 . P 5 SOG B 1 404 1 SOG SOG . Q 5 SOG B 1 405 4 SOG SOG . R 5 SOG B 1 406 8 SOG SOG . S 5 SOG B 1 407 10 SOG SOG . T 5 SOG B 1 408 11 SOG SOG . U 7 HOH A 1 501 38 HOH HOH . U 7 HOH A 2 502 18 HOH HOH . U 7 HOH A 3 503 12 HOH HOH . U 7 HOH A 4 504 39 HOH HOH . U 7 HOH A 5 505 28 HOH HOH . U 7 HOH A 6 506 31 HOH HOH . U 7 HOH A 7 507 7 HOH HOH . U 7 HOH A 8 508 11 HOH HOH . U 7 HOH A 9 509 8 HOH HOH . U 7 HOH A 10 510 29 HOH HOH . U 7 HOH A 11 511 1 HOH HOH . U 7 HOH A 12 512 15 HOH HOH . U 7 HOH A 13 513 32 HOH HOH . U 7 HOH A 14 514 16 HOH HOH . U 7 HOH A 15 515 17 HOH HOH . U 7 HOH A 16 516 30 HOH HOH . U 7 HOH A 17 517 10 HOH HOH . U 7 HOH A 18 518 40 HOH HOH . V 7 HOH B 1 501 6 HOH HOH . V 7 HOH B 2 502 14 HOH HOH . V 7 HOH B 3 503 26 HOH HOH . V 7 HOH B 4 504 41 HOH HOH . V 7 HOH B 5 505 34 HOH HOH . V 7 HOH B 6 506 23 HOH HOH . V 7 HOH B 7 507 5 HOH HOH . V 7 HOH B 8 508 3 HOH HOH . V 7 HOH B 9 509 36 HOH HOH . V 7 HOH B 10 510 9 HOH HOH . V 7 HOH B 11 511 20 HOH HOH . V 7 HOH B 12 512 25 HOH HOH . V 7 HOH B 13 513 2 HOH HOH . V 7 HOH B 14 514 4 HOH HOH . V 7 HOH B 15 515 22 HOH HOH . V 7 HOH B 16 516 19 HOH HOH . V 7 HOH B 17 517 24 HOH HOH . V 7 HOH B 18 518 33 HOH HOH . V 7 HOH B 19 519 43 HOH HOH . V 7 HOH B 20 520 37 HOH HOH . V 7 HOH B 21 521 42 HOH HOH . V 7 HOH B 22 522 35 HOH HOH . V 7 HOH B 23 523 21 HOH HOH . V 7 HOH B 24 524 13 HOH HOH . V 7 HOH B 25 525 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAD PGW . . . L 6 24.206 -32.831 100.24 1 106.38 ? CAD PGW 410 A 1 HETATM 2 O OAE PGW . . . L 6 23.612 -31.767 100.995 1 104.88 ? OAE PGW 410 A 1 HETATM 3 O OAF PGW . . . L 6 26.363 -31.838 100.621 1 108.02 ? OAF PGW 410 A 1 HETATM 4 P P PGW . . . L 6 28.92 -33.773 99.663 1 117.2 ? P PGW 410 A 1 HETATM 5 C C01 PGW . . . L 6 30.219 -30.085 98.392 1 95.54 ? C01 PGW 410 A 1 HETATM 6 C C1 PGW . . . L 6 33.645 -30.531 97.46 1 84.37 ? C1 PGW 410 A 1 HETATM 7 O O01 PGW . . . L 6 32.618 -30.472 98.507 1 91.33 ? O01 PGW 410 A 1 HETATM 8 C C02 PGW . . . L 6 31.355 -31.079 98.18 1 97.49 ? C02 PGW 410 A 1 HETATM 9 C C2 PGW . . . L 6 34.513 -29.326 97.155 1 76.06 ? C2 PGW 410 A 1 HETATM 10 O O02 PGW . . . L 6 33.855 -31.588 96.89 1 86.33 ? O02 PGW 410 A 1 HETATM 11 C C03 PGW . . . L 6 31.094 -32.333 99.02 1 104.51 ? C03 PGW 410 A 1 HETATM 12 C C3 PGW . . . L 6 34.389 -28.775 95.739 1 68.69 ? C3 PGW 410 A 1 HETATM 13 O O03 PGW . . . L 6 29.3 -30.202 97.306 1 92.65 ? O03 PGW 410 A 1 HETATM 14 C C04 PGW . . . L 6 26.277 -34.132 99.769 1 111.7 ? C04 PGW 410 A 1 HETATM 15 C C4 PGW . . . L 6 35.643 -27.962 95.417 1 65.24 ? C4 PGW 410 A 1 HETATM 16 O O04 PGW . . . L 6 27.189 -30.072 98.241 1 92.33 ? O04 PGW 410 A 1 HETATM 17 C C05 PGW . . . L 6 25.642 -33.076 100.674 1 108.51 ? C05 PGW 410 A 1 HETATM 18 C C5 PGW . . . L 6 35.361 -26.637 94.706 1 61.91 ? C5 PGW 410 A 1 HETATM 19 C C06 PGW . . . L 6 36.793 -21.004 91.579 1 65.19 ? C06 PGW 410 A 1 HETATM 20 C C6 PGW . . . L 6 36.591 -26.015 94.034 1 59.43 ? C6 PGW 410 A 1 HETATM 21 C C07 PGW . . . L 6 35.596 -20.065 91.484 1 67.84 ? C07 PGW 410 A 1 HETATM 22 C C7 PGW . . . L 6 36.21 -24.713 93.329 1 59.91 ? C7 PGW 410 A 1 HETATM 23 C C08 PGW . . . L 6 35.482 -19.415 90.103 1 69.38 ? C08 PGW 410 A 1 HETATM 24 C C8 PGW . . . L 6 37.383 -23.86 92.838 1 60.8 ? C8 PGW 410 A 1 HETATM 25 C C09 PGW . . . L 6 34.306 -18.441 90.094 1 72.05 ? C09 PGW 410 A 1 HETATM 26 C C9 PGW . . . L 6 37.378 -22.503 93.536 1 63.08 ? C9 PGW 410 A 1 HETATM 27 C C10 PGW . . . L 6 37.126 -21.285 93.026 1 63.26 ? C10 PGW 410 A 1 HETATM 28 C C11 PGW . . . L 6 33.771 -18.158 88.69 1 74.75 ? C11 PGW 410 A 1 HETATM 29 O O11 PGW . . . L 6 29.853 -32.944 98.63 1 110.88 ? O11 PGW 410 A 1 HETATM 30 C C12 PGW . . . L 6 32.256 -18.382 88.588 1 74.94 ? C12 PGW 410 A 1 HETATM 31 O O12 PGW . . . L 6 27.417 -33.605 99.08 1 115.48 ? O12 PGW 410 A 1 HETATM 32 C C13 PGW . . . L 6 31.474 -17.082 88.752 1 74.02 ? C13 PGW 410 A 1 HETATM 33 O O13 PGW . . . L 6 29.276 -35.244 99.541 1 118.01 ? O13 PGW 410 A 1 HETATM 34 C C14 PGW . . . L 6 30.031 -17.256 88.343 1 73.32 ? C14 PGW 410 A 1 HETATM 35 O O14 PGW . . . L 6 28.972 -33.082 101.016 1 118.85 ? O14 PGW 410 A 1 HETATM 36 C C15 PGW . . . L 6 27.312 -23.218 95.154 1 54.98 ? C15 PGW 410 A 1 HETATM 37 C C16 PGW . . . L 6 27.593 -22.638 93.785 1 51.25 ? C16 PGW 410 A 1 HETATM 38 C C17 PGW . . . L 6 27.244 -23.629 92.69 1 49.57 ? C17 PGW 410 A 1 HETATM 39 C C18 PGW . . . L 6 27.938 -23.205 91.402 1 48.23 ? C18 PGW 410 A 1 HETATM 40 C C19 PGW . . . L 6 27.96 -29.644 97.397 1 89.46 ? C19 PGW 410 A 1 HETATM 41 C C20 PGW . . . L 6 27.526 -28.572 96.435 1 83.35 ? C20 PGW 410 A 1 HETATM 42 C C21 PGW . . . L 6 27.112 -27.334 97.213 1 80.26 ? C21 PGW 410 A 1 HETATM 43 C C22 PGW . . . L 6 25.617 -27.108 97.04 1 78.41 ? C22 PGW 410 A 1 HETATM 44 C C23 PGW . . . L 6 25.059 -26.187 98.114 1 75.63 ? C23 PGW 410 A 1 HETATM 45 C C24 PGW . . . L 6 24.781 -24.81 97.536 1 74.01 ? C24 PGW 410 A 1 HETATM 46 C C25 PGW . . . L 6 25.842 -23.795 97.975 1 71.93 ? C25 PGW 410 A 1 HETATM 47 C C26 PGW . . . L 6 25.889 -22.513 97.131 1 66.71 ? C26 PGW 410 A 1 HETATM 48 C C27 PGW . . . L 6 25.936 -22.763 95.624 1 60.03 ? C27 PGW 410 A 1 HETATM 49 C C28 PGW . . . L 6 27.658 -24.198 90.281 1 44.74 ? C28 PGW 410 A 1 HETATM 50 C C29 PGW . . . L 6 28.466 -24.82 88.02 1 42.16 ? C29 PGW 410 A 1 HETATM 51 C C30 PGW . . . L 6 28.236 -23.677 88.973 1 42.46 ? C30 PGW 410 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #