data_6TP3 # _model_server_result.job_id vB5sDYlhpgtwlWVUu72Xzg _model_server_result.datetime_utc '2024-11-06 03:10:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6tp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 6TP3 # _exptl.entry_id 6TP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 450.921 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{S})-2-(6-chloranyl-7-methyl-1~{H}-benzimidazol-2-yl)-2-methyl-pyrrolidin-1-yl]-[5-methoxy-2-(1,2,3-triazol-2-yl)phenyl]methanone' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.55 _cell.angle_gamma 90 _cell.entry_id 6TP3 _cell.length_a 61.223 _cell.length_b 146.423 _cell.length_c 73.6 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6TP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M 1 1 B,N,O,P,Q,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 95 A CYS 119 1_555 A SG CYS 178 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf2 B SG CYS 95 B CYS 119 1_555 B SG CYS 178 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? # _chem_comp.formula 'C23 H23 Cl N6 O2' _chem_comp.formula_weight 450.921 _chem_comp.id NS2 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{S})-2-(6-chloranyl-7-methyl-1~{H}-benzimidazol-2-yl)-2-methyl-pyrrolidin-1-yl]-[5-methoxy-2-(1,2,3-triazol-2-yl)phenyl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N32 C31 NS2 doub 235 n y N32 N28 NS2 sing 236 n y C31 C30 NS2 sing 237 n y C05 C04 NS2 doub 238 n y C05 C06 NS2 sing 239 n y C04 C03 NS2 sing 240 n y C01 O02 NS2 sing 241 n n N28 C06 NS2 sing 242 n n N28 N29 NS2 sing 243 n y C06 C07 NS2 doub 244 n y C30 N29 NS2 doub 245 n y C03 O02 NS2 sing 246 n n C03 C08 NS2 doub 247 n y C21 C20 NS2 doub 248 n y C21 C22 NS2 sing 249 n y C20 C19 NS2 sing 250 n y CL1 C22 NS2 sing 251 n n C22 C23 NS2 doub 252 n y C08 C07 NS2 sing 253 n y C07 C09 NS2 sing 254 n n C19 N18 NS2 sing 255 n y C19 C24 NS2 doub 256 n y N18 C17 NS2 doub 257 n y C23 C24 NS2 sing 258 n y C23 C26 NS2 sing 259 n n C24 N25 NS2 sing 260 n y C09 O10 NS2 doub 261 n n C09 N11 NS2 sing 262 n n C16 C15 NS2 sing 263 n n C17 N25 NS2 sing 264 n y C17 C15 NS2 sing 265 n n N11 C15 NS2 sing 266 n n N11 C12 NS2 sing 267 n n C15 C14 NS2 sing 268 n n C12 C13 NS2 sing 269 n n C14 C13 NS2 sing 270 n n C01 H013 NS2 sing 271 n n C01 H011 NS2 sing 272 n n C01 H012 NS2 sing 273 n n C04 H041 NS2 sing 274 n n C05 H051 NS2 sing 275 n n C08 H081 NS2 sing 276 n n C12 H121 NS2 sing 277 n n C12 H122 NS2 sing 278 n n C13 H131 NS2 sing 279 n n C13 H132 NS2 sing 280 n n C14 H141 NS2 sing 281 n n C14 H142 NS2 sing 282 n n C16 H162 NS2 sing 283 n n C16 H161 NS2 sing 284 n n C16 H163 NS2 sing 285 n n C20 H201 NS2 sing 286 n n C21 H211 NS2 sing 287 n n C26 H261 NS2 sing 288 n n C26 H263 NS2 sing 289 n n C26 H262 NS2 sing 290 n n C30 H301 NS2 sing 291 n n C31 H311 NS2 sing 292 n n N25 H251 NS2 sing 293 n n # _atom_sites.entry_id 6TP3 _atom_sites.fract_transf_matrix[1][1] 0.016334 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NS2 A 1 401 401 NS2 UNL . D 3 SO4 A 1 402 1 SO4 SO4 . E 3 SO4 A 1 403 2 SO4 SO4 . F 4 PGW A 1 404 2 PGW PGW . G 5 SOG A 1 405 1 SOG SOG . H 5 SOG A 1 406 3 SOG SOG . I 5 SOG A 1 407 4 SOG SOG . J 5 SOG A 1 408 8 SOG SOG . K 5 SOG A 1 409 15 SOG SOG . L 5 SOG A 1 410 16 SOG SOG . M 5 SOG A 1 411 17 SOG SOG . N 2 NS2 B 1 401 401 NS2 UNL . O 3 SO4 B 1 402 3 SO4 SO4 . P 4 PGW B 1 403 1 PGW PGW . Q 5 SOG B 1 404 6 SOG SOG . R 5 SOG B 1 405 7 SOG SOG . S 5 SOG B 1 406 10 SOG SOG . T 5 SOG B 1 407 11 SOG SOG . U 5 SOG B 1 408 12 SOG SOG . V 5 SOG B 1 409 13 SOG SOG . W 5 SOG B 1 410 14 SOG SOG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 NS2 . . . C 2 -28.604 14.054 -19.521 1 129.52 ? C01 NS2 401 A 1 HETATM 2 C C03 NS2 . . . C 2 -28.189 16.327 -18.769 1 104.1 ? C03 NS2 401 A 1 HETATM 3 C C04 NS2 . . . C 2 -27.854 16.83 -20.04 1 98.22 ? C04 NS2 401 A 1 HETATM 4 C C05 NS2 . . . C 2 -27.554 18.217 -20.106 1 94.38 ? C05 NS2 401 A 1 HETATM 5 C C06 NS2 . . . C 2 -27.609 19.048 -18.929 1 92.09 ? C06 NS2 401 A 1 HETATM 6 C C07 NS2 . . . C 2 -28.008 18.558 -17.669 1 90.44 ? C07 NS2 401 A 1 HETATM 7 C C08 NS2 . . . C 2 -28.296 17.212 -17.681 1 92.73 ? C08 NS2 401 A 1 HETATM 8 C C09 NS2 . . . C 2 -28.151 19.351 -16.398 1 91.74 ? C09 NS2 401 A 1 HETATM 9 C C12 NS2 . . . C 2 -27.383 20.654 -14.261 1 81.97 ? C12 NS2 401 A 1 HETATM 10 C C13 NS2 . . . C 2 -26.077 20.749 -13.503 1 75.74 ? C13 NS2 401 A 1 HETATM 11 C C14 NS2 . . . C 2 -25.269 19.596 -14.044 1 81.85 ? C14 NS2 401 A 1 HETATM 12 C C15 NS2 . . . C 2 -25.697 19.478 -15.483 1 78.34 ? C15 NS2 401 A 1 HETATM 13 C C16 NS2 . . . C 2 -24.884 20.53 -16.336 1 62.95 ? C16 NS2 401 A 1 HETATM 14 C C17 NS2 . . . C 2 -25.461 18.044 -15.948 1 83.11 ? C17 NS2 401 A 1 HETATM 15 C C19 NS2 . . . C 2 -24.963 16.509 -17.447 1 87.66 ? C19 NS2 401 A 1 HETATM 16 C C20 NS2 . . . C 2 -24.397 15.901 -18.577 1 90.52 ? C20 NS2 401 A 1 HETATM 17 C C21 NS2 . . . C 2 -24.587 14.614 -18.755 1 71.11 ? C21 NS2 401 A 1 HETATM 18 C C22 NS2 . . . C 2 -25.209 13.887 -17.779 1 83.11 ? C22 NS2 401 A 1 HETATM 19 C C23 NS2 . . . C 2 -25.828 14.417 -16.611 1 85.1 ? C23 NS2 401 A 1 HETATM 20 C C24 NS2 . . . C 2 -25.645 15.801 -16.438 1 83.84 ? C24 NS2 401 A 1 HETATM 21 C C26 NS2 . . . C 2 -26.554 13.628 -15.621 1 91.43 ? C26 NS2 401 A 1 HETATM 22 C C30 NS2 . . . C 2 -27.209 22.567 -18.799 1 98.16 ? C30 NS2 401 A 1 HETATM 23 C C31 NS2 . . . C 2 -26.795 22.261 -20.147 1 97.98 ? C31 NS2 401 A 1 HETATM 24 N N11 NS2 . . . C 2 -27.111 19.798 -15.515 1 85.19 ? N11 NS2 401 A 1 HETATM 25 N N18 NS2 . . . C 2 -24.916 17.835 -17.132 1 87.85 ? N18 NS2 401 A 1 HETATM 26 N N25 NS2 . . . C 2 -26.075 16.806 -15.502 1 82.29 ? N25 NS2 401 A 1 HETATM 27 N N28 NS2 . . . C 2 -27.326 20.457 -19.147 1 93.99 ? N28 NS2 401 A 1 HETATM 28 N N29 NS2 . . . C 2 -27.557 21.421 -18.193 1 95.87 ? N29 NS2 401 A 1 HETATM 29 N N32 NS2 . . . C 2 -26.876 20.931 -20.344 1 95.21 ? N32 NS2 401 A 1 HETATM 30 O O02 NS2 . . . C 2 -28.625 15.032 -18.514 1 118.29 ? O02 NS2 401 A 1 HETATM 31 O O10 NS2 . . . C 2 -29.282 19.747 -16.134 1 98.88 ? O10 NS2 401 A 1 HETATM 32 CL CL1 NS2 . . . C 2 -25.245 12.254 -18.338 1 92.92 ? CL1 NS2 401 A 1 HETATM 33 H H013 NS2 . . . C 2 -28.22 13.292 -19.155 1 129.56 ? H013 NS2 401 A 1 HETATM 34 H H011 NS2 . . . C 2 -28.035 14.254 -20.228 1 129.56 ? H011 NS2 401 A 1 HETATM 35 H H012 NS2 . . . C 2 -29.447 13.782 -19.805 1 129.56 ? H012 NS2 401 A 1 HETATM 36 H H041 NS2 . . . C 2 -27.806 16.262 -20.775 1 98.17 ? H041 NS2 401 A 1 HETATM 37 H H051 NS2 . . . C 2 -27.296 18.525 -20.943 1 94.33 ? H051 NS2 401 A 1 HETATM 38 H H081 NS2 . . . C 2 -28.551 16.838 -16.876 1 92.63 ? H081 NS2 401 A 1 HETATM 39 H H121 NS2 . . . C 2 -28.067 20.344 -13.707 1 81.97 ? H121 NS2 401 A 1 HETATM 40 H H122 NS2 . . . C 2 -27.646 21.534 -14.454 1 81.97 ? H122 NS2 401 A 1 HETATM 41 H H131 NS2 . . . C 2 -26.205 20.7 -12.585 1 75.66 ? H131 NS2 401 A 1 HETATM 42 H H132 NS2 . . . C 2 -25.626 21.565 -13.598 1 75.66 ? H132 NS2 401 A 1 HETATM 43 H H141 NS2 . . . C 2 -24.344 19.74 -13.971 1 81.88 ? H141 NS2 401 A 1 HETATM 44 H H142 NS2 . . . C 2 -25.424 18.822 -13.541 1 81.88 ? H142 NS2 401 A 1 HETATM 45 H H162 NS2 . . . C 2 -25.133 20.542 -17.238 1 62.9 ? H162 NS2 401 A 1 HETATM 46 H H161 NS2 . . . C 2 -23.955 20.375 -16.32 1 62.9 ? H161 NS2 401 A 1 HETATM 47 H H163 NS2 . . . C 2 -25.007 21.405 -16.034 1 62.9 ? H163 NS2 401 A 1 HETATM 48 H H201 NS2 . . . C 2 -23.993 16.386 -19.211 1 90.8 ? H201 NS2 401 A 1 HETATM 49 H H211 NS2 . . . C 2 -24.198 14.181 -19.486 1 70.79 ? H211 NS2 401 A 1 HETATM 50 H H261 NS2 . . . C 2 -27.119 12.976 -15.993 1 91.44 ? H261 NS2 401 A 1 HETATM 51 H H263 NS2 . . . C 2 -27.094 14.158 -15.053 1 91.44 ? H263 NS2 401 A 1 HETATM 52 H H262 NS2 . . . C 2 -25.945 13.167 -15.08 1 91.44 ? H262 NS2 401 A 1 HETATM 53 H H301 NS2 . . . C 2 -27.25 23.4 -18.385 1 98.17 ? H301 NS2 401 A 1 HETATM 54 H H311 NS2 . . . C 2 -26.514 22.856 -20.799 1 98.01 ? H311 NS2 401 A 1 HETATM 55 H H251 NS2 . . . C 2 -26.506 16.663 -14.759 1 82.26 ? H251 NS2 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 55 #